Wall clock time and date at job start Sun Mar 29 2020 21:59:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46502 * 109.47011 * 2 1 4 4 N 1.40090 * 126.03499 * 90.02445 * 3 2 1 5 5 C 1.30836 * 108.20534 * 179.97438 * 4 3 2 6 6 C 1.39870 * 108.20019 * 0.24683 * 5 4 3 7 7 C 1.34942 * 126.03991 * 270.02750 * 3 2 1 8 8 C 1.50696 * 126.12855 * 359.97438 * 7 3 2 9 9 N 1.46898 * 109.47460 * 275.00164 * 8 7 3 10 10 C 1.46895 * 111.00180 * 179.97438 * 9 8 7 11 11 C 1.50701 * 109.47340 * 179.97438 * 10 9 8 12 12 H 1.08000 * 120.00026 * 0.02562 * 11 10 9 13 13 C 1.37879 * 120.00157 * 179.97438 * 11 10 9 14 14 N 1.31512 * 119.99955 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99800 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47005 * 60.00517 * 15 13 11 17 17 H 1.48504 * 109.46652 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47172 * 299.99903 * 15 13 11 19 19 H 1.08998 * 109.46942 * 59.99983 * 1 2 3 20 20 H 1.09000 * 109.46943 * 179.97438 * 1 2 3 21 21 H 1.08999 * 109.46678 * 299.99417 * 1 2 3 22 22 H 1.09004 * 109.47115 * 240.00426 * 2 1 3 23 23 H 1.09002 * 109.47382 * 120.00180 * 2 1 3 24 24 H 1.08002 * 125.89537 * 179.97438 * 5 4 3 25 25 H 1.07998 * 126.03441 * 179.71717 * 6 5 4 26 26 H 1.09005 * 109.46760 * 35.00467 * 8 7 3 27 27 H 1.08998 * 109.47394 * 154.99715 * 8 7 3 28 28 H 1.00894 * 111.00129 * 303.95323 * 9 8 7 29 29 H 1.09004 * 109.47674 * 300.00444 * 10 9 8 30 30 H 1.09004 * 109.46981 * 60.00216 * 10 9 8 31 31 H 0.97000 * 120.00082 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2935 2.1581 1.1328 5 6 2.7090 3.3322 0.7322 6 6 2.7064 3.3428 -0.6664 7 6 2.2825 2.1300 -1.0912 8 6 2.1285 1.6949 -2.5257 9 7 3.3412 0.9858 -2.9553 10 6 3.2266 0.5453 -4.3519 11 6 4.4865 -0.1760 -4.7562 12 1 5.2917 -0.2956 -4.0464 13 6 4.6110 -0.6841 -6.0319 14 7 3.6303 -0.5389 -6.8960 15 14 6.1725 -1.5787 -6.5327 16 1 6.3690 -2.7604 -5.6551 17 1 6.0566 -2.0239 -7.9447 18 1 7.3332 -0.6625 -6.3967 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8901 22 1 1.8934 -0.5138 -0.8901 23 1 1.8934 -0.5139 0.8900 24 1 2.9992 4.1531 1.3712 25 1 2.9937 4.1719 -1.2961 26 1 1.2687 1.0307 -2.6136 27 1 1.9770 2.5707 -3.1567 28 1 4.1611 1.5585 -2.8225 29 1 2.3745 -0.1270 -4.4522 30 1 3.0825 1.4129 -4.9959 31 1 3.7180 -0.8960 -7.7936 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000164828907.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:57 Heat of formation + Delta-G solvation = 46.765287 kcal Electronic energy + Delta-G solvation = -13365.562933 eV Core-core repulsion = 11068.474948 eV Total energy + Delta-G solvation = -2297.087985 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.13982 -37.21326 -35.33709 -34.62791 -31.84307 -30.24846 -28.81159 -25.96513 -24.56740 -23.44129 -21.93774 -20.57397 -18.70567 -17.63529 -16.73777 -16.23209 -16.13090 -15.46719 -15.21462 -14.91082 -14.61957 -14.13106 -13.87396 -13.43607 -13.31240 -13.03978 -12.76541 -12.63155 -12.49249 -12.19832 -12.01779 -11.58838 -11.35508 -10.66296 -10.23764 -9.49240 -9.20272 -8.23067 -6.33904 0.91189 1.42382 1.44848 1.53056 1.65006 1.93138 2.40390 3.10804 3.51165 3.69952 3.80353 4.11273 4.18553 4.22415 4.40379 4.54711 4.71454 4.75528 4.85327 4.95594 5.04975 5.15199 5.23067 5.28111 5.58813 5.81823 5.98304 6.11158 6.37083 6.60876 6.82000 6.85302 7.36818 8.88019 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.043978 B = 0.006519 C = 0.006232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.535514 B = 4293.882459 C = 4491.904665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.119 3.881 3 N -0.363 5.363 4 N -0.330 5.330 5 C 0.045 3.955 6 C -0.284 4.284 7 C 0.090 3.910 8 C 0.122 3.878 9 N -0.682 5.682 10 C 0.210 3.790 11 C -0.538 4.538 12 H 0.062 0.938 13 C 0.005 3.995 14 N -0.931 5.931 15 Si 0.970 3.030 16 H -0.270 1.270 17 H -0.282 1.282 18 H -0.268 1.268 19 H 0.052 0.948 20 H 0.098 0.902 21 H 0.059 0.941 22 H 0.093 0.907 23 H 0.099 0.901 24 H 0.214 0.786 25 H 0.159 0.841 26 H 0.077 0.923 27 H 0.054 0.946 28 H 0.337 0.663 29 H 0.007 0.993 30 H -0.032 1.032 31 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.995 4.334 11.718 13.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.001 4.001 3 N -0.146 5.146 4 N -0.152 5.152 5 C -0.140 4.140 6 C -0.314 4.314 7 C -0.039 4.039 8 C -0.009 4.009 9 N -0.313 5.313 10 C 0.083 3.917 11 C -0.576 4.576 12 H 0.080 0.920 13 C -0.193 4.193 14 N -0.571 5.571 15 Si 0.794 3.206 16 H -0.195 1.195 17 H -0.207 1.207 18 H -0.193 1.193 19 H 0.071 0.929 20 H 0.117 0.883 21 H 0.078 0.922 22 H 0.111 0.889 23 H 0.118 0.882 24 H 0.230 0.770 25 H 0.176 0.824 26 H 0.095 0.905 27 H 0.073 0.927 28 H 0.154 0.846 29 H 0.025 0.975 30 H -0.014 1.014 31 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.584 2.782 12.808 13.886 hybrid contribution 0.836 0.904 -1.750 2.140 sum -3.748 3.686 11.058 12.244 Atomic orbital electron populations 1.22106 0.93036 1.04240 1.02198 1.21867 0.96104 0.77309 1.04866 1.48825 1.50498 1.12431 1.02876 1.77225 1.23535 1.05343 1.09109 1.24300 0.98612 0.95979 0.95130 1.21548 1.15216 0.98838 0.95780 1.21136 1.00065 0.92464 0.90241 1.20421 0.94875 0.97567 0.88048 1.60573 1.03559 1.43435 1.23781 1.19225 0.96467 0.93203 0.82808 1.21478 1.02351 1.36374 0.97413 0.91990 1.25879 1.00147 0.96946 0.96347 1.70061 1.34003 1.47052 1.06012 0.85429 0.79105 0.78920 0.77112 1.19461 1.20714 1.19259 0.92891 0.88335 0.92193 0.88919 0.88223 0.76965 0.82378 0.90504 0.92748 0.84556 0.97462 1.01406 0.92529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.41 10.24 71.98 0.74 -2.67 16 2 C 0.12 3.16 6.85 86.38 0.59 3.75 16 3 N -0.36 -11.38 3.61 -334.69 -1.21 -12.59 16 4 N -0.33 -10.31 12.58 -57.02 -0.72 -11.03 16 5 C 0.04 1.18 12.03 85.24 1.03 2.21 16 6 C -0.28 -8.11 10.72 21.99 0.24 -7.87 16 7 C 0.09 2.88 6.44 41.40 0.27 3.15 16 8 C 0.12 4.22 5.62 85.56 0.48 4.70 16 9 N -0.68 -28.59 6.48 -521.99 -3.38 -31.97 16 10 C 0.21 10.86 5.44 85.56 0.47 11.33 16 11 C -0.54 -30.08 9.32 25.60 0.24 -29.84 16 12 H 0.06 3.39 7.81 -2.91 -0.02 3.37 16 13 C 0.01 0.31 5.46 84.66 0.46 0.77 16 14 N -0.93 -55.02 13.29 21.45 0.28 -54.74 16 15 Si 0.97 43.59 29.54 68.60 2.03 45.62 16 16 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 17 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 18 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 19 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 20 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 21 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 22 H 0.09 2.70 7.78 -2.38 -0.02 2.68 16 23 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 24 H 0.21 3.81 8.06 -2.91 -0.02 3.78 16 25 H 0.16 3.88 8.06 -2.91 -0.02 3.86 16 26 H 0.08 2.63 7.98 -2.38 -0.02 2.61 16 27 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 28 H 0.34 13.87 8.71 -89.70 -0.78 13.08 16 29 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 30 H -0.03 -1.75 8.14 -2.38 -0.02 -1.77 16 31 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 Total: -1.00 -64.29 272.63 1.83 -62.46 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: 0.33 Total: 16.73 kcal Atomic # 6 Polarization: -18.98 SS G_CDS: 4.50 Total: -14.48 kcal Atomic # 7 Polarization: -105.31 SS G_CDS: -5.02 Total: -110.33 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Total: -64.29 1.83 -62.46 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000164828907.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.225 kcal (2) G-P(sol) polarization free energy of solvation -64.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds