Wall clock time and date at job start Sun Mar 29 2020 21:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36911 * 120.00021 * 2 1 4 4 H 1.07994 * 119.99661 * 149.50908 * 3 2 1 5 5 C 1.39015 * 119.99970 * 329.51078 * 3 2 1 6 6 N 1.31384 * 120.00222 * 161.08943 * 5 3 2 7 7 Si 1.86804 * 119.99769 * 341.08583 * 5 3 2 8 8 H 1.48500 * 109.46857 * 93.48129 * 7 5 3 9 9 H 1.48506 * 109.46676 * 213.47733 * 7 5 3 10 10 H 1.48494 * 109.47276 * 333.47473 * 7 5 3 11 11 C 1.34782 * 119.99721 * 179.97438 * 2 1 3 12 12 O 1.21607 * 119.99814 * 174.63899 * 11 2 1 13 13 C 1.47602 * 120.00157 * 354.36288 * 11 2 1 14 14 C 1.41541 * 126.52672 * 185.83194 * 13 11 2 15 15 C 1.35351 * 105.50792 * 179.90411 * 14 13 11 16 16 N 1.35053 * 107.23620 * 0.35253 * 15 14 13 17 17 C 1.46501 * 124.87575 * 179.73888 * 16 15 14 18 18 N 1.28469 * 110.24207 * 359.76760 * 16 15 14 19 19 H 1.09005 * 109.47321 * 234.79486 * 1 2 3 20 20 H 1.08998 * 109.47416 * 354.79144 * 1 2 3 21 21 H 1.08995 * 109.47257 * 114.79260 * 1 2 3 22 22 H 0.96995 * 120.00149 * 179.97438 * 6 5 3 23 23 H 1.08001 * 127.24559 * 0.02562 * 14 13 11 24 24 H 1.07990 * 126.38075 * 180.08473 * 15 14 13 25 25 H 1.08997 * 109.47346 * 270.00611 * 17 16 15 26 26 H 1.09002 * 109.47057 * 30.00621 * 17 16 15 27 27 H 1.09004 * 109.46769 * 150.00094 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1495 1.1857 0.0000 4 1 3.1175 1.2503 0.4746 5 6 1.5986 2.3064 -0.6108 6 7 2.0440 3.5049 -0.3087 7 14 0.2252 2.1081 -1.8614 8 1 -1.0877 2.2331 -1.1787 9 1 0.3455 3.1627 -2.9000 10 1 0.3260 0.7711 -2.4996 11 6 2.1388 -1.1673 0.0005 12 8 3.3509 -1.1696 -0.0979 13 6 1.4062 -2.4424 0.1267 14 6 1.9753 -3.7316 0.2583 15 6 0.9267 -4.5832 0.3430 16 7 -0.1989 -3.8418 0.2580 17 6 -1.5611 -4.3789 0.3020 18 7 0.0967 -2.5979 0.1324 19 1 -0.3634 -0.5925 0.8397 20 1 -0.3634 1.0234 0.0933 21 1 -0.3633 -0.4309 -0.9329 22 1 1.6598 4.2868 -0.7352 23 1 3.0253 -3.9827 0.2873 24 1 0.9802 -5.6562 0.4532 25 1 -1.8907 -4.6169 -0.7093 26 1 -1.5758 -5.2828 0.9111 27 1 -2.2304 -3.6367 0.7371 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218035318.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:11 Heat of formation + Delta-G solvation = 72.524748 kcal Electronic energy + Delta-G solvation = -13689.277762 eV Core-core repulsion = 11257.473697 eV Total energy + Delta-G solvation = -2431.804065 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.090 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.16103 -38.24100 -34.73654 -33.11608 -31.96076 -30.30545 -27.44717 -26.26966 -24.93581 -21.90021 -20.96801 -18.84870 -17.07245 -16.80417 -15.98656 -15.78463 -15.30416 -14.14082 -13.74687 -13.52342 -13.00209 -12.74549 -12.54824 -12.39787 -12.24274 -11.94019 -11.76083 -10.59228 -10.47878 -10.02300 -9.80474 -9.15335 -8.84199 -8.65410 -8.58197 -7.72338 -6.36318 -3.86664 2.16819 2.63015 2.79337 3.12526 3.28591 3.33537 4.18592 4.35864 4.50222 4.62526 5.01408 5.03051 5.15557 5.25719 5.38786 5.76739 6.10400 6.13095 6.20972 6.36516 6.54618 6.85322 7.10073 7.58632 8.27917 8.32753 8.61297 8.99819 9.36060 9.85673 10.75267 Molecular weight = 209.09amu Principal moments of inertia in cm(-1) A = 0.045182 B = 0.010638 C = 0.009058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.564412 B = 2631.357391 C = 3090.425691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.448 5.448 3 C -0.309 4.309 4 H 0.112 0.888 5 C 0.055 3.945 6 N -0.863 5.863 7 Si 0.887 3.113 8 H -0.276 1.276 9 H -0.289 1.289 10 H -0.264 1.264 11 C 0.530 3.470 12 O -0.565 6.565 13 C 0.016 3.984 14 C -0.188 4.188 15 C -0.030 4.030 16 N -0.303 5.303 17 C 0.092 3.908 18 N -0.275 5.275 19 H 0.066 0.934 20 H 0.071 0.929 21 H 0.050 0.950 22 H 0.275 0.725 23 H 0.157 0.843 24 H 0.174 0.826 25 H 0.078 0.922 26 H 0.089 0.911 27 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.712 -14.644 0.720 17.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.168 5.168 3 C -0.436 4.436 4 H 0.130 0.870 5 C -0.151 4.151 6 N -0.500 5.500 7 Si 0.714 3.286 8 H -0.202 1.202 9 H -0.216 1.216 10 H -0.188 1.188 11 C 0.317 3.683 12 O -0.447 6.447 13 C -0.145 4.145 14 C -0.216 4.216 15 C -0.172 4.172 16 N -0.091 5.091 17 C -0.049 4.049 18 N -0.110 5.110 19 H 0.084 0.916 20 H 0.089 0.911 21 H 0.069 0.931 22 H 0.085 0.915 23 H 0.175 0.825 24 H 0.191 0.809 25 H 0.096 0.904 26 H 0.108 0.892 27 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -10.257 -13.877 0.583 17.266 hybrid contribution -0.183 -0.530 -0.636 0.848 sum -10.440 -14.407 -0.052 17.792 Atomic orbital electron populations 1.22100 0.82477 1.01645 1.01456 1.43590 1.04707 1.05434 1.63045 1.19232 1.05688 0.83620 1.35103 0.87031 1.25356 0.98053 0.94753 0.96919 1.69709 1.42379 0.97719 1.40203 0.86899 0.81347 0.78505 0.81819 1.20224 1.21630 1.18827 1.16746 0.86526 0.81084 0.83946 1.90646 1.12989 1.85908 1.55119 1.22543 0.89031 0.96419 1.06544 1.21762 0.99997 0.91154 1.08713 1.22707 0.85955 0.98782 1.09785 1.45450 1.07186 1.04155 1.52321 1.22007 0.79155 1.00055 1.03652 1.73878 1.17222 0.99277 1.20656 0.91555 0.91067 0.93140 0.91484 0.82516 0.80861 0.90368 0.89249 0.88920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.52 6.79 59.85 0.41 1.93 15 2 N -0.45 -12.05 2.72 -123.36 -0.34 -12.39 15 3 C -0.31 -9.24 9.52 -15.00 -0.14 -9.38 15 4 H 0.11 3.68 7.82 -52.49 -0.41 3.27 15 5 C 0.05 1.58 5.22 -17.45 -0.09 1.49 15 6 N -0.86 -25.58 13.96 55.50 0.77 -24.81 15 7 Si 0.89 21.61 24.35 -169.99 -4.14 17.47 15 8 H -0.28 -6.22 6.70 56.52 0.38 -5.85 15 9 H -0.29 -6.98 7.11 56.52 0.40 -6.57 15 10 H -0.26 -6.50 6.59 56.52 0.37 -6.13 15 11 C 0.53 14.03 7.62 -12.44 -0.09 13.93 15 12 O -0.57 -16.65 16.75 5.27 0.09 -16.56 15 13 C 0.02 0.34 6.86 -82.77 -0.57 -0.23 15 14 C -0.19 -3.33 10.81 -39.35 -0.43 -3.76 15 15 C -0.03 -0.40 11.46 -17.16 -0.20 -0.60 15 16 N -0.30 -4.34 3.70 -68.13 -0.25 -4.60 15 17 C 0.09 0.76 11.31 59.85 0.68 1.44 15 18 N -0.28 -5.21 8.66 33.41 0.29 -4.92 15 19 H 0.07 1.37 6.71 -51.93 -0.35 1.03 15 20 H 0.07 1.63 4.62 -51.93 -0.24 1.39 15 21 H 0.05 1.10 6.65 -51.93 -0.35 0.76 15 22 H 0.27 7.49 8.31 -40.82 -0.34 7.15 15 23 H 0.16 2.61 8.06 -52.49 -0.42 2.19 15 24 H 0.17 1.50 8.06 -52.49 -0.42 1.08 15 25 H 0.08 0.54 8.14 -51.93 -0.42 0.12 15 26 H 0.09 0.45 8.13 -51.93 -0.42 0.03 15 27 H 0.09 0.73 8.14 -51.93 -0.42 0.31 15 LS Contribution 234.76 15.07 3.54 3.54 Total: -1.00 -35.55 234.76 -3.12 -38.67 By element: Atomic # 1 Polarization: 1.42 SS G_CDS: -2.64 Total: -1.23 kcal Atomic # 6 Polarization: 5.25 SS G_CDS: -0.44 Total: 4.82 kcal Atomic # 7 Polarization: -47.19 SS G_CDS: 0.48 Total: -46.71 kcal Atomic # 8 Polarization: -16.65 SS G_CDS: 0.09 Total: -16.56 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.14 Total: 17.47 kcal Total LS contribution 3.54 Total: 3.54 kcal Total: -35.55 -3.12 -38.67 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218035318.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.192 kcal (2) G-P(sol) polarization free energy of solvation -35.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds