Wall clock time and date at job start Sun Mar 29 2020 21:31:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.46652 * 2 1 4 4 C 1.50696 * 109.47079 * 240.00516 * 2 1 3 5 5 O 1.21296 * 119.99680 * 239.99477 * 4 2 1 6 6 N 1.34779 * 120.00473 * 59.99497 * 4 2 1 7 7 C 1.37095 * 120.00007 * 179.97438 * 6 4 2 8 8 H 1.08000 * 120.00240 * 0.02562 * 7 6 4 9 9 C 1.38951 * 119.99986 * 180.02562 * 7 6 4 10 10 N 1.31413 * 119.99715 * 359.97438 * 9 7 6 11 11 Si 1.86790 * 120.00151 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47451 * 90.00186 * 11 9 7 13 13 H 1.48504 * 109.47449 * 209.99797 * 11 9 7 14 14 H 1.48497 * 109.47356 * 329.99800 * 11 9 7 15 15 N 1.46494 * 109.47444 * 119.99897 * 2 1 3 16 16 C 1.34954 * 126.03475 * 35.00167 * 15 2 1 17 17 C 1.35316 * 107.74368 * 179.73518 * 16 15 2 18 18 C 1.39868 * 107.92272 * 0.02562 * 17 16 15 19 19 N 1.30837 * 108.20148 * 359.97438 * 18 17 16 20 20 H 1.08998 * 109.47215 * 60.00019 * 1 2 3 21 21 H 1.09003 * 109.47010 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.47523 * 299.99744 * 1 2 3 23 23 H 0.96997 * 119.99403 * 0.02562 * 6 4 2 24 24 H 0.97002 * 120.00201 * 179.97438 * 10 9 7 25 25 H 1.07999 * 126.12395 * 359.71501 * 16 15 2 26 26 H 1.07999 * 126.03437 * 179.97438 * 17 16 15 27 27 H 1.08001 * 125.89990 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 8 2.7298 -1.6964 -1.1192 6 7 1.7067 -0.2498 -2.4546 7 6 2.1642 -0.8958 -3.5740 8 1 2.7851 -1.7738 -3.4749 9 6 1.8289 -0.4208 -4.8360 10 7 1.0729 0.6473 -4.9565 11 14 2.4516 -1.3012 -6.3612 12 1 1.4732 -2.3425 -6.7658 13 1 2.6170 -0.3220 -7.4653 14 1 3.7595 -1.9392 -6.0652 15 7 2.0184 -0.6905 1.1961 16 6 1.4403 -1.7559 1.7894 17 6 2.1998 -2.0962 2.8564 18 6 3.2787 -1.2082 2.9175 19 7 3.1711 -0.3653 1.9227 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 1.1493 0.5390 -2.5435 24 1 0.8391 0.9792 -5.8375 25 1 0.5337 -2.2483 1.4701 26 1 2.0065 -2.9094 3.5403 27 1 4.0648 -1.2168 3.6581 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226231359.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:28 Heat of formation + Delta-G solvation = 41.116506 kcal Electronic energy + Delta-G solvation = -13433.027304 eV Core-core repulsion = 10999.861276 eV Total energy + Delta-G solvation = -2433.166029 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.090 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.79035 -38.31495 -34.24733 -33.79841 -31.34270 -29.67584 -29.02107 -25.44878 -23.89621 -20.93712 -20.59427 -19.04583 -18.15037 -16.60345 -16.32708 -14.79979 -14.56180 -14.12159 -13.81842 -13.51392 -13.17370 -12.87687 -12.40171 -12.09450 -11.89467 -11.63489 -11.31144 -11.08560 -10.46112 -10.33114 -10.27027 -9.63738 -9.18707 -8.62484 -8.10749 -8.03429 -6.53247 -3.94743 2.33469 2.88471 3.10636 3.21349 3.26247 3.27770 3.68478 4.09243 4.72212 4.89373 5.14413 5.20278 5.26586 5.38404 5.64131 5.82684 5.90942 6.00397 6.16576 6.27651 6.37912 7.05033 7.41212 7.44955 7.91233 8.14963 8.45282 9.04488 9.36409 9.86491 10.63736 Molecular weight = 209.09amu Principal moments of inertia in cm(-1) A = 0.061427 B = 0.007662 C = 0.007228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 455.718024 B = 3653.533795 C = 3872.895867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.145 3.855 3 H 0.113 0.887 4 C 0.425 3.575 5 O -0.578 6.578 6 N -0.551 5.551 7 C -0.303 4.303 8 H 0.104 0.896 9 C 0.026 3.974 10 N -0.897 5.897 11 Si 0.932 3.068 12 H -0.277 1.277 13 H -0.282 1.282 14 H -0.269 1.269 15 N -0.337 5.337 16 C 0.072 3.928 17 C -0.288 4.288 18 C 0.035 3.965 19 N -0.294 5.294 20 H 0.089 0.911 21 H 0.068 0.932 22 H 0.068 0.932 23 H 0.394 0.606 24 H 0.274 0.726 25 H 0.166 0.834 26 H 0.141 0.859 27 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.374 -0.316 9.377 9.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.039 3.961 3 H 0.131 0.869 4 C 0.209 3.791 5 O -0.462 6.462 6 N -0.187 5.187 7 C -0.432 4.432 8 H 0.122 0.878 9 C -0.176 4.176 10 N -0.538 5.538 11 Si 0.759 3.241 12 H -0.203 1.203 13 H -0.208 1.208 14 H -0.193 1.193 15 N -0.118 5.118 16 C -0.075 4.075 17 C -0.317 4.317 18 C -0.151 4.151 19 N -0.115 5.115 20 H 0.108 0.892 21 H 0.087 0.913 22 H 0.087 0.913 23 H 0.228 0.772 24 H 0.084 0.916 25 H 0.183 0.817 26 H 0.159 0.841 27 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -2.500 0.213 8.543 8.904 hybrid contribution -0.394 -0.685 -0.527 0.950 sum -2.894 -0.472 8.016 8.535 Atomic orbital electron populations 1.22135 0.91715 1.03796 1.03852 1.21115 0.95237 0.97300 0.82495 0.86917 1.19869 0.86892 0.88070 0.84266 1.90585 1.41635 1.28085 1.85894 1.41799 1.45440 1.27510 1.03939 1.19725 1.29550 1.11008 0.82905 0.87821 1.25287 0.96635 0.96368 0.99333 1.69602 1.36215 1.22621 1.25358 0.85817 0.79403 0.78739 0.80135 1.20262 1.20761 1.19323 1.48242 1.18488 1.23934 1.21090 1.22356 0.99867 0.90810 0.94509 1.21335 0.99788 1.06634 1.03987 1.23728 0.99203 0.94734 0.97421 1.77291 1.02253 1.24815 1.07132 0.89209 0.91263 0.91306 0.77241 0.91626 0.81655 0.84086 0.80583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.22 8.73 37.16 0.32 -1.89 15 2 C 0.14 2.68 3.73 -69.09 -0.26 2.43 15 3 H 0.11 1.96 8.14 -51.93 -0.42 1.53 15 4 C 0.43 10.16 7.18 -10.99 -0.08 10.09 15 5 O -0.58 -16.34 15.99 5.54 0.09 -16.25 15 6 N -0.55 -13.66 5.18 -10.96 -0.06 -13.72 15 7 C -0.30 -8.32 9.68 -14.93 -0.14 -8.47 15 8 H 0.10 3.03 7.16 -52.49 -0.38 2.65 15 9 C 0.03 0.69 5.50 -17.47 -0.10 0.59 15 10 N -0.90 -23.67 13.05 55.50 0.72 -22.95 15 11 Si 0.93 20.71 29.55 -169.99 -5.02 15.69 15 12 H -0.28 -6.05 7.11 56.52 0.40 -5.65 15 13 H -0.28 -6.12 7.11 56.52 0.40 -5.72 15 14 H -0.27 -6.02 7.11 56.52 0.40 -5.62 15 15 N -0.34 -6.43 3.02 -56.00 -0.17 -6.60 15 16 C 0.07 1.20 10.58 -17.22 -0.18 1.02 15 17 C -0.29 -4.43 10.80 -40.01 -0.43 -4.86 15 18 C 0.03 0.57 12.03 -17.37 -0.21 0.36 15 19 N -0.29 -5.79 12.58 30.62 0.39 -5.40 15 20 H 0.09 1.22 7.56 -51.93 -0.39 0.83 15 21 H 0.07 0.97 7.16 -51.93 -0.37 0.59 15 22 H 0.07 0.81 8.14 -51.93 -0.42 0.39 15 23 H 0.39 9.12 7.32 -40.82 -0.30 8.82 15 24 H 0.27 6.83 8.31 -40.82 -0.34 6.49 15 25 H 0.17 2.30 7.26 -52.49 -0.38 1.92 15 26 H 0.14 1.72 8.06 -52.49 -0.42 1.30 15 27 H 0.18 2.16 8.06 -52.49 -0.42 1.74 15 LS Contribution 246.07 15.07 3.71 3.71 Total: -1.00 -32.93 246.07 -4.06 -36.99 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -2.65 Total: 9.28 kcal Atomic # 6 Polarization: 0.34 SS G_CDS: -1.08 Total: -0.74 kcal Atomic # 7 Polarization: -49.55 SS G_CDS: 0.88 Total: -48.67 kcal Atomic # 8 Polarization: -16.34 SS G_CDS: 0.09 Total: -16.25 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -32.93 -4.06 -36.99 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226231359.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.107 kcal (2) G-P(sol) polarization free energy of solvation -32.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds