Wall clock time and date at job start Sun Mar 29 2020 22:00:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36936 * 119.99486 * 2 1 4 4 H 1.08003 * 119.99658 * 162.45294 * 3 2 1 5 5 C 1.38809 * 120.00286 * 342.45152 * 3 2 1 6 6 N 1.31621 * 120.00227 * 344.98982 * 5 3 2 7 7 Si 1.86802 * 120.00130 * 164.99430 * 5 3 2 8 8 H 1.48502 * 109.47123 * 359.97438 * 7 5 3 9 9 H 1.48504 * 109.47253 * 119.99665 * 7 5 3 10 10 H 1.48493 * 109.47038 * 239.99824 * 7 5 3 11 11 C 1.46494 * 120.00416 * 180.28067 * 2 1 3 12 12 C 1.53002 * 109.47090 * 269.72181 * 11 2 1 13 13 C 1.50696 * 109.47153 * 179.97438 * 12 11 2 14 14 C 1.39868 * 126.04079 * 90.02457 * 13 12 11 15 15 N 1.30839 * 108.20852 * 179.97438 * 14 13 12 16 16 N 1.40088 * 108.19934 * 0.02562 * 15 14 13 17 17 C 1.46504 * 126.03383 * 179.97438 * 16 15 14 18 18 C 1.34947 * 107.92748 * 359.75443 * 16 15 14 19 19 H 1.08995 * 109.47046 * 84.96311 * 1 2 3 20 20 H 1.08998 * 109.46435 * 204.95945 * 1 2 3 21 21 H 1.08990 * 109.47241 * 324.95460 * 1 2 3 22 22 H 0.96989 * 120.00338 * 180.02562 * 6 5 3 23 23 H 1.09001 * 109.47367 * 29.72148 * 11 2 1 24 24 H 1.08998 * 109.47389 * 149.72090 * 11 2 1 25 25 H 1.08992 * 109.47059 * 300.00051 * 12 11 2 26 26 H 1.09000 * 109.46941 * 60.00250 * 12 11 2 27 27 H 1.08000 * 125.89661 * 359.97438 * 14 13 12 28 28 H 1.08992 * 109.47245 * 89.97450 * 17 16 15 29 29 H 1.09001 * 109.46936 * 209.97543 * 17 16 15 30 30 H 1.09003 * 109.47322 * 329.96909 * 17 16 15 31 31 H 1.08000 * 126.12681 * 180.24227 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1919 1.2078 0.2820 5 6 1.5039 2.3601 -0.3624 6 7 0.3437 2.3090 -0.9818 7 14 2.2818 4.0128 0.0286 8 1 3.5763 3.7985 0.7242 9 1 2.5151 4.7610 -1.2328 10 1 1.3723 4.7928 0.9058 11 6 2.1976 -1.2686 -0.0062 12 6 2.4587 -1.7138 1.4341 13 6 3.2117 -3.0191 1.4278 14 6 4.6026 -3.1668 1.4219 15 7 4.8779 -4.4459 1.4180 16 7 3.6690 -5.1537 1.4207 17 6 3.5238 -6.6115 1.4174 18 6 2.6618 -4.2556 1.4318 19 1 -0.3633 0.0902 -1.0236 20 1 -0.3632 -0.9317 0.4337 21 1 -0.3633 0.8413 0.5901 22 1 -0.1073 3.1293 -1.2353 23 1 1.6064 -2.0271 -0.5194 24 1 3.1478 -1.1370 -0.5237 25 1 3.0498 -0.9554 1.9473 26 1 1.5084 -1.8455 1.9516 27 1 5.3246 -2.3636 1.4207 28 1 3.4922 -6.9758 2.4442 29 1 2.6000 -6.8835 0.9068 30 1 4.3712 -7.0599 0.8987 31 1 1.6061 -4.4829 1.4402 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226151879.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:27 Heat of formation + Delta-G solvation = 79.291421 kcal Electronic energy + Delta-G solvation = -13359.721476 eV Core-core repulsion = 11064.043930 eV Total energy + Delta-G solvation = -2295.677546 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.03027 -37.70559 -34.80105 -33.55262 -32.11964 -29.48811 -27.88977 -27.23740 -24.89992 -22.33154 -21.91124 -20.87255 -18.65852 -17.61446 -16.85081 -16.23718 -15.60025 -15.42586 -15.06210 -14.67525 -14.36148 -13.77077 -13.54169 -13.49299 -12.98124 -12.89623 -12.71050 -12.60609 -12.27797 -12.03349 -11.87994 -11.61792 -11.25650 -10.59832 -10.28392 -9.31570 -8.69007 -7.77440 -5.20867 1.00263 1.48923 1.50314 1.61004 1.77848 1.90026 2.56221 3.35702 3.68395 3.86560 4.08255 4.36359 4.44026 4.48743 4.67604 4.72351 4.82126 4.87116 4.92537 4.99024 5.05794 5.35531 5.52041 5.58496 5.65726 5.77257 5.79043 6.23576 6.37159 6.78615 7.21050 7.95246 8.36595 9.26474 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.061668 B = 0.006370 C = 0.005910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 453.937962 B = 4394.413636 C = 4736.916120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.178 3.822 2 N -0.624 5.624 3 C -0.254 4.254 4 H 0.073 0.927 5 C -0.060 4.060 6 N -0.944 5.944 7 Si 0.967 3.033 8 H -0.266 1.266 9 H -0.294 1.294 10 H -0.291 1.291 11 C 0.161 3.839 12 C -0.041 4.041 13 C -0.241 4.241 14 C 0.040 3.960 15 N -0.334 5.334 16 N -0.383 5.383 17 C 0.094 3.906 18 C 0.058 3.942 19 H -0.002 1.002 20 H 0.033 0.967 21 H 0.019 0.981 22 H 0.246 0.754 23 H 0.043 0.957 24 H 0.033 0.967 25 H 0.051 0.949 26 H 0.061 0.939 27 H 0.188 0.812 28 H 0.086 0.914 29 H 0.113 0.887 30 H 0.089 0.911 31 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.471 -15.715 5.619 17.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.348 5.348 3 C -0.385 4.385 4 H 0.091 0.909 5 C -0.254 4.254 6 N -0.592 5.592 7 Si 0.795 3.205 8 H -0.190 1.190 9 H -0.221 1.221 10 H -0.218 1.218 11 C 0.035 3.965 12 C -0.082 4.082 13 C -0.253 4.253 14 C -0.145 4.145 15 N -0.157 5.157 16 N -0.165 5.165 17 C -0.045 4.045 18 C -0.088 4.088 19 H 0.016 0.984 20 H 0.051 0.949 21 H 0.038 0.962 22 H 0.055 0.945 23 H 0.062 0.938 24 H 0.052 0.948 25 H 0.070 0.930 26 H 0.080 0.920 27 H 0.205 0.795 28 H 0.105 0.895 29 H 0.131 0.869 30 H 0.108 0.892 31 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 4.293 -16.676 5.556 18.094 hybrid contribution -0.429 1.803 -0.059 1.854 sum 3.864 -14.873 5.497 16.320 Atomic orbital electron populations 1.20535 0.82675 0.96088 0.97363 1.44294 1.02308 1.01893 1.86295 1.19626 0.95674 0.85903 1.37267 0.90932 1.25679 0.98414 1.01450 0.99869 1.70282 1.18525 1.26505 1.43933 0.85197 0.78047 0.80143 0.77067 1.19046 1.22125 1.21828 1.20837 0.94796 0.86139 0.94760 1.20245 0.98193 0.91484 0.98313 1.20256 0.93565 0.95539 1.15983 1.24036 0.96474 0.94223 0.99785 1.77213 1.06322 1.05750 1.26384 1.48795 1.03219 1.07939 1.56593 1.22174 1.05329 0.72495 1.04544 1.22753 0.96052 0.88728 1.01300 0.98360 0.94893 0.96197 0.94451 0.93820 0.94842 0.92994 0.92005 0.79542 0.89532 0.86869 0.89231 0.78085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.01 8.97 127.77 1.15 10.15 16 2 N -0.62 -32.09 2.93 -726.97 -2.13 -34.22 16 3 C -0.25 -14.29 9.70 84.03 0.82 -13.48 16 4 H 0.07 3.95 7.87 -2.91 -0.02 3.93 16 5 C -0.06 -3.45 5.08 84.86 0.43 -3.02 16 6 N -0.94 -57.20 10.51 21.65 0.23 -56.98 16 7 Si 0.97 46.00 29.58 68.60 2.03 48.03 16 8 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 9 H -0.29 -13.99 7.11 99.48 0.71 -13.29 16 10 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 11 C 0.16 6.66 5.63 86.38 0.49 7.15 16 12 C -0.04 -1.44 6.02 29.85 0.18 -1.26 16 13 C -0.24 -7.34 5.35 -20.14 -0.11 -7.45 16 14 C 0.04 1.22 11.96 85.24 1.02 2.24 16 15 N -0.33 -10.14 12.58 -57.02 -0.72 -10.86 16 16 N -0.38 -9.27 4.01 -369.56 -1.48 -10.75 16 17 C 0.09 1.25 11.47 127.77 1.47 2.71 16 18 C 0.06 1.44 11.40 83.54 0.95 2.39 16 19 H 0.00 -0.11 7.48 -2.39 -0.02 -0.12 16 20 H 0.03 1.38 8.04 -2.39 -0.02 1.36 16 21 H 0.02 1.07 7.01 -2.39 -0.02 1.06 16 22 H 0.25 14.45 8.31 -92.72 -0.77 13.67 16 23 H 0.04 1.69 8.07 -2.39 -0.02 1.67 16 24 H 0.03 1.44 8.04 -2.39 -0.02 1.42 16 25 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 26 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 27 H 0.19 5.13 8.06 -2.91 -0.02 5.11 16 28 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.20 3.52 8.06 -2.91 -0.02 3.49 16 Total: -1.00 -69.98 268.16 5.40 -64.58 By element: Atomic # 1 Polarization: -0.32 SS G_CDS: 1.09 Total: 0.77 kcal Atomic # 6 Polarization: -6.96 SS G_CDS: 6.39 Total: -0.57 kcal Atomic # 7 Polarization: -108.71 SS G_CDS: -4.10 Total: -112.81 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.03 kcal Total: -69.98 5.40 -64.58 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226151879.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.870 kcal (2) G-P(sol) polarization free energy of solvation -69.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds