Wall clock time and date at job start Sun Mar 29 2020 22:00:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.40084 * 126.03058 * 2 1 4 4 C 1.30842 * 108.20250 * 179.73948 * 3 2 1 5 5 C 1.39868 * 108.20327 * 0.44521 * 4 3 2 6 6 C 1.34941 * 126.04014 * 180.02562 * 2 1 3 7 7 C 1.50696 * 126.13067 * 359.97438 * 6 2 1 8 8 C 1.53005 * 109.47260 * 265.00771 * 7 6 2 9 9 N 1.46897 * 109.47224 * 179.97438 * 8 7 6 10 10 C 1.46898 * 110.99983 * 179.97438 * 9 8 7 11 11 C 1.50704 * 109.46963 * 179.97438 * 10 9 8 12 12 H 1.07991 * 120.00042 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99738 * 179.97438 * 11 10 9 14 14 N 1.31513 * 119.99728 * 180.02562 * 13 11 10 15 15 Si 1.86801 * 119.99869 * 0.02562 * 13 11 10 16 16 H 1.48503 * 109.47362 * 89.99884 * 15 13 11 17 17 H 1.48504 * 109.46773 * 209.99515 * 15 13 11 18 18 H 1.48497 * 109.47393 * 329.99130 * 15 13 11 19 19 H 1.08994 * 109.47427 * 269.96961 * 1 2 3 20 20 H 1.08999 * 109.47247 * 29.97548 * 1 2 3 21 21 H 1.09007 * 109.46720 * 149.97509 * 1 2 3 22 22 H 1.08007 * 125.90122 * 180.26287 * 4 3 2 23 23 H 1.08002 * 126.04477 * 179.82088 * 5 4 3 24 24 H 1.09002 * 109.46733 * 25.00405 * 7 6 2 25 25 H 1.08998 * 109.47609 * 145.00695 * 7 6 2 26 26 H 1.09002 * 109.46948 * 299.99502 * 8 7 6 27 27 H 1.08995 * 109.47549 * 59.99195 * 8 7 6 28 28 H 1.00894 * 111.00031 * 303.95049 * 9 8 7 29 29 H 1.09001 * 109.47373 * 299.99945 * 10 9 8 30 30 H 1.09002 * 109.47013 * 60.00456 * 10 9 8 31 31 H 0.97002 * 119.99826 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2890 1.1329 0.0000 4 6 3.5346 0.7323 0.0057 5 6 3.5438 -0.6663 -0.0009 6 6 2.2589 -1.0911 -0.0005 7 6 1.7975 -2.5257 -0.0006 8 6 1.7614 -3.0500 1.4364 9 7 1.3110 -4.4482 1.4363 10 6 1.2645 -4.9863 2.8024 11 6 0.7986 -6.4190 2.7623 12 1 0.5613 -6.8834 1.8167 13 6 0.6765 -7.1372 3.9330 14 7 0.2704 -8.3876 3.8980 15 14 1.0876 -6.3340 5.5686 16 1 -0.1308 -5.6936 6.1259 17 1 1.5820 -7.3653 6.5160 18 1 2.1386 -5.3050 5.3645 19 1 -0.3634 -0.0005 1.0276 20 1 -0.3634 0.8902 -0.5134 21 1 -0.3633 -0.8898 -0.5143 22 1 4.4053 1.3713 0.0112 23 1 4.4212 -1.2961 -0.0013 24 1 0.7995 -2.5863 -0.4346 25 1 2.4874 -3.1293 -0.5903 26 1 2.7594 -2.9894 1.8704 27 1 1.0715 -2.4464 2.0262 28 1 0.4154 -4.5396 0.9807 29 1 2.2593 -4.9396 3.2454 30 1 0.5716 -4.3961 3.4020 31 1 0.1841 -8.8927 4.7216 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230778572.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:32 Heat of formation + Delta-G solvation = 72.325518 kcal Electronic energy + Delta-G solvation = -13123.876554 eV Core-core repulsion = 10827.896944 eV Total energy + Delta-G solvation = -2295.979610 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.20685 -36.09301 -33.47929 -32.81846 -31.65437 -28.63323 -26.77609 -26.16855 -22.41969 -21.19914 -21.08546 -19.59843 -16.84561 -16.67571 -15.59162 -15.18422 -14.55786 -14.48019 -13.80685 -13.62515 -13.16857 -12.87726 -12.56690 -12.48698 -12.29795 -12.00687 -11.50468 -11.01774 -10.76264 -10.55159 -10.45812 -9.85339 -9.36386 -9.22124 -8.63747 -8.48420 -7.59365 -6.09615 -4.08029 1.86916 2.50824 2.85325 3.25749 3.33847 3.36691 4.38813 4.51546 4.52921 4.98648 5.05191 5.13390 5.22171 5.25118 5.31371 5.47976 5.66879 5.75437 5.78687 5.99544 6.22390 6.31577 6.66317 6.72113 6.94237 7.01952 7.54873 7.70816 7.80776 8.24228 8.59412 8.97967 9.52114 11.03603 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.053742 B = 0.005675 C = 0.005585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.885830 B = 4932.672468 C = 5012.394774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.374 5.374 3 N -0.308 5.308 4 C 0.045 3.955 5 C -0.275 4.275 6 C 0.098 3.902 7 C -0.057 4.057 8 C 0.065 3.935 9 N -0.679 5.679 10 C 0.164 3.836 11 C -0.518 4.518 12 H 0.080 0.920 13 C 0.069 3.931 14 N -0.899 5.899 15 Si 0.877 3.123 16 H -0.278 1.278 17 H -0.285 1.285 18 H -0.267 1.267 19 H 0.074 0.926 20 H 0.087 0.913 21 H 0.088 0.912 22 H 0.181 0.819 23 H 0.148 0.852 24 H 0.072 0.928 25 H 0.100 0.900 26 H 0.071 0.929 27 H 0.017 0.983 28 H 0.335 0.665 29 H 0.028 0.972 30 H -0.021 1.021 31 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.455 15.849 -7.113 17.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.157 5.157 3 N -0.129 5.129 4 C -0.141 4.141 5 C -0.305 4.305 6 C -0.031 4.031 7 C -0.097 4.097 8 C -0.066 4.066 9 N -0.310 5.310 10 C 0.037 3.963 11 C -0.556 4.556 12 H 0.098 0.902 13 C -0.133 4.133 14 N -0.538 5.538 15 Si 0.705 3.295 16 H -0.204 1.204 17 H -0.210 1.210 18 H -0.191 1.191 19 H 0.093 0.907 20 H 0.105 0.895 21 H 0.106 0.894 22 H 0.198 0.802 23 H 0.165 0.835 24 H 0.090 0.910 25 H 0.118 0.882 26 H 0.090 0.910 27 H 0.035 0.965 28 H 0.152 0.848 29 H 0.046 0.954 30 H -0.003 1.003 31 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.100 16.449 -7.119 18.046 hybrid contribution -0.072 0.103 1.368 1.373 sum 2.028 16.552 -5.751 17.640 Atomic orbital electron populations 1.21845 0.74617 1.04308 1.03494 1.48489 1.06464 1.03506 1.57210 1.77309 1.01915 1.08122 1.25574 1.23800 0.95137 0.95172 0.99943 1.21280 0.96481 0.94906 1.17798 1.21198 0.91309 0.90522 1.00025 1.20322 1.02386 0.87620 0.99336 1.21850 1.00839 0.90356 0.93521 1.60480 1.34317 1.14652 1.21529 1.20012 0.95922 0.95655 0.84731 1.21051 1.44567 0.94632 0.95370 0.90218 1.24901 0.94686 0.94730 0.98945 1.69895 1.47170 1.08778 1.27969 0.86829 0.79175 0.79466 0.84067 1.20356 1.21045 1.19145 0.90746 0.89457 0.89355 0.80196 0.83459 0.90982 0.88189 0.91023 0.96486 0.84833 0.95433 1.00307 0.92585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.95 11.27 59.85 0.67 1.62 16 2 N -0.37 -4.96 4.01 -63.89 -0.26 -5.22 16 3 N -0.31 -4.41 12.58 30.63 0.39 -4.02 16 4 C 0.04 0.56 12.03 -17.36 -0.21 0.35 16 5 C -0.28 -3.55 10.72 -40.01 -0.43 -3.98 16 6 C 0.10 1.31 6.19 -82.27 -0.51 0.80 16 7 C -0.06 -0.74 5.76 -27.88 -0.16 -0.90 16 8 C 0.07 1.05 5.67 -3.82 -0.02 1.03 16 9 N -0.68 -13.53 6.49 -115.06 -0.75 -14.27 16 10 C 0.16 3.96 4.51 -4.97 -0.02 3.94 16 11 C -0.52 -14.70 9.87 -34.44 -0.34 -15.04 16 12 H 0.08 2.44 8.06 -52.49 -0.42 2.01 16 13 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 14 N -0.90 -27.48 13.96 55.43 0.77 -26.71 16 15 Si 0.88 21.53 27.47 -169.99 -4.67 16.86 16 16 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 17 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 18 H -0.27 -6.34 6.54 56.52 0.37 -5.97 16 19 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 20 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 21 H 0.09 0.70 6.98 -51.92 -0.36 0.33 16 22 H 0.18 1.60 8.06 -52.48 -0.42 1.18 16 23 H 0.15 1.66 8.06 -52.49 -0.42 1.24 16 24 H 0.07 0.82 6.95 -51.93 -0.36 0.46 16 25 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 26 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 27 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.33 6.28 8.72 -39.29 -0.34 5.94 16 29 H 0.03 0.69 7.20 -51.93 -0.37 0.31 16 30 H -0.02 -0.50 7.57 -51.93 -0.39 -0.89 16 31 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 267.34 15.07 4.03 4.03 Total: -1.00 -32.57 267.34 -5.98 -38.55 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: -4.38 Total: 1.06 kcal Atomic # 6 Polarization: -9.16 SS G_CDS: -1.11 Total: -10.28 kcal Atomic # 7 Polarization: -50.38 SS G_CDS: 0.16 Total: -50.22 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.67 Total: 16.86 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -32.57 -5.98 -38.55 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230778572.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.876 kcal (2) G-P(sol) polarization free energy of solvation -32.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.550 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds