Wall clock time and date at job start Sun Mar 29 2020 21:59:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46502 * 109.47011 * 2 1 4 4 N 1.40090 * 126.03499 * 90.02445 * 3 2 1 5 5 C 1.30836 * 108.20534 * 179.97438 * 4 3 2 6 6 C 1.39870 * 108.20019 * 0.24683 * 5 4 3 7 7 C 1.34942 * 126.03991 * 270.02750 * 3 2 1 8 8 C 1.50696 * 126.12855 * 359.97438 * 7 3 2 9 9 N 1.46898 * 109.47460 * 275.00164 * 8 7 3 10 10 C 1.46895 * 111.00180 * 179.97438 * 9 8 7 11 11 C 1.50701 * 109.47340 * 179.97438 * 10 9 8 12 12 H 1.08000 * 120.00026 * 0.02562 * 11 10 9 13 13 C 1.37879 * 120.00157 * 179.97438 * 11 10 9 14 14 N 1.31512 * 119.99955 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99800 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47005 * 60.00517 * 15 13 11 17 17 H 1.48504 * 109.46652 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47172 * 299.99903 * 15 13 11 19 19 H 1.08998 * 109.46942 * 59.99983 * 1 2 3 20 20 H 1.09000 * 109.46943 * 179.97438 * 1 2 3 21 21 H 1.08999 * 109.46678 * 299.99417 * 1 2 3 22 22 H 1.09004 * 109.47115 * 240.00426 * 2 1 3 23 23 H 1.09002 * 109.47382 * 120.00180 * 2 1 3 24 24 H 1.08002 * 125.89537 * 179.97438 * 5 4 3 25 25 H 1.07998 * 126.03441 * 179.71717 * 6 5 4 26 26 H 1.09005 * 109.46760 * 35.00467 * 8 7 3 27 27 H 1.08998 * 109.47394 * 154.99715 * 8 7 3 28 28 H 1.00894 * 111.00129 * 303.95323 * 9 8 7 29 29 H 1.09004 * 109.47674 * 300.00444 * 10 9 8 30 30 H 1.09004 * 109.46981 * 60.00216 * 10 9 8 31 31 H 0.97000 * 120.00082 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2935 2.1581 1.1328 5 6 2.7090 3.3322 0.7322 6 6 2.7064 3.3428 -0.6664 7 6 2.2825 2.1300 -1.0912 8 6 2.1285 1.6949 -2.5257 9 7 3.3412 0.9858 -2.9553 10 6 3.2266 0.5453 -4.3519 11 6 4.4865 -0.1760 -4.7562 12 1 5.2917 -0.2956 -4.0464 13 6 4.6110 -0.6841 -6.0319 14 7 3.6303 -0.5389 -6.8960 15 14 6.1725 -1.5787 -6.5327 16 1 6.3690 -2.7604 -5.6551 17 1 6.0566 -2.0239 -7.9447 18 1 7.3332 -0.6625 -6.3967 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8901 22 1 1.8934 -0.5138 -0.8901 23 1 1.8934 -0.5139 0.8900 24 1 2.9992 4.1531 1.3712 25 1 2.9937 4.1719 -1.2961 26 1 1.2687 1.0307 -2.6136 27 1 1.9770 2.5707 -3.1567 28 1 4.1611 1.5585 -2.8225 29 1 2.3745 -0.1270 -4.4522 30 1 3.0825 1.4129 -4.9959 31 1 3.7180 -0.8960 -7.7936 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000164828907.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:58 Heat of formation + Delta-G solvation = 67.687432 kcal Electronic energy + Delta-G solvation = -13364.655680 eV Core-core repulsion = 11068.474948 eV Total energy + Delta-G solvation = -2296.180732 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.94283 -35.49796 -34.22048 -32.62937 -30.35513 -29.15008 -26.99777 -24.32478 -23.44837 -21.50978 -20.77472 -19.32286 -16.92334 -16.02959 -15.12425 -14.86545 -14.56052 -14.13784 -13.93436 -13.29552 -13.13387 -12.96718 -12.33845 -12.06808 -11.96757 -11.41109 -11.21696 -11.15143 -10.78295 -10.75314 -10.35400 -10.02728 -9.31162 -9.00404 -8.53995 -8.26777 -7.45695 -6.08911 -4.11377 2.15143 2.78530 3.09311 3.30889 3.34764 3.38087 4.39027 4.77023 4.92523 5.09566 5.18656 5.27060 5.31179 5.39902 5.58602 5.69917 5.82268 5.96553 5.97252 6.06015 6.12704 6.45749 6.92489 7.10573 7.29492 7.32851 7.69493 7.99623 8.03598 8.25774 8.48249 8.97102 9.53888 11.02070 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.043978 B = 0.006519 C = 0.006232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.535514 B = 4293.882459 C = 4491.904665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.125 3.875 3 N -0.356 5.356 4 N -0.309 5.309 5 C 0.041 3.959 6 C -0.283 4.283 7 C 0.109 3.891 8 C 0.114 3.886 9 N -0.685 5.685 10 C 0.195 3.805 11 C -0.517 4.517 12 H 0.062 0.938 13 C 0.057 3.943 14 N -0.898 5.898 15 Si 0.900 3.100 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.276 1.276 19 H 0.060 0.940 20 H 0.075 0.925 21 H 0.059 0.941 22 H 0.107 0.893 23 H 0.089 0.911 24 H 0.177 0.823 25 H 0.142 0.858 26 H 0.076 0.924 27 H 0.048 0.952 28 H 0.335 0.665 29 H 0.029 0.971 30 H -0.010 1.010 31 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.666 4.165 10.896 12.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.004 3.996 3 N -0.138 5.138 4 N -0.131 5.131 5 C -0.144 4.144 6 C -0.313 4.313 7 C -0.020 4.020 8 C -0.017 4.017 9 N -0.317 5.317 10 C 0.069 3.931 11 C -0.556 4.556 12 H 0.080 0.920 13 C -0.144 4.144 14 N -0.537 5.537 15 Si 0.728 3.272 16 H -0.201 1.201 17 H -0.213 1.213 18 H -0.202 1.202 19 H 0.080 0.920 20 H 0.094 0.906 21 H 0.079 0.921 22 H 0.125 0.875 23 H 0.108 0.892 24 H 0.194 0.806 25 H 0.160 0.840 26 H 0.094 0.906 27 H 0.066 0.934 28 H 0.152 0.848 29 H 0.047 0.953 30 H 0.008 0.992 31 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.249 2.610 11.965 13.323 hybrid contribution 1.081 0.907 -1.551 2.096 sum -4.168 3.516 10.414 11.755 Atomic orbital electron populations 1.22172 0.94764 1.02892 1.02730 1.21722 0.94671 0.78126 1.05093 1.48592 1.50370 1.11801 1.03074 1.77249 1.22730 1.04411 1.08699 1.23692 0.99979 0.95746 0.94993 1.21225 1.16205 0.98915 0.94989 1.21244 0.98441 0.91508 0.90803 1.20514 0.96500 0.97669 0.87010 1.60729 1.02005 1.42250 1.26702 1.19587 0.98101 0.94642 0.80820 1.21116 1.01549 1.35912 0.96979 0.91964 1.24978 0.96796 0.96275 0.96393 1.69943 1.31973 1.46166 1.05591 0.86524 0.83200 0.80094 0.77377 1.20145 1.21282 1.20204 0.92042 0.90596 0.92142 0.87519 0.89230 0.80556 0.84019 0.90589 0.93387 0.84806 0.95285 0.99241 0.92761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.89 10.24 37.16 0.38 -1.51 16 2 C 0.13 1.70 6.85 -4.04 -0.03 1.67 16 3 N -0.36 -5.74 3.61 -57.14 -0.21 -5.95 16 4 N -0.31 -5.08 12.58 30.62 0.39 -4.70 16 5 C 0.04 0.60 12.03 -17.37 -0.21 0.39 16 6 C -0.28 -4.31 10.72 -40.01 -0.43 -4.74 16 7 C 0.11 1.80 6.44 -82.27 -0.53 1.27 16 8 C 0.11 1.99 5.62 -4.98 -0.03 1.96 16 9 N -0.69 -14.29 6.48 -116.34 -0.75 -15.05 16 10 C 0.19 4.93 5.44 -4.98 -0.03 4.90 16 11 C -0.52 -14.38 9.32 -34.44 -0.32 -14.70 16 12 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 13 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 14 N -0.90 -26.32 13.29 55.43 0.74 -25.58 16 15 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 16 16 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 17 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 19 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 20 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 21 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 22 H 0.11 1.55 7.78 -51.93 -0.40 1.14 16 23 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 24 H 0.18 1.89 8.06 -52.49 -0.42 1.46 16 25 H 0.14 1.90 8.06 -52.49 -0.42 1.48 16 26 H 0.08 1.29 7.98 -51.93 -0.41 0.87 16 27 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.34 6.91 8.71 -39.30 -0.34 6.57 16 29 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 30 H -0.01 -0.27 8.14 -51.93 -0.42 -0.70 16 31 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 272.63 15.07 4.11 4.11 Total: -1.00 -30.60 272.63 -6.55 -37.15 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -4.51 Total: 2.87 kcal Atomic # 6 Polarization: -7.97 SS G_CDS: -1.29 Total: -9.25 kcal Atomic # 7 Polarization: -51.44 SS G_CDS: 0.16 Total: -51.27 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -30.60 -6.55 -37.15 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000164828907.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.835 kcal (2) G-P(sol) polarization free energy of solvation -30.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds