Wall clock time and date at job start Sun Mar 29 2020 22:00:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36930 * 120.00382 * 2 1 4 4 H 1.07995 * 120.00663 * 203.04839 * 3 2 1 5 5 C 1.38820 * 119.99704 * 23.04673 * 3 2 1 6 6 N 1.31620 * 120.00086 * 12.93929 * 5 3 2 7 7 Si 1.86796 * 119.99845 * 192.93956 * 5 3 2 8 8 H 1.48498 * 109.47423 * 359.97438 * 7 5 3 9 9 H 1.48503 * 109.47429 * 119.99879 * 7 5 3 10 10 H 1.48500 * 109.47065 * 239.99803 * 7 5 3 11 11 C 1.46499 * 119.99689 * 179.97438 * 2 1 3 12 12 C 1.53001 * 109.47009 * 89.99932 * 11 2 1 13 13 C 1.50701 * 109.47381 * 179.97438 * 12 11 2 14 14 C 1.35316 * 126.12541 * 85.02503 * 13 12 11 15 15 C 1.39874 * 107.92027 * 180.24383 * 14 13 12 16 16 N 1.30835 * 108.19783 * 359.55581 * 15 14 13 17 17 N 1.34950 * 126.12722 * 265.00529 * 13 12 11 18 18 C 1.46499 * 126.03869 * 359.97438 * 17 13 12 19 19 H 1.09005 * 109.47057 * 275.12240 * 1 2 3 20 20 H 1.08996 * 109.47028 * 35.12122 * 1 2 3 21 21 H 1.08996 * 109.47292 * 155.12266 * 1 2 3 22 22 H 0.96998 * 119.99863 * 180.02562 * 6 5 3 23 23 H 1.08998 * 109.47486 * 330.00392 * 11 2 1 24 24 H 1.08999 * 109.47177 * 209.99558 * 11 2 1 25 25 H 1.09000 * 109.47135 * 59.99892 * 12 11 2 26 26 H 1.08996 * 109.47549 * 299.99971 * 12 11 2 27 27 H 1.08001 * 126.03707 * 359.97438 * 14 13 12 28 28 H 1.07998 * 125.89716 * 179.73251 * 15 14 13 29 29 H 1.08993 * 109.46898 * 90.00318 * 18 17 13 30 30 H 1.08997 * 109.46852 * 210.00271 * 18 17 13 31 31 H 1.09003 * 109.46855 * 330.00078 * 18 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1498 1.1858 0.0000 4 1 3.1651 1.2232 -0.3661 5 6 1.5388 2.3400 0.4707 6 7 0.4120 2.2597 1.1461 7 14 2.3159 4.0073 0.1454 8 1 3.5699 3.8263 -0.6291 9 1 1.3716 4.8507 -0.6307 10 1 2.6242 4.6703 1.4379 11 6 2.1975 -1.2688 0.0006 12 6 2.4524 -1.7111 -1.4418 13 6 3.2064 -3.0159 -1.4413 14 6 2.6628 -4.2514 -1.3458 15 6 3.7049 -5.1838 -1.3778 16 7 4.8329 -4.5319 -1.4981 17 7 4.5447 -3.1616 -1.5363 18 6 5.5230 -2.0781 -1.6590 19 1 -0.3633 0.0918 1.0236 20 1 -0.3633 0.8405 -0.5912 21 1 -0.3634 -0.9323 -0.4323 22 1 -0.0151 3.0662 1.4746 23 1 1.6084 -2.0282 0.5147 24 1 3.1499 -1.1382 0.5143 25 1 3.0415 -0.9517 -1.9559 26 1 1.5001 -1.8416 -1.9556 27 1 1.6105 -4.4773 -1.2560 28 1 3.5968 -6.2566 -1.3169 29 1 5.8434 -1.7638 -0.6657 30 1 6.3858 -2.4299 -2.2246 31 1 5.0678 -1.2345 -2.1779 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230760932.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:30 Heat of formation + Delta-G solvation = 76.661108 kcal Electronic energy + Delta-G solvation = -13610.979647 eV Core-core repulsion = 11315.188042 eV Total energy + Delta-G solvation = -2295.791604 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.09159 -37.76178 -34.62655 -33.83170 -32.32972 -29.17879 -27.88597 -27.54288 -25.42845 -22.49244 -21.96118 -20.50134 -18.72222 -17.62327 -16.86628 -16.31446 -15.71076 -15.48275 -14.93366 -14.78229 -14.50209 -14.08649 -13.59742 -13.22789 -13.13418 -13.02083 -12.77496 -12.72274 -12.34225 -12.09201 -11.92166 -11.67504 -11.45959 -10.68281 -10.18606 -9.43051 -8.76882 -7.82369 -5.32729 0.96204 1.47181 1.48485 1.58431 1.70159 1.96622 2.51193 3.31456 3.53723 3.77142 4.04540 4.15238 4.35697 4.40739 4.56609 4.64152 4.70139 4.78368 4.86052 4.91010 5.01029 5.21847 5.38696 5.42402 5.63770 5.72957 5.83324 6.13939 6.32974 6.82067 7.15058 7.85949 8.30388 9.20847 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.047448 B = 0.007623 C = 0.006740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.975794 B = 3671.998296 C = 4153.247872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.173 3.827 2 N -0.618 5.618 3 C -0.263 4.263 4 H 0.075 0.925 5 C -0.054 4.054 6 N -0.940 5.940 7 Si 0.968 3.032 8 H -0.263 1.263 9 H -0.291 1.291 10 H -0.294 1.294 11 C 0.165 3.835 12 C -0.063 4.063 13 C 0.091 3.909 14 C -0.289 4.289 15 C 0.046 3.954 16 N -0.338 5.338 17 N -0.383 5.383 18 C 0.093 3.907 19 H 0.004 0.996 20 H 0.016 0.984 21 H 0.036 0.964 22 H 0.248 0.752 23 H 0.048 0.952 24 H 0.035 0.965 25 H 0.068 0.932 26 H 0.086 0.914 27 H 0.160 0.840 28 H 0.213 0.787 29 H 0.077 0.923 30 H 0.101 0.899 31 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.615 -9.804 -6.033 12.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.341 5.341 3 C -0.393 4.393 4 H 0.092 0.908 5 C -0.249 4.249 6 N -0.587 5.587 7 Si 0.796 3.204 8 H -0.187 1.187 9 H -0.218 1.218 10 H -0.221 1.221 11 C 0.038 3.962 12 C -0.105 4.105 13 C -0.037 4.037 14 C -0.318 4.318 15 C -0.139 4.139 16 N -0.160 5.160 17 N -0.165 5.165 18 C -0.047 4.047 19 H 0.022 0.978 20 H 0.035 0.965 21 H 0.054 0.946 22 H 0.057 0.943 23 H 0.067 0.933 24 H 0.054 0.946 25 H 0.087 0.913 26 H 0.105 0.895 27 H 0.177 0.823 28 H 0.230 0.770 29 H 0.095 0.905 30 H 0.119 0.881 31 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 6.914 -9.659 -6.073 13.341 hybrid contribution -0.758 1.185 0.200 1.421 sum 6.156 -8.474 -5.874 12.008 Atomic orbital electron populations 1.20581 0.82612 0.96229 0.97720 1.44171 1.02244 1.01534 1.86180 1.19577 0.98592 0.86604 1.34545 0.90771 1.25825 0.98632 1.01995 0.98488 1.70246 1.20920 1.27588 1.39956 0.85190 0.78136 0.79974 0.77068 1.18701 1.21834 1.22128 1.20672 0.95367 0.86965 0.93217 1.20804 0.99143 0.90023 1.00503 1.21381 0.84554 0.97942 0.99872 1.21539 1.01526 0.90733 1.18028 1.24330 0.89302 1.01652 0.98630 1.77227 1.24898 0.87040 1.26839 1.48743 1.05405 1.05624 1.56768 1.22032 0.91922 0.86875 1.03889 0.97791 0.96472 0.94599 0.94273 0.93317 0.94635 0.91342 0.89522 0.82253 0.77027 0.90495 0.88084 0.88701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.44 8.98 127.77 1.15 9.59 16 2 N -0.62 -30.36 2.92 -726.93 -2.12 -32.49 16 3 C -0.26 -14.07 9.65 84.04 0.81 -13.26 16 4 H 0.07 3.78 7.86 -2.91 -0.02 3.76 16 5 C -0.05 -3.01 5.10 84.86 0.43 -2.58 16 6 N -0.94 -55.45 10.71 21.65 0.23 -55.22 16 7 Si 0.97 44.18 29.57 68.60 2.03 46.20 16 8 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 9 H -0.29 -13.32 7.11 99.48 0.71 -12.62 16 10 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 11 C 0.16 6.54 5.63 86.38 0.49 7.02 16 12 C -0.06 -2.08 5.82 29.85 0.17 -1.90 16 13 C 0.09 2.81 6.19 41.41 0.26 3.07 16 14 C -0.29 -8.06 10.72 21.99 0.24 -7.82 16 15 C 0.05 1.19 12.03 85.24 1.03 2.22 16 16 N -0.34 -10.41 12.57 -57.02 -0.72 -11.13 16 17 N -0.38 -11.58 4.01 -356.04 -1.43 -13.01 16 18 C 0.09 2.22 11.27 127.77 1.44 3.66 16 19 H 0.00 0.20 7.34 -2.38 -0.02 0.19 16 20 H 0.02 0.88 7.34 -2.39 -0.02 0.86 16 21 H 0.04 1.45 8.03 -2.39 -0.02 1.43 16 22 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 23 H 0.05 1.85 8.07 -2.39 -0.02 1.84 16 24 H 0.04 1.46 8.04 -2.39 -0.02 1.44 16 25 H 0.07 2.30 6.95 -2.39 -0.02 2.28 16 26 H 0.09 2.78 8.14 -2.39 -0.02 2.76 16 27 H 0.16 3.81 8.06 -2.91 -0.02 3.78 16 28 H 0.21 3.72 8.06 -2.91 -0.02 3.70 16 29 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.09 2.11 6.97 -2.39 -0.02 2.10 16 Total: -1.00 -65.38 265.95 5.09 -60.28 By element: Atomic # 1 Polarization: 4.26 SS G_CDS: 1.10 Total: 5.36 kcal Atomic # 6 Polarization: -6.01 SS G_CDS: 6.01 Total: 0.00 kcal Atomic # 7 Polarization: -107.80 SS G_CDS: -4.04 Total: -111.84 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.20 kcal Total: -65.38 5.09 -60.28 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230760932.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.942 kcal (2) G-P(sol) polarization free energy of solvation -65.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds