Wall clock time and date at job start Sun Mar 29 2020 21:31:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50699 * 109.46866 * 119.99952 * 2 1 3 5 5 O 1.21285 * 120.00039 * 120.00108 * 4 2 1 6 6 N 1.34780 * 120.00249 * 300.00184 * 4 2 1 7 7 C 1.37088 * 120.00344 * 180.02562 * 6 4 2 8 8 H 1.08003 * 120.00176 * 359.97438 * 7 6 4 9 9 C 1.38952 * 120.00248 * 179.97438 * 7 6 4 10 10 N 1.31418 * 120.00185 * 180.02562 * 9 7 6 11 11 Si 1.86795 * 119.99992 * 359.97438 * 9 7 6 12 12 H 1.48497 * 109.47095 * 89.99972 * 11 9 7 13 13 H 1.48504 * 109.47329 * 210.00227 * 11 9 7 14 14 H 1.48504 * 109.47209 * 330.00060 * 11 9 7 15 15 N 1.46492 * 109.47363 * 239.99860 * 2 1 3 16 16 C 1.34949 * 126.03579 * 325.00408 * 15 2 1 17 17 C 1.35318 * 107.74539 * 179.97438 * 16 15 2 18 18 C 1.39867 * 107.92181 * 359.97438 * 17 16 15 19 19 N 1.30841 * 108.20183 * 359.74201 * 18 17 16 20 20 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.46801 * 300.00112 * 1 2 3 22 22 H 1.09001 * 109.46998 * 59.99708 * 1 2 3 23 23 H 0.96998 * 119.99818 * 359.97438 * 6 4 2 24 24 H 0.96999 * 119.99988 * 179.97438 * 10 9 7 25 25 H 1.07994 * 126.12773 * 359.97438 * 16 15 2 26 26 H 1.08000 * 126.03884 * 179.97438 * 17 16 15 27 27 H 1.07996 * 125.90295 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7296 -1.6965 1.1192 6 7 1.7067 -0.2500 2.4546 7 6 2.1640 -0.8959 3.5740 8 1 2.7850 -1.7740 3.4750 9 6 1.8287 -0.4209 4.8360 10 7 2.2675 -1.0398 5.9091 11 14 0.7554 1.0983 5.0074 12 1 -0.6725 0.6929 5.0531 13 1 1.1071 1.8142 6.2600 14 1 0.9783 1.9955 3.8452 15 7 2.0184 -0.6906 -1.1961 16 6 1.4403 -1.7559 -1.7894 17 6 2.1963 -2.0923 -2.8601 18 6 3.2730 -1.2018 -2.9236 19 7 3.1642 -0.3575 -1.9300 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 1.1493 0.5389 2.5436 24 1 2.0338 -0.7080 6.7900 25 1 0.5362 -2.2511 -1.4674 26 1 2.0025 -2.9048 -3.5447 27 1 4.0566 -1.2075 -3.6668 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226231350.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:26 Heat of formation + Delta-G solvation = 22.380494 kcal Electronic energy + Delta-G solvation = -13481.447882 eV Core-core repulsion = 11047.469399 eV Total energy + Delta-G solvation = -2433.978483 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.090 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.14844 -40.31417 -36.20425 -35.43873 -33.79281 -31.00069 -30.38569 -27.34911 -25.30435 -22.38099 -21.90623 -21.13114 -20.24302 -18.10650 -18.02590 -16.88192 -16.12574 -15.73724 -15.30593 -15.02283 -14.66407 -14.40823 -14.18698 -13.71107 -13.36988 -13.27546 -13.00272 -12.56790 -12.47566 -12.01800 -11.61068 -11.58583 -10.85681 -10.35653 -10.25896 -9.43881 -8.48051 -6.11568 0.98179 1.28417 1.32141 1.43340 1.56296 1.75243 2.03719 2.19179 2.75485 3.05630 3.61620 3.81869 3.96039 4.04294 4.19011 4.60714 4.66372 4.76952 4.90500 5.09092 5.19703 5.43983 5.80477 5.84361 6.12939 6.47969 6.75473 6.84137 7.23927 7.77218 8.69104 Molecular weight = 209.09amu Principal moments of inertia in cm(-1) A = 0.059160 B = 0.008315 C = 0.007786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 473.182234 B = 3366.651604 C = 3595.374890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.151 3.849 3 H 0.131 0.869 4 C 0.434 3.566 5 O -0.618 6.618 6 N -0.572 5.572 7 C -0.335 4.335 8 H 0.052 0.948 9 C -0.009 4.009 10 N -0.928 5.928 11 Si 0.963 3.037 12 H -0.248 1.248 13 H -0.274 1.274 14 H -0.229 1.229 15 N -0.359 5.359 16 C 0.057 3.943 17 C -0.285 4.285 18 C 0.037 3.963 19 N -0.342 5.342 20 H 0.072 0.928 21 H 0.102 0.898 22 H 0.103 0.897 23 H 0.393 0.607 24 H 0.282 0.718 25 H 0.191 0.809 26 H 0.174 0.826 27 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.714 5.971 -13.812 17.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.045 3.955 3 H 0.149 0.851 4 C 0.220 3.780 5 O -0.503 6.503 6 N -0.213 5.213 7 C -0.464 4.464 8 H 0.071 0.929 9 C -0.209 4.209 10 N -0.567 5.567 11 Si 0.781 3.219 12 H -0.171 1.171 13 H -0.199 1.199 14 H -0.153 1.153 15 N -0.141 5.141 16 C -0.089 4.089 17 C -0.314 4.314 18 C -0.149 4.149 19 N -0.163 5.163 20 H 0.091 0.909 21 H 0.121 0.879 22 H 0.122 0.878 23 H 0.229 0.771 24 H 0.092 0.908 25 H 0.207 0.793 26 H 0.191 0.809 27 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -7.767 6.374 -12.943 16.385 hybrid contribution -0.273 -0.416 0.463 0.680 sum -8.040 5.958 -12.480 15.996 Atomic orbital electron populations 1.22216 0.87722 1.04914 1.06176 1.21156 0.98116 0.96808 0.79456 0.85115 1.20982 0.84687 0.87025 0.85304 1.90589 1.42715 1.30210 1.86796 1.41888 1.47137 1.27700 1.04538 1.18974 1.31466 1.11482 0.84498 0.92949 1.26166 0.98913 1.02320 0.93497 1.69800 1.45587 1.42322 0.99040 0.85408 0.79063 0.77296 0.80097 1.17150 1.19911 1.15255 1.48346 1.19438 1.25085 1.21239 1.22977 1.00851 0.90424 0.94619 1.21826 0.98880 1.06846 1.03861 1.24433 0.99845 0.93661 0.96953 1.77238 1.03695 1.26805 1.08612 0.90922 0.87908 0.87830 0.77059 0.90823 0.79250 0.80853 0.77276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.33 8.73 71.98 0.63 -2.70 15 2 C 0.15 4.98 3.73 44.25 0.17 5.14 15 3 H 0.13 3.84 8.14 -2.39 -0.02 3.82 15 4 C 0.43 20.06 7.18 87.66 0.63 20.69 15 5 O -0.62 -35.98 15.99 -3.05 -0.05 -36.03 15 6 N -0.57 -26.57 4.98 -306.99 -1.53 -28.10 15 7 C -0.34 -19.49 10.16 84.04 0.85 -18.63 15 8 H 0.05 3.68 7.39 -2.91 -0.02 3.66 15 9 C -0.01 -0.50 5.50 84.93 0.47 -0.03 15 10 N -0.93 -55.08 13.96 21.66 0.30 -54.78 15 11 Si 0.96 36.97 27.74 68.60 1.90 38.87 15 12 H -0.25 -8.75 7.11 99.48 0.71 -8.04 15 13 H -0.27 -10.56 7.11 99.48 0.71 -9.85 15 14 H -0.23 -7.32 6.52 99.48 0.65 -6.67 15 15 N -0.36 -12.67 3.02 -331.07 -1.00 -13.67 15 16 C 0.06 1.73 10.57 83.54 0.88 2.61 15 17 C -0.29 -7.79 10.80 21.99 0.24 -7.55 15 18 C 0.04 1.09 12.03 85.23 1.02 2.11 15 19 N -0.34 -12.70 12.58 -57.03 -0.72 -13.42 15 20 H 0.07 1.61 7.16 -2.39 -0.02 1.59 15 21 H 0.10 1.89 7.56 -2.39 -0.02 1.88 15 22 H 0.10 1.68 8.14 -2.39 -0.02 1.66 15 23 H 0.39 14.65 5.18 -92.71 -0.48 14.17 15 24 H 0.28 15.21 8.31 -92.71 -0.77 14.44 15 25 H 0.19 4.54 7.26 -2.91 -0.02 4.52 15 26 H 0.17 3.48 8.06 -2.91 -0.02 3.45 15 27 H 0.21 4.43 8.06 -2.91 -0.02 4.41 15 Total: -1.00 -80.89 242.95 4.45 -76.45 By element: Atomic # 1 Polarization: 28.38 SS G_CDS: 0.65 Total: 29.03 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: 4.89 Total: 1.64 kcal Atomic # 7 Polarization: -107.01 SS G_CDS: -2.94 Total: -109.96 kcal Atomic # 8 Polarization: -35.98 SS G_CDS: -0.05 Total: -36.03 kcal Atomic # 14 Polarization: 36.97 SS G_CDS: 1.90 Total: 38.87 kcal Total: -80.89 4.45 -76.45 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226231350.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.827 kcal (2) G-P(sol) polarization free energy of solvation -80.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds