Wall clock time and date at job start Sun Mar 29 2020 21:59:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46495 * 109.47103 * 2 1 4 4 C 1.34953 * 126.03197 * 125.26558 * 3 2 1 5 5 C 1.35323 * 107.74107 * 180.14751 * 4 3 2 6 6 C 1.50701 * 126.03838 * 179.87044 * 5 4 3 7 7 N 1.46903 * 109.47245 * 269.71464 * 6 5 4 8 8 C 1.46893 * 110.99924 * 179.97438 * 7 6 5 9 9 C 1.50706 * 109.47176 * 179.97438 * 8 7 6 10 10 H 1.07999 * 119.99515 * 0.02562 * 9 8 7 11 11 C 1.37870 * 120.00176 * 180.02562 * 9 8 7 12 12 N 1.31520 * 119.99883 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00043 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.47216 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47389 * 119.99848 * 13 11 9 16 16 H 1.48501 * 109.47057 * 239.99829 * 13 11 9 17 17 C 1.39873 * 107.91926 * 359.61218 * 5 4 3 18 18 N 1.30835 * 108.20227 * 0.23891 * 17 5 4 19 19 H 1.08990 * 109.47159 * 59.99936 * 1 2 3 20 20 H 1.09002 * 109.46892 * 179.97438 * 1 2 3 21 21 H 1.08999 * 109.47000 * 299.99243 * 1 2 3 22 22 H 1.08999 * 109.46904 * 240.00209 * 2 1 3 23 23 H 1.08996 * 109.47276 * 120.00781 * 2 1 3 24 24 H 1.07988 * 126.13153 * 359.97438 * 4 3 2 25 25 H 1.08993 * 109.46849 * 149.71787 * 6 5 4 26 26 H 1.09003 * 109.46941 * 29.71113 * 6 5 4 27 27 H 1.00893 * 110.99793 * 303.95739 * 7 6 5 28 28 H 1.09001 * 109.46739 * 60.00281 * 8 7 6 29 29 H 1.09000 * 109.47767 * 300.00540 * 8 7 6 30 30 H 0.97004 * 119.99507 * 180.02562 * 12 11 9 31 31 H 1.07999 * 125.89451 * 180.22618 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8770 1.9196 0.8911 5 6 3.0716 3.2136 0.5462 6 6 3.9550 4.1998 1.2660 7 7 3.1724 4.8986 2.2943 8 6 4.0031 5.8698 3.0185 9 6 3.1678 6.5658 4.0622 10 1 2.1244 6.3116 4.1762 11 6 3.7357 7.5268 4.8713 12 7 5.0063 7.8367 4.7319 13 14 2.7006 8.3890 6.1653 14 1 1.3123 7.8640 6.1191 15 1 3.2801 8.1395 7.5097 16 1 2.6864 9.8492 5.8956 17 6 2.3125 3.4724 -0.5998 18 7 1.6808 2.3746 -0.9281 19 1 -0.3633 0.5138 -0.8899 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5137 0.8901 22 1 1.8933 -0.5138 -0.8900 23 1 1.8934 -0.5139 0.8899 24 1 3.3261 1.4100 1.7306 25 1 4.3468 4.9247 0.5526 26 1 4.7827 3.6696 1.7372 27 1 2.3623 5.3447 1.8910 28 1 4.3956 6.6063 2.3174 29 1 4.8310 5.3510 3.5018 30 1 5.4059 8.5126 5.3015 31 1 2.2573 4.4155 -1.1231 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234223390.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:59 Heat of formation + Delta-G solvation = 47.591200 kcal Electronic energy + Delta-G solvation = -13017.289063 eV Core-core repulsion = 10720.236893 eV Total energy + Delta-G solvation = -2297.052170 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.07626 -37.16378 -35.33337 -34.41422 -31.58203 -30.84294 -28.46018 -25.63619 -24.49078 -23.31108 -21.59224 -20.96598 -18.61181 -17.71698 -16.72711 -16.39582 -16.10217 -15.34996 -15.01609 -14.84988 -14.59549 -13.95084 -13.85170 -13.38651 -13.00970 -12.93638 -12.87674 -12.63848 -12.51931 -12.23240 -11.98743 -11.40101 -11.24394 -10.64248 -10.29772 -9.37428 -8.98324 -8.19772 -6.30772 0.99728 1.42963 1.43282 1.57425 1.69943 1.85271 2.42895 3.13303 3.60736 3.88330 4.05247 4.12642 4.19321 4.38643 4.46820 4.51983 4.76212 4.81863 4.86543 5.00426 5.12848 5.25055 5.31798 5.33672 5.64371 5.73333 6.06377 6.20504 6.52013 6.76289 6.78455 6.93344 7.40280 8.91796 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.053805 B = 0.005422 C = 0.005176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.275251 B = 5163.113708 C = 5408.589695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.121 3.879 3 N -0.375 5.375 4 C 0.074 3.926 5 C -0.246 4.246 6 C 0.140 3.860 7 N -0.684 5.684 8 C 0.206 3.794 9 C -0.534 4.534 10 H 0.061 0.939 11 C 0.002 3.998 12 N -0.934 5.934 13 Si 0.973 3.027 14 H -0.265 1.265 15 H -0.277 1.277 16 H -0.277 1.277 17 C 0.043 3.957 18 N -0.325 5.325 19 H 0.050 0.950 20 H 0.102 0.898 21 H 0.047 0.953 22 H 0.094 0.906 23 H 0.123 0.877 24 H 0.196 0.804 25 H 0.024 0.976 26 H 0.067 0.933 27 H 0.331 0.669 28 H -0.038 1.038 29 H 0.003 0.997 30 H 0.265 0.735 31 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.061 -14.952 -8.461 18.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.002 3.998 3 N -0.158 5.158 4 C -0.074 4.074 5 C -0.257 4.257 6 C 0.010 3.990 7 N -0.315 5.315 8 C 0.078 3.922 9 C -0.573 4.573 10 H 0.080 0.920 11 C -0.196 4.196 12 N -0.574 5.574 13 Si 0.797 3.203 14 H -0.189 1.189 15 H -0.203 1.203 16 H -0.203 1.203 17 C -0.142 4.142 18 N -0.147 5.147 19 H 0.069 0.931 20 H 0.120 0.880 21 H 0.066 0.934 22 H 0.113 0.887 23 H 0.141 0.859 24 H 0.213 0.787 25 H 0.042 0.958 26 H 0.085 0.915 27 H 0.148 0.852 28 H -0.021 1.021 29 H 0.022 0.978 30 H 0.074 0.926 31 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -6.705 -16.070 -8.756 19.490 hybrid contribution 0.583 1.859 0.538 2.021 sum -6.122 -14.210 -8.218 17.520 Atomic orbital electron populations 1.22013 0.93745 1.03982 1.01992 1.22051 0.96208 0.75959 1.05583 1.48972 1.35088 1.10989 1.20766 1.22691 0.94416 0.94503 0.95744 1.20046 1.09154 0.95583 1.00949 1.20034 0.94024 0.93641 0.91293 1.60618 1.09937 1.32685 1.28229 1.19238 0.92598 0.88333 0.91999 1.21578 0.97235 1.20320 1.18121 0.92032 1.25931 0.96277 0.97547 0.99863 1.70099 1.13225 1.33255 1.40859 0.85287 0.78836 0.77949 0.78221 1.18868 1.20266 1.20292 1.24023 0.95668 0.97909 0.96617 1.77166 1.24617 0.97691 1.15196 0.93067 0.87959 0.93393 0.88734 0.85900 0.78694 0.95782 0.91466 0.85193 1.02057 0.97849 0.92616 0.79278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.46 10.10 71.98 0.73 -1.74 16 2 C 0.12 1.90 7.23 86.38 0.62 2.52 16 3 N -0.38 -9.49 3.68 -348.07 -1.28 -10.77 16 4 C 0.07 2.00 11.36 83.54 0.95 2.95 16 5 C -0.25 -7.79 5.61 -20.14 -0.11 -7.91 16 6 C 0.14 5.16 6.17 85.56 0.53 5.69 16 7 N -0.68 -30.51 6.48 -521.98 -3.38 -33.90 16 8 C 0.21 11.26 5.44 85.56 0.47 11.73 16 9 C -0.53 -31.06 9.32 25.60 0.24 -30.82 16 10 H 0.06 3.51 7.81 -2.91 -0.02 3.49 16 11 C 0.00 0.11 5.46 84.65 0.46 0.57 16 12 N -0.93 -56.87 13.29 21.45 0.28 -56.58 16 13 Si 0.97 44.74 29.54 68.60 2.03 46.77 16 14 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 15 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 16 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 17 C 0.04 1.32 11.96 85.24 1.02 2.34 16 18 N -0.32 -9.82 12.42 -57.02 -0.71 -10.53 16 19 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 20 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 21 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 22 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 23 H 0.12 1.22 8.07 -2.39 -0.02 1.20 16 24 H 0.20 4.15 8.06 -2.92 -0.02 4.12 16 25 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 27 H 0.33 14.44 8.71 -89.70 -0.78 13.66 16 28 H -0.04 -2.23 8.14 -2.39 -0.02 -2.25 16 29 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 30 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 31 H 0.19 4.97 8.06 -2.91 -0.02 4.95 16 Total: -1.00 -69.30 273.52 2.17 -67.13 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: 0.32 Total: 12.55 kcal Atomic # 6 Polarization: -19.57 SS G_CDS: 4.90 Total: -14.67 kcal Atomic # 7 Polarization: -106.69 SS G_CDS: -5.08 Total: -111.77 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -69.30 2.17 -67.13 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234223390.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.723 kcal (2) G-P(sol) polarization free energy of solvation -69.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds