Wall clock time and date at job start Sun Mar 29 2020 21:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36911 * 120.00021 * 2 1 4 4 H 1.07994 * 119.99661 * 149.50908 * 3 2 1 5 5 C 1.39015 * 119.99970 * 329.51078 * 3 2 1 6 6 N 1.31384 * 120.00222 * 161.08943 * 5 3 2 7 7 Si 1.86804 * 119.99769 * 341.08583 * 5 3 2 8 8 H 1.48500 * 109.46857 * 93.48129 * 7 5 3 9 9 H 1.48506 * 109.46676 * 213.47733 * 7 5 3 10 10 H 1.48494 * 109.47276 * 333.47473 * 7 5 3 11 11 C 1.34782 * 119.99721 * 179.97438 * 2 1 3 12 12 O 1.21607 * 119.99814 * 174.63899 * 11 2 1 13 13 C 1.47602 * 120.00157 * 354.36288 * 11 2 1 14 14 C 1.41541 * 126.52672 * 185.83194 * 13 11 2 15 15 C 1.35351 * 105.50792 * 179.90411 * 14 13 11 16 16 N 1.35053 * 107.23620 * 0.35253 * 15 14 13 17 17 C 1.46501 * 124.87575 * 179.73888 * 16 15 14 18 18 N 1.28469 * 110.24207 * 359.76760 * 16 15 14 19 19 H 1.09005 * 109.47321 * 234.79486 * 1 2 3 20 20 H 1.08998 * 109.47416 * 354.79144 * 1 2 3 21 21 H 1.08995 * 109.47257 * 114.79260 * 1 2 3 22 22 H 0.96995 * 120.00149 * 179.97438 * 6 5 3 23 23 H 1.08001 * 127.24559 * 0.02562 * 14 13 11 24 24 H 1.07990 * 126.38075 * 180.08473 * 15 14 13 25 25 H 1.08997 * 109.47346 * 270.00611 * 17 16 15 26 26 H 1.09002 * 109.47057 * 30.00621 * 17 16 15 27 27 H 1.09004 * 109.46769 * 150.00094 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1495 1.1857 0.0000 4 1 3.1175 1.2503 0.4746 5 6 1.5986 2.3064 -0.6108 6 7 2.0440 3.5049 -0.3087 7 14 0.2252 2.1081 -1.8614 8 1 -1.0877 2.2331 -1.1787 9 1 0.3455 3.1627 -2.9000 10 1 0.3260 0.7711 -2.4996 11 6 2.1388 -1.1673 0.0005 12 8 3.3509 -1.1696 -0.0979 13 6 1.4062 -2.4424 0.1267 14 6 1.9753 -3.7316 0.2583 15 6 0.9267 -4.5832 0.3430 16 7 -0.1989 -3.8418 0.2580 17 6 -1.5611 -4.3789 0.3020 18 7 0.0967 -2.5979 0.1324 19 1 -0.3634 -0.5925 0.8397 20 1 -0.3634 1.0234 0.0933 21 1 -0.3633 -0.4309 -0.9329 22 1 1.6598 4.2868 -0.7352 23 1 3.0253 -3.9827 0.2873 24 1 0.9802 -5.6562 0.4532 25 1 -1.8907 -4.6169 -0.7093 26 1 -1.5758 -5.2828 0.9111 27 1 -2.2304 -3.6367 0.7371 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218035318.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:10 Heat of formation + Delta-G solvation = 44.664480 kcal Electronic energy + Delta-G solvation = -13690.485874 eV Core-core repulsion = 11257.473697 eV Total energy + Delta-G solvation = -2433.012177 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.090 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -43.45601 -40.25583 -36.84161 -34.45772 -33.93909 -31.61273 -28.83955 -28.12406 -26.72047 -23.51958 -22.18165 -20.53765 -19.17322 -18.21131 -17.74149 -17.17816 -17.00753 -15.99392 -15.61158 -14.76457 -14.58312 -14.35312 -14.08405 -13.93828 -13.71058 -13.41362 -13.25177 -12.56530 -12.34858 -11.85478 -11.59464 -11.22615 -10.71426 -10.10853 -9.97895 -9.78661 -8.56878 -6.15812 0.69490 1.18816 1.27270 1.37304 1.42515 1.78554 2.13935 2.43058 2.69308 3.02537 3.52035 4.07152 4.12166 4.32521 4.48850 4.55676 4.57946 4.75668 4.78393 4.86070 4.89477 5.34408 5.53177 5.93602 6.06037 6.47023 6.79935 7.04031 7.20278 7.77492 8.59913 Molecular weight = 209.09amu Principal moments of inertia in cm(-1) A = 0.045182 B = 0.010638 C = 0.009058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.564412 B = 2631.357391 C = 3090.425691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.464 5.464 3 C -0.339 4.339 4 H 0.054 0.946 5 C 0.012 3.988 6 N -0.905 5.905 7 Si 0.958 3.042 8 H -0.236 1.236 9 H -0.282 1.282 10 H -0.268 1.268 11 C 0.524 3.476 12 O -0.615 6.615 13 C -0.033 4.033 14 C -0.216 4.216 15 C 0.009 3.991 16 N -0.287 5.287 17 C 0.077 3.923 18 N -0.283 5.283 19 H 0.085 0.915 20 H 0.069 0.931 21 H 0.063 0.937 22 H 0.284 0.716 23 H 0.154 0.846 24 H 0.235 0.765 25 H 0.099 0.901 26 H 0.132 0.868 27 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.352 -17.596 0.123 22.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.184 5.184 3 C -0.467 4.467 4 H 0.072 0.928 5 C -0.190 4.190 6 N -0.542 5.542 7 Si 0.780 3.220 8 H -0.160 1.160 9 H -0.208 1.208 10 H -0.192 1.192 11 C 0.313 3.687 12 O -0.500 6.500 13 C -0.191 4.191 14 C -0.245 4.245 15 C -0.134 4.134 16 N -0.076 5.076 17 C -0.061 4.061 18 N -0.121 5.121 19 H 0.104 0.896 20 H 0.088 0.912 21 H 0.082 0.918 22 H 0.094 0.906 23 H 0.172 0.828 24 H 0.251 0.749 25 H 0.118 0.882 26 H 0.151 0.849 27 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -13.935 -16.813 0.008 21.837 hybrid contribution 0.928 0.203 -0.372 1.021 sum -13.006 -16.611 -0.364 21.100 Atomic orbital electron populations 1.22161 0.79758 1.01974 1.02945 1.43689 1.06368 1.04560 1.63741 1.18855 1.04821 0.86028 1.36980 0.92812 1.26157 1.01169 0.93670 0.98048 1.69805 1.44412 0.98734 1.41259 0.85798 0.79338 0.78181 0.78684 1.16038 1.20832 1.19237 1.17541 0.86417 0.82753 0.81951 1.90580 1.15396 1.87192 1.56783 1.21880 0.90587 0.95207 1.11382 1.21961 1.01460 0.90501 1.10568 1.23409 0.83877 1.00620 1.05520 1.46081 1.09759 1.02865 1.48865 1.22616 0.75816 1.01611 1.06057 1.73710 1.15556 1.02074 1.20743 0.89621 0.91233 0.91823 0.90590 0.82792 0.74881 0.88244 0.84930 0.88497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 3.29 6.79 127.77 0.87 4.16 15 2 N -0.46 -25.83 2.72 -662.46 -1.80 -27.64 15 3 C -0.34 -21.54 9.52 84.09 0.80 -20.74 15 4 H 0.05 3.92 7.82 -2.91 -0.02 3.89 15 5 C 0.01 0.73 5.22 84.95 0.44 1.17 15 6 N -0.90 -55.47 13.96 21.68 0.30 -55.17 15 7 Si 0.96 44.38 24.35 68.60 1.67 46.05 15 8 H -0.24 -9.48 6.70 99.48 0.67 -8.81 15 9 H -0.28 -12.65 7.11 99.48 0.71 -11.94 15 10 H -0.27 -12.52 6.59 99.48 0.66 -11.86 15 11 C 0.52 29.03 7.62 86.71 0.66 29.69 15 12 O -0.61 -38.81 16.75 -4.05 -0.07 -38.88 15 13 C -0.03 -1.41 6.86 42.43 0.29 -1.11 15 14 C -0.22 -7.38 10.81 22.42 0.24 -7.14 15 15 C 0.01 0.21 11.46 83.53 0.96 1.16 15 16 N -0.29 -6.86 3.70 -369.45 -1.37 -8.23 15 17 C 0.08 0.80 11.31 127.77 1.44 2.24 15 18 N -0.28 -10.00 8.66 -48.20 -0.42 -10.42 15 19 H 0.09 3.43 6.71 -2.38 -0.02 3.41 15 20 H 0.07 3.07 4.62 -2.39 -0.01 3.06 15 21 H 0.06 2.65 6.65 -2.39 -0.02 2.63 15 22 H 0.28 15.77 8.31 -92.71 -0.77 15.00 15 23 H 0.15 5.14 8.06 -2.91 -0.02 5.12 15 24 H 0.23 2.25 8.06 -2.92 -0.02 2.23 15 25 H 0.10 0.74 8.14 -2.39 -0.02 0.72 15 26 H 0.13 0.34 8.13 -2.39 -0.02 0.32 15 27 H 0.10 1.01 8.14 -2.39 -0.02 0.99 15 Total: -1.00 -85.20 234.76 5.11 -80.09 By element: Atomic # 1 Polarization: 3.67 SS G_CDS: 1.09 Total: 4.76 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: 5.71 Total: 9.43 kcal Atomic # 7 Polarization: -98.17 SS G_CDS: -3.29 Total: -101.46 kcal Atomic # 8 Polarization: -38.81 SS G_CDS: -0.07 Total: -38.88 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 1.67 Total: 46.05 kcal Total: -85.20 5.11 -80.09 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218035318.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.756 kcal (2) G-P(sol) polarization free energy of solvation -85.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.091 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds