Wall clock time and date at job start Sun Mar 29 2020 22:00:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.40084 * 126.03058 * 2 1 4 4 C 1.30842 * 108.20250 * 179.73948 * 3 2 1 5 5 C 1.39868 * 108.20327 * 0.44521 * 4 3 2 6 6 C 1.34941 * 126.04014 * 180.02562 * 2 1 3 7 7 C 1.50696 * 126.13067 * 359.97438 * 6 2 1 8 8 C 1.53005 * 109.47260 * 265.00771 * 7 6 2 9 9 N 1.46897 * 109.47224 * 179.97438 * 8 7 6 10 10 C 1.46898 * 110.99983 * 179.97438 * 9 8 7 11 11 C 1.50704 * 109.46963 * 179.97438 * 10 9 8 12 12 H 1.07991 * 120.00042 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99738 * 179.97438 * 11 10 9 14 14 N 1.31513 * 119.99728 * 180.02562 * 13 11 10 15 15 Si 1.86801 * 119.99869 * 0.02562 * 13 11 10 16 16 H 1.48503 * 109.47362 * 89.99884 * 15 13 11 17 17 H 1.48504 * 109.46773 * 209.99515 * 15 13 11 18 18 H 1.48497 * 109.47393 * 329.99130 * 15 13 11 19 19 H 1.08994 * 109.47427 * 269.96961 * 1 2 3 20 20 H 1.08999 * 109.47247 * 29.97548 * 1 2 3 21 21 H 1.09007 * 109.46720 * 149.97509 * 1 2 3 22 22 H 1.08007 * 125.90122 * 180.26287 * 4 3 2 23 23 H 1.08002 * 126.04477 * 179.82088 * 5 4 3 24 24 H 1.09002 * 109.46733 * 25.00405 * 7 6 2 25 25 H 1.08998 * 109.47609 * 145.00695 * 7 6 2 26 26 H 1.09002 * 109.46948 * 299.99502 * 8 7 6 27 27 H 1.08995 * 109.47549 * 59.99195 * 8 7 6 28 28 H 1.00894 * 111.00031 * 303.95049 * 9 8 7 29 29 H 1.09001 * 109.47373 * 299.99945 * 10 9 8 30 30 H 1.09002 * 109.47013 * 60.00456 * 10 9 8 31 31 H 0.97002 * 119.99826 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2890 1.1329 0.0000 4 6 3.5346 0.7323 0.0057 5 6 3.5438 -0.6663 -0.0009 6 6 2.2589 -1.0911 -0.0005 7 6 1.7975 -2.5257 -0.0006 8 6 1.7614 -3.0500 1.4364 9 7 1.3110 -4.4482 1.4363 10 6 1.2645 -4.9863 2.8024 11 6 0.7986 -6.4190 2.7623 12 1 0.5613 -6.8834 1.8167 13 6 0.6765 -7.1372 3.9330 14 7 0.2704 -8.3876 3.8980 15 14 1.0876 -6.3340 5.5686 16 1 -0.1308 -5.6936 6.1259 17 1 1.5820 -7.3653 6.5160 18 1 2.1386 -5.3050 5.3645 19 1 -0.3634 -0.0005 1.0276 20 1 -0.3634 0.8902 -0.5134 21 1 -0.3633 -0.8898 -0.5143 22 1 4.4053 1.3713 0.0112 23 1 4.4212 -1.2961 -0.0013 24 1 0.7995 -2.5863 -0.4346 25 1 2.4874 -3.1293 -0.5903 26 1 2.7594 -2.9894 1.8704 27 1 1.0715 -2.4464 2.0262 28 1 0.4154 -4.5396 0.9807 29 1 2.2593 -4.9396 3.2454 30 1 0.5716 -4.3961 3.4020 31 1 0.1841 -8.8927 4.7216 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230778572.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:32 Heat of formation + Delta-G solvation = 48.583310 kcal Electronic energy + Delta-G solvation = -13124.906093 eV Core-core repulsion = 10827.896944 eV Total energy + Delta-G solvation = -2297.009149 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.15802 -37.60915 -34.98051 -34.16632 -33.10624 -30.12609 -27.82572 -27.53326 -23.88501 -22.97643 -22.05101 -20.57709 -18.96334 -17.67365 -16.91947 -16.36409 -16.27987 -15.60860 -15.20042 -14.84410 -14.52433 -14.30588 -14.09281 -13.60985 -13.35422 -13.22464 -12.99102 -12.63680 -12.27339 -12.08574 -11.82118 -11.56708 -11.49012 -10.82486 -10.21858 -9.46039 -9.20858 -8.30855 -6.35364 0.88780 1.33930 1.36503 1.47290 1.65216 1.90223 2.33195 3.03306 3.32364 3.72282 3.95554 3.99653 4.23001 4.36002 4.36851 4.51899 4.62288 4.69000 4.78940 4.84248 4.94345 5.01269 5.10409 5.31280 5.51577 5.76474 5.91446 6.09923 6.52361 6.64173 6.75305 6.76187 7.29857 8.85749 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.053742 B = 0.005675 C = 0.005585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.885830 B = 4932.672468 C = 5012.394774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.381 5.381 3 N -0.337 5.337 4 C 0.043 3.957 5 C -0.286 4.286 6 C 0.086 3.914 7 C -0.044 4.044 8 C 0.071 3.929 9 N -0.686 5.686 10 C 0.174 3.826 11 C -0.529 4.529 12 H 0.041 0.959 13 C 0.010 3.990 14 N -0.946 5.946 15 Si 0.948 3.052 16 H -0.266 1.266 17 H -0.280 1.280 18 H -0.252 1.252 19 H 0.077 0.923 20 H 0.098 0.902 21 H 0.105 0.895 22 H 0.210 0.790 23 H 0.160 0.840 24 H 0.089 0.911 25 H 0.103 0.897 26 H 0.065 0.935 27 H 0.019 0.981 28 H 0.341 0.659 29 H 0.024 0.976 30 H -0.015 1.015 31 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.919 17.515 -6.689 18.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.164 5.164 3 N -0.159 5.159 4 C -0.142 4.142 5 C -0.315 4.315 6 C -0.043 4.043 7 C -0.083 4.083 8 C -0.059 4.059 9 N -0.317 5.317 10 C 0.045 3.955 11 C -0.567 4.567 12 H 0.060 0.940 13 C -0.188 4.188 14 N -0.586 5.586 15 Si 0.772 3.228 16 H -0.191 1.191 17 H -0.206 1.206 18 H -0.176 1.176 19 H 0.096 0.904 20 H 0.117 0.883 21 H 0.123 0.877 22 H 0.227 0.773 23 H 0.177 0.823 24 H 0.107 0.893 25 H 0.121 0.879 26 H 0.084 0.916 27 H 0.038 0.962 28 H 0.158 0.842 29 H 0.042 0.958 30 H 0.003 0.997 31 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.555 18.140 -6.719 19.512 hybrid contribution -0.228 -0.428 1.136 1.236 sum 2.327 17.712 -5.582 18.716 Atomic orbital electron populations 1.22119 0.73033 1.05778 1.04183 1.48783 1.07550 1.03139 1.56890 1.77268 1.02855 1.09108 1.26664 1.24330 0.95555 0.95525 0.98779 1.21598 0.96907 0.95458 1.17555 1.21271 0.91769 0.90590 1.00650 1.20145 1.03580 0.87416 0.97149 1.21831 1.00206 0.88099 0.95813 1.60340 1.34859 1.17254 1.19201 1.19754 0.95340 0.93282 0.87091 1.21341 1.44434 0.96895 0.94028 0.94030 1.25843 0.94461 0.95205 1.03267 1.70043 1.48684 1.10583 1.29324 0.85703 0.79629 0.78770 0.78745 1.19144 1.20570 1.17592 0.90400 0.88329 0.87676 0.77327 0.82267 0.89305 0.87872 0.91626 0.96241 0.84159 0.95775 0.99710 0.92305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.53 11.27 127.77 1.44 2.97 16 2 N -0.38 -9.39 4.01 -356.04 -1.43 -10.82 16 3 N -0.34 -9.10 12.58 -57.02 -0.72 -9.81 16 4 C 0.04 0.98 12.03 85.23 1.02 2.01 16 5 C -0.29 -6.81 10.72 21.99 0.24 -6.57 16 6 C 0.09 2.12 6.19 41.41 0.26 2.38 16 7 C -0.04 -1.03 5.76 29.85 0.17 -0.86 16 8 C 0.07 2.14 5.67 86.31 0.49 2.63 16 9 N -0.69 -26.45 6.49 -517.93 -3.36 -29.81 16 10 C 0.17 8.18 4.51 85.56 0.39 8.56 16 11 C -0.53 -30.27 9.87 25.60 0.25 -30.02 16 12 H 0.04 2.62 8.06 -2.92 -0.02 2.60 16 13 C 0.01 0.58 5.47 84.66 0.46 1.04 16 14 N -0.95 -58.65 13.96 21.45 0.30 -58.35 16 15 Si 0.95 43.74 27.47 68.60 1.88 45.63 16 16 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 17 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 18 H -0.25 -10.95 6.54 99.48 0.65 -10.30 16 19 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 20 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 21 H 0.10 1.40 6.98 -2.38 -0.02 1.38 16 22 H 0.21 3.20 8.06 -2.91 -0.02 3.17 16 23 H 0.16 3.26 8.06 -2.91 -0.02 3.24 16 24 H 0.09 1.80 6.95 -2.39 -0.02 1.78 16 25 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 26 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 27 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.34 12.43 8.72 -89.70 -0.78 11.65 16 29 H 0.02 1.16 7.20 -2.39 -0.02 1.14 16 30 H -0.01 -0.67 7.57 -2.39 -0.02 -0.69 16 31 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 Total: -1.00 -69.37 267.34 1.67 -67.69 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: 0.28 Total: 13.34 kcal Atomic # 6 Polarization: -22.58 SS G_CDS: 4.72 Total: -17.86 kcal Atomic # 7 Polarization: -103.60 SS G_CDS: -5.21 Total: -108.80 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 1.88 Total: 45.63 kcal Total: -69.37 1.67 -67.69 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230778572.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.278 kcal (2) G-P(sol) polarization free energy of solvation -69.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.694 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds