Wall clock time and date at job start Sun Mar 29 2020 22:00:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36930 * 120.00382 * 2 1 4 4 H 1.07995 * 120.00663 * 203.04839 * 3 2 1 5 5 C 1.38820 * 119.99704 * 23.04673 * 3 2 1 6 6 N 1.31620 * 120.00086 * 12.93929 * 5 3 2 7 7 Si 1.86796 * 119.99845 * 192.93956 * 5 3 2 8 8 H 1.48498 * 109.47423 * 359.97438 * 7 5 3 9 9 H 1.48503 * 109.47429 * 119.99879 * 7 5 3 10 10 H 1.48500 * 109.47065 * 239.99803 * 7 5 3 11 11 C 1.46499 * 119.99689 * 179.97438 * 2 1 3 12 12 C 1.53001 * 109.47009 * 89.99932 * 11 2 1 13 13 C 1.50701 * 109.47381 * 179.97438 * 12 11 2 14 14 C 1.35316 * 126.12541 * 85.02503 * 13 12 11 15 15 C 1.39874 * 107.92027 * 180.24383 * 14 13 12 16 16 N 1.30835 * 108.19783 * 359.55581 * 15 14 13 17 17 N 1.34950 * 126.12722 * 265.00529 * 13 12 11 18 18 C 1.46499 * 126.03869 * 359.97438 * 17 13 12 19 19 H 1.09005 * 109.47057 * 275.12240 * 1 2 3 20 20 H 1.08996 * 109.47028 * 35.12122 * 1 2 3 21 21 H 1.08996 * 109.47292 * 155.12266 * 1 2 3 22 22 H 0.96998 * 119.99863 * 180.02562 * 6 5 3 23 23 H 1.08998 * 109.47486 * 330.00392 * 11 2 1 24 24 H 1.08999 * 109.47177 * 209.99558 * 11 2 1 25 25 H 1.09000 * 109.47135 * 59.99892 * 12 11 2 26 26 H 1.08996 * 109.47549 * 299.99971 * 12 11 2 27 27 H 1.08001 * 126.03707 * 359.97438 * 14 13 12 28 28 H 1.07998 * 125.89716 * 179.73251 * 15 14 13 29 29 H 1.08993 * 109.46898 * 90.00318 * 18 17 13 30 30 H 1.08997 * 109.46852 * 210.00271 * 18 17 13 31 31 H 1.09003 * 109.46855 * 330.00078 * 18 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1498 1.1858 0.0000 4 1 3.1651 1.2232 -0.3661 5 6 1.5388 2.3400 0.4707 6 7 0.4120 2.2597 1.1461 7 14 2.3159 4.0073 0.1454 8 1 3.5699 3.8263 -0.6291 9 1 1.3716 4.8507 -0.6307 10 1 2.6242 4.6703 1.4379 11 6 2.1975 -1.2688 0.0006 12 6 2.4524 -1.7111 -1.4418 13 6 3.2064 -3.0159 -1.4413 14 6 2.6628 -4.2514 -1.3458 15 6 3.7049 -5.1838 -1.3778 16 7 4.8329 -4.5319 -1.4981 17 7 4.5447 -3.1616 -1.5363 18 6 5.5230 -2.0781 -1.6590 19 1 -0.3633 0.0918 1.0236 20 1 -0.3633 0.8405 -0.5912 21 1 -0.3634 -0.9323 -0.4323 22 1 -0.0151 3.0662 1.4746 23 1 1.6084 -2.0282 0.5147 24 1 3.1499 -1.1382 0.5143 25 1 3.0415 -0.9517 -1.9559 26 1 1.5001 -1.8416 -1.9556 27 1 1.6105 -4.4773 -1.2560 28 1 3.5968 -6.2566 -1.3169 29 1 5.8434 -1.7638 -0.6657 30 1 6.3858 -2.4299 -2.2246 31 1 5.0678 -1.2345 -2.1779 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230760932.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:30 Heat of formation + Delta-G solvation = 95.794672 kcal Electronic energy + Delta-G solvation = -13610.149953 eV Core-core repulsion = 11315.188042 eV Total energy + Delta-G solvation = -2294.961911 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.91311 -35.93153 -33.22527 -32.40206 -30.59325 -27.68899 -26.48178 -25.86210 -23.73408 -20.90077 -20.60417 -19.26850 -16.71940 -16.37026 -15.25269 -14.84283 -14.28208 -13.93177 -13.48962 -13.22191 -12.87170 -12.62243 -12.37201 -12.15944 -11.63979 -11.29885 -10.92629 -10.86834 -10.52422 -10.44786 -10.19502 -9.90430 -9.84931 -9.01757 -8.59080 -8.21436 -6.77446 -5.75563 -3.23292 2.17278 2.79687 3.11313 3.34688 3.41508 3.43429 4.45684 4.79778 5.00678 5.32288 5.35142 5.39876 5.51925 5.60913 5.74386 5.95993 6.06637 6.09952 6.28762 6.33984 6.73073 6.74236 6.85250 6.92603 7.30988 7.35885 7.71129 7.77267 7.98500 8.36291 9.20132 9.83359 10.32639 11.29005 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.047448 B = 0.007623 C = 0.006740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.975794 B = 3671.998296 C = 4153.247872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.601 5.601 3 C -0.258 4.258 4 H 0.068 0.932 5 C 0.003 3.997 6 N -0.906 5.906 7 Si 0.904 3.096 8 H -0.278 1.278 9 H -0.289 1.289 10 H -0.290 1.290 11 C 0.162 3.838 12 C -0.084 4.084 13 C 0.110 3.890 14 C -0.287 4.287 15 C 0.044 3.956 16 N -0.315 5.315 17 N -0.374 5.374 18 C 0.101 3.899 19 H 0.032 0.968 20 H 0.041 0.959 21 H 0.000 1.000 22 H 0.252 0.748 23 H 0.042 0.958 24 H 0.044 0.956 25 H 0.072 0.928 26 H 0.082 0.918 27 H 0.143 0.857 28 H 0.178 0.822 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.784 -8.888 -5.183 11.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.324 5.324 3 C -0.388 4.388 4 H 0.085 0.915 5 C -0.196 4.196 6 N -0.551 5.551 7 Si 0.734 3.266 8 H -0.203 1.203 9 H -0.215 1.215 10 H -0.217 1.217 11 C 0.033 3.967 12 C -0.126 4.126 13 C -0.019 4.019 14 C -0.316 4.316 15 C -0.142 4.142 16 N -0.137 5.137 17 N -0.157 5.157 18 C -0.041 4.041 19 H 0.050 0.950 20 H 0.059 0.941 21 H 0.018 0.982 22 H 0.063 0.937 23 H 0.060 0.940 24 H 0.063 0.937 25 H 0.090 0.910 26 H 0.100 0.900 27 H 0.161 0.839 28 H 0.195 0.805 29 H 0.093 0.907 30 H 0.102 0.898 31 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 6.048 -8.714 -5.204 11.816 hybrid contribution -0.526 1.019 -0.070 1.149 sum 5.523 -7.695 -5.274 10.841 Atomic orbital electron populations 1.20818 0.82484 0.95501 0.99593 1.43931 1.01961 1.00560 1.85909 1.19200 0.98267 0.85624 1.35705 0.91458 1.25040 0.97864 0.98578 0.98104 1.70081 1.19396 1.27150 1.38428 0.86200 0.78542 0.84331 0.77535 1.20344 1.21550 1.21685 1.20606 0.96301 0.88585 0.91179 1.21209 0.98739 0.89485 1.03170 1.21468 0.84025 0.98075 0.98310 1.21204 1.00397 0.90995 1.19046 1.23726 0.90271 1.00031 1.00154 1.77250 1.23726 0.86668 1.26018 1.48474 1.05150 1.05173 1.56860 1.21826 0.91689 0.87236 1.03344 0.94988 0.94059 0.98169 0.93728 0.93988 0.93710 0.90984 0.89982 0.83880 0.80517 0.90691 0.89830 0.89246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.91 8.98 59.85 0.54 4.45 16 2 N -0.60 -14.92 2.92 -181.12 -0.53 -15.45 16 3 C -0.26 -6.96 9.65 -15.06 -0.15 -7.11 16 4 H 0.07 1.75 7.86 -52.49 -0.41 1.34 16 5 C 0.00 0.07 5.10 -17.43 -0.09 -0.02 16 6 N -0.91 -26.29 10.71 55.49 0.59 -25.69 16 7 Si 0.90 21.48 29.57 -169.99 -5.03 16.45 16 8 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 9 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 10 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 11 C 0.16 3.31 5.63 -4.04 -0.02 3.29 16 12 C -0.08 -1.45 5.82 -27.88 -0.16 -1.62 16 13 C 0.11 1.80 6.19 -82.26 -0.51 1.29 16 14 C -0.29 -4.38 10.72 -40.01 -0.43 -4.81 16 15 C 0.04 0.63 12.03 -17.36 -0.21 0.42 16 16 N -0.32 -5.19 12.57 30.62 0.39 -4.80 16 17 N -0.37 -6.00 4.01 -63.89 -0.26 -6.26 16 18 C 0.10 1.27 11.27 59.85 0.67 1.95 16 19 H 0.03 0.85 7.34 -51.93 -0.38 0.46 16 20 H 0.04 1.07 7.34 -51.93 -0.38 0.69 16 21 H 0.00 -0.01 8.03 -51.93 -0.42 -0.42 16 22 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 23 H 0.04 0.83 8.07 -51.93 -0.42 0.41 16 24 H 0.04 0.94 8.04 -51.93 -0.42 0.52 16 25 H 0.07 1.26 6.95 -51.93 -0.36 0.90 16 26 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 27 H 0.14 1.93 8.06 -52.49 -0.42 1.51 16 28 H 0.18 1.88 8.06 -52.49 -0.42 1.46 16 29 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.09 1.06 6.97 -51.93 -0.36 0.70 16 LS Contribution 265.95 15.07 4.01 4.01 Total: -1.00 -31.11 265.95 -5.58 -36.69 By element: Atomic # 1 Polarization: 1.60 SS G_CDS: -4.40 Total: -2.80 kcal Atomic # 6 Polarization: -1.80 SS G_CDS: -0.35 Total: -2.15 kcal Atomic # 7 Polarization: -52.39 SS G_CDS: 0.19 Total: -52.20 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.03 Total: 16.45 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -31.11 -5.58 -36.69 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230760932.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.484 kcal (2) G-P(sol) polarization free energy of solvation -31.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds