Wall clock time and date at job start Sun Mar 29 2020 21:33:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.37095 * 120.00054 * 2 1 4 4 H 1.07999 * 120.00351 * 142.84476 * 3 2 1 5 5 C 1.38956 * 119.99695 * 322.83883 * 3 2 1 6 6 N 1.31404 * 119.99700 * 158.43866 * 5 3 2 7 7 Si 1.86803 * 120.00011 * 338.43883 * 5 3 2 8 8 H 1.48502 * 109.46688 * 95.72338 * 7 5 3 9 9 H 1.48498 * 109.47103 * 215.71493 * 7 5 3 10 10 H 1.48491 * 109.47122 * 335.72207 * 7 5 3 11 11 C 1.34779 * 119.99477 * 180.26435 * 2 1 3 12 12 O 1.21295 * 119.99262 * 180.02562 * 11 2 1 13 13 C 1.50687 * 120.00481 * 0.02562 * 11 2 1 14 14 N 1.46503 * 109.47414 * 179.97438 * 13 11 2 15 15 C 1.34949 * 126.04101 * 124.99644 * 14 13 11 16 16 C 1.35312 * 107.74698 * 179.97438 * 15 14 13 17 17 C 1.39869 * 107.92053 * 359.97438 * 16 15 14 18 18 N 1.30837 * 108.20226 * 359.74548 * 17 16 15 19 19 H 1.08991 * 109.47611 * 264.85855 * 1 2 3 20 20 H 1.09000 * 109.46733 * 24.86257 * 1 2 3 21 21 H 1.09003 * 109.46706 * 144.85628 * 1 2 3 22 22 H 0.97001 * 120.00021 * 179.97438 * 6 5 3 23 23 H 1.09003 * 109.47370 * 299.99537 * 13 11 2 24 24 H 1.09001 * 109.47640 * 59.99631 * 13 11 2 25 25 H 1.07998 * 126.12245 * 359.95750 * 15 14 13 26 26 H 1.07998 * 126.03899 * 180.02562 * 16 15 14 27 27 H 1.08004 * 125.89964 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.0661 1.2823 0.5649 5 6 1.6673 2.2684 -0.7269 6 7 2.0436 3.4889 -0.4177 7 14 0.4829 1.9869 -2.1437 8 1 -0.9121 2.1592 -1.6644 9 1 0.7600 2.9684 -3.2231 10 1 0.6589 0.6095 -2.6698 11 6 2.1388 -1.1673 -0.0054 12 8 3.3518 -1.1672 -0.0049 13 6 1.3854 -2.4722 -0.0120 14 7 2.3373 -3.5858 -0.0176 15 6 2.3775 -4.6005 0.8711 16 6 3.3972 -5.4173 0.5187 17 6 4.0004 -4.8839 -0.6249 18 7 3.3622 -3.7891 -0.9507 19 1 -0.3634 -0.0921 1.0234 20 1 -0.3633 0.9324 -0.4321 21 1 -0.3633 -0.8404 -0.5916 22 1 1.7066 4.2436 -0.9254 23 1 0.7584 -2.5344 0.8775 24 1 0.7590 -2.5257 -0.9024 25 1 1.7148 -4.7361 1.7130 26 1 3.6924 -6.3218 1.0297 27 1 4.8446 -5.3051 -1.1506 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227422391.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:04 Heat of formation + Delta-G solvation = 42.509344 kcal Electronic energy + Delta-G solvation = -13550.492675 eV Core-core repulsion = 11117.387044 eV Total energy + Delta-G solvation = -2433.105631 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.090 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.00328 -40.36690 -36.79176 -34.43216 -33.86326 -30.92715 -29.12120 -28.01065 -26.25076 -22.37023 -21.87641 -20.59304 -19.11754 -18.25346 -17.76616 -17.43438 -16.48699 -15.75683 -15.31225 -14.80234 -14.73853 -14.38689 -14.12705 -13.97649 -13.54736 -13.45494 -13.09502 -12.66407 -12.28170 -11.86471 -11.43502 -11.12288 -10.74502 -10.16310 -9.75606 -9.42053 -8.55511 -6.19440 1.08293 1.17296 1.31920 1.44343 1.66027 1.84114 2.07708 2.14883 2.66297 2.88501 3.71240 3.87368 4.08519 4.14177 4.28885 4.33522 4.60759 4.80216 4.82164 4.96186 5.21409 5.46991 5.81481 5.96970 6.19766 6.52376 6.88869 6.90896 7.21596 7.78817 8.62148 Molecular weight = 209.09amu Principal moments of inertia in cm(-1) A = 0.059802 B = 0.008563 C = 0.008350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.096612 B = 3269.126620 C = 3352.450845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 N -0.481 5.481 3 C -0.338 4.338 4 H 0.038 0.962 5 C 0.010 3.990 6 N -0.912 5.912 7 Si 0.958 3.042 8 H -0.230 1.230 9 H -0.293 1.293 10 H -0.261 1.261 11 C 0.439 3.561 12 O -0.601 6.601 13 C 0.125 3.875 14 N -0.371 5.371 15 C 0.051 3.949 16 C -0.283 4.283 17 C 0.021 3.979 18 N -0.333 5.333 19 H 0.087 0.913 20 H 0.056 0.944 21 H 0.101 0.899 22 H 0.281 0.719 23 H 0.165 0.835 24 H 0.127 0.873 25 H 0.217 0.783 26 H 0.176 0.824 27 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.276 -15.592 1.241 18.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 N -0.204 5.204 3 C -0.466 4.466 4 H 0.056 0.944 5 C -0.192 4.192 6 N -0.549 5.549 7 Si 0.781 3.219 8 H -0.154 1.154 9 H -0.220 1.220 10 H -0.185 1.185 11 C 0.228 3.772 12 O -0.484 6.484 13 C 0.000 4.000 14 N -0.154 5.154 15 C -0.094 4.094 16 C -0.313 4.313 17 C -0.165 4.165 18 N -0.154 5.154 19 H 0.106 0.894 20 H 0.075 0.925 21 H 0.119 0.881 22 H 0.091 0.909 23 H 0.182 0.818 24 H 0.145 0.855 25 H 0.233 0.767 26 H 0.194 0.806 27 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -8.876 -14.279 0.418 16.818 hybrid contribution 0.372 0.113 0.024 0.390 sum -8.504 -14.166 0.442 16.528 Atomic orbital electron populations 1.22380 0.79355 1.03235 1.04155 1.43806 1.06383 1.04083 1.66139 1.18610 1.09478 0.87953 1.30601 0.94426 1.26232 1.00018 0.93741 0.99208 1.69866 1.46006 0.99343 1.39689 0.85716 0.79499 0.78701 0.77984 1.15442 1.22019 1.18499 1.21344 0.88397 0.86438 0.81060 1.90609 1.16512 1.87479 1.53778 1.21730 0.89031 0.80972 1.08230 1.48351 1.25488 1.19606 1.21967 1.23339 1.01245 0.88506 0.96288 1.21868 1.01349 1.06098 1.01946 1.24437 1.00675 0.92995 0.98379 1.77465 1.02516 1.19462 1.15977 0.89445 0.92528 0.88054 0.90907 0.81760 0.85501 0.76682 0.80643 0.78377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.65 8.77 127.77 1.12 2.77 15 2 N -0.48 -22.80 2.59 -658.90 -1.70 -24.51 15 3 C -0.34 -20.19 9.37 84.04 0.79 -19.40 15 4 H 0.04 2.67 7.91 -2.91 -0.02 2.65 15 5 C 0.01 0.57 5.29 84.93 0.45 1.02 15 6 N -0.91 -54.78 13.96 21.66 0.30 -54.48 15 7 Si 0.96 41.54 24.96 68.60 1.71 43.26 15 8 H -0.23 -8.33 6.69 99.48 0.67 -7.67 15 9 H -0.29 -12.91 7.11 99.48 0.71 -12.21 15 10 H -0.26 -11.07 7.11 99.48 0.71 -10.36 15 11 C 0.44 20.52 7.66 87.65 0.67 21.19 15 12 O -0.60 -35.63 15.59 -3.08 -0.05 -35.68 15 13 C 0.12 3.83 5.61 85.63 0.48 4.31 15 14 N -0.37 -12.60 3.39 -351.81 -1.19 -13.79 15 15 C 0.05 1.28 11.45 83.54 0.96 2.24 15 16 C -0.28 -7.12 10.80 21.99 0.24 -6.88 15 17 C 0.02 0.67 12.03 85.24 1.02 1.69 15 18 N -0.33 -13.41 11.66 -57.02 -0.66 -14.08 15 19 H 0.09 2.32 8.14 -2.39 -0.02 2.30 15 20 H 0.06 2.02 3.43 -2.39 -0.01 2.01 15 21 H 0.10 2.36 6.64 -2.39 -0.02 2.35 15 22 H 0.28 15.39 8.31 -92.71 -0.77 14.62 15 23 H 0.17 3.20 8.04 -2.39 -0.02 3.18 15 24 H 0.13 3.23 7.41 -2.39 -0.02 3.22 15 25 H 0.22 3.06 8.06 -2.91 -0.02 3.04 15 26 H 0.18 3.06 8.06 -2.91 -0.02 3.04 15 27 H 0.20 4.83 8.06 -2.91 -0.02 4.81 15 Total: -1.00 -86.63 238.08 5.27 -81.36 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: 1.14 Total: 10.97 kcal Atomic # 6 Polarization: 1.22 SS G_CDS: 5.73 Total: 6.95 kcal Atomic # 7 Polarization: -103.60 SS G_CDS: -3.26 Total: -106.86 kcal Atomic # 8 Polarization: -35.63 SS G_CDS: -0.05 Total: -35.68 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 1.71 Total: 43.26 kcal Total: -86.63 5.27 -81.36 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227422391.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.869 kcal (2) G-P(sol) polarization free energy of solvation -86.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds