Wall clock time and date at job start Sun Mar 29 2020 21:31:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.46652 * 2 1 4 4 C 1.50696 * 109.47079 * 240.00516 * 2 1 3 5 5 O 1.21296 * 119.99680 * 239.99477 * 4 2 1 6 6 N 1.34779 * 120.00473 * 59.99497 * 4 2 1 7 7 C 1.37095 * 120.00007 * 179.97438 * 6 4 2 8 8 H 1.08000 * 120.00240 * 0.02562 * 7 6 4 9 9 C 1.38951 * 119.99986 * 180.02562 * 7 6 4 10 10 N 1.31413 * 119.99715 * 359.97438 * 9 7 6 11 11 Si 1.86790 * 120.00151 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47451 * 90.00186 * 11 9 7 13 13 H 1.48504 * 109.47449 * 209.99797 * 11 9 7 14 14 H 1.48497 * 109.47356 * 329.99800 * 11 9 7 15 15 N 1.46494 * 109.47444 * 119.99897 * 2 1 3 16 16 C 1.34954 * 126.03475 * 35.00167 * 15 2 1 17 17 C 1.35316 * 107.74368 * 179.73518 * 16 15 2 18 18 C 1.39868 * 107.92272 * 0.02562 * 17 16 15 19 19 N 1.30837 * 108.20148 * 359.97438 * 18 17 16 20 20 H 1.08998 * 109.47215 * 60.00019 * 1 2 3 21 21 H 1.09003 * 109.47010 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.47523 * 299.99744 * 1 2 3 23 23 H 0.96997 * 119.99403 * 0.02562 * 6 4 2 24 24 H 0.97002 * 120.00201 * 179.97438 * 10 9 7 25 25 H 1.07999 * 126.12395 * 359.71501 * 16 15 2 26 26 H 1.07999 * 126.03437 * 179.97438 * 17 16 15 27 27 H 1.08001 * 125.89990 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 8 2.7298 -1.6964 -1.1192 6 7 1.7067 -0.2498 -2.4546 7 6 2.1642 -0.8958 -3.5740 8 1 2.7851 -1.7738 -3.4749 9 6 1.8289 -0.4208 -4.8360 10 7 1.0729 0.6473 -4.9565 11 14 2.4516 -1.3012 -6.3612 12 1 1.4732 -2.3425 -6.7658 13 1 2.6170 -0.3220 -7.4653 14 1 3.7595 -1.9392 -6.0652 15 7 2.0184 -0.6905 1.1961 16 6 1.4403 -1.7559 1.7894 17 6 2.1998 -2.0962 2.8564 18 6 3.2787 -1.2082 2.9175 19 7 3.1711 -0.3653 1.9227 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 1.1493 0.5390 -2.5435 24 1 0.8391 0.9792 -5.8375 25 1 0.5337 -2.2483 1.4701 26 1 2.0065 -2.9094 3.5403 27 1 4.0648 -1.2168 3.6581 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226231359.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:27 Heat of formation + Delta-G solvation = 17.384410 kcal Electronic energy + Delta-G solvation = -13434.056405 eV Core-core repulsion = 10999.861276 eV Total energy + Delta-G solvation = -2434.195129 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.090 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.11973 -40.15982 -36.15808 -35.37525 -33.31864 -30.97873 -30.32381 -27.30736 -25.39263 -22.48272 -21.88077 -20.68517 -20.06215 -18.13526 -17.96246 -16.71634 -16.03731 -15.87504 -15.37934 -15.11069 -14.52391 -14.37915 -13.67166 -13.57830 -13.31997 -13.26523 -12.96894 -12.55901 -12.48119 -12.15920 -11.61199 -11.57375 -10.78895 -10.22830 -10.12246 -9.42257 -8.54394 -6.04508 1.00642 1.32896 1.40138 1.51761 1.59348 1.86308 2.04975 2.26252 3.02254 3.10148 3.66258 3.85408 4.04320 4.16601 4.19948 4.62326 4.67358 4.77490 4.91198 5.09077 5.20545 5.34024 5.80594 5.89001 6.15658 6.47781 6.86147 7.01802 7.39428 7.94208 8.61948 Molecular weight = 209.09amu Principal moments of inertia in cm(-1) A = 0.061427 B = 0.007662 C = 0.007228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 455.718024 B = 3653.533795 C = 3872.895867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.153 3.847 3 H 0.121 0.879 4 C 0.422 3.578 5 O -0.628 6.628 6 N -0.553 5.553 7 C -0.340 4.340 8 H 0.076 0.924 9 C -0.004 4.004 10 N -0.911 5.911 11 Si 0.993 3.007 12 H -0.267 1.267 13 H -0.268 1.268 14 H -0.277 1.277 15 N -0.357 5.357 16 C 0.056 3.944 17 C -0.285 4.285 18 C 0.036 3.964 19 N -0.344 5.344 20 H 0.094 0.906 21 H 0.070 0.930 22 H 0.099 0.901 23 H 0.401 0.599 24 H 0.281 0.719 25 H 0.189 0.811 26 H 0.175 0.825 27 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.186 -0.415 9.880 10.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.047 3.953 3 H 0.138 0.862 4 C 0.208 3.792 5 O -0.515 6.515 6 N -0.190 5.190 7 C -0.469 4.469 8 H 0.094 0.906 9 C -0.205 4.205 10 N -0.551 5.551 11 Si 0.817 3.183 12 H -0.192 1.192 13 H -0.192 1.192 14 H -0.202 1.202 15 N -0.138 5.138 16 C -0.090 4.090 17 C -0.314 4.314 18 C -0.149 4.149 19 N -0.165 5.165 20 H 0.113 0.887 21 H 0.089 0.911 22 H 0.118 0.882 23 H 0.236 0.764 24 H 0.091 0.909 25 H 0.206 0.794 26 H 0.193 0.807 27 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -3.343 0.141 9.057 9.655 hybrid contribution -0.112 -0.680 -0.605 0.917 sum -3.455 -0.539 8.452 9.147 Atomic orbital electron populations 1.22119 0.88211 1.04509 1.05566 1.21057 0.97746 0.96539 0.79995 0.86150 1.20870 0.85466 0.87373 0.85476 1.90539 1.43642 1.30423 1.86908 1.41805 1.45593 1.27598 1.03980 1.19638 1.31120 1.11475 0.84675 0.90599 1.26023 0.96274 0.96857 1.01352 1.69645 1.36026 1.22941 1.26482 0.84928 0.78509 0.78060 0.76851 1.19249 1.19233 1.20165 1.48348 1.18984 1.25131 1.21360 1.22968 1.00871 0.90359 0.94774 1.21814 0.98815 1.06850 1.03876 1.24439 0.99925 0.93702 0.96881 1.77233 1.03451 1.27013 1.08835 0.88728 0.91056 0.88243 0.76440 0.90893 0.79416 0.80744 0.77188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.88 8.73 71.98 0.63 -3.25 15 2 C 0.15 5.60 3.73 44.25 0.17 5.77 15 3 H 0.12 4.15 8.14 -2.39 -0.02 4.13 15 4 C 0.42 20.56 7.18 87.66 0.63 21.19 15 5 O -0.63 -36.58 15.99 -3.08 -0.05 -36.63 15 6 N -0.55 -27.97 5.18 -306.98 -1.59 -29.56 15 7 C -0.34 -19.13 9.68 84.04 0.81 -18.32 15 8 H 0.08 4.63 7.16 -2.91 -0.02 4.61 15 9 C 0.00 -0.20 5.50 84.93 0.47 0.27 15 10 N -0.91 -47.45 13.05 21.66 0.28 -47.16 15 11 Si 0.99 42.14 29.55 68.60 2.03 44.17 15 12 H -0.27 -10.91 7.11 99.48 0.71 -10.21 15 13 H -0.27 -10.69 7.11 99.48 0.71 -9.98 15 14 H -0.28 -12.02 7.11 99.48 0.71 -11.31 15 15 N -0.36 -13.36 3.02 -331.07 -1.00 -14.36 15 16 C 0.06 1.79 10.58 83.54 0.88 2.68 15 17 C -0.28 -8.06 10.80 21.99 0.24 -7.83 15 18 C 0.04 1.11 12.03 85.24 1.02 2.13 15 19 N -0.34 -13.36 12.58 -57.02 -0.72 -14.08 15 20 H 0.09 2.43 7.56 -2.39 -0.02 2.41 15 21 H 0.07 1.86 7.16 -2.39 -0.02 1.85 15 22 H 0.10 2.06 8.14 -2.39 -0.02 2.04 15 23 H 0.40 18.72 7.32 -92.71 -0.68 18.05 15 24 H 0.28 13.65 8.31 -92.71 -0.77 12.88 15 25 H 0.19 4.83 7.26 -2.91 -0.02 4.81 15 26 H 0.18 3.62 8.06 -2.91 -0.02 3.59 15 27 H 0.21 4.61 8.06 -2.91 -0.02 4.59 15 Total: -1.00 -71.82 246.07 4.31 -67.51 By element: Atomic # 1 Polarization: 26.95 SS G_CDS: 0.51 Total: 27.46 kcal Atomic # 6 Polarization: -2.20 SS G_CDS: 4.85 Total: 2.64 kcal Atomic # 7 Polarization: -102.13 SS G_CDS: -3.02 Total: -105.16 kcal Atomic # 8 Polarization: -36.58 SS G_CDS: -0.05 Total: -36.63 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.17 kcal Total: -71.82 4.31 -67.51 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226231359.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.892 kcal (2) G-P(sol) polarization free energy of solvation -71.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds