Wall clock time and date at job start Sun Mar 29 2020 21:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46489 * 1 3 3 C 1.36887 * 120.00172 * 2 1 4 4 H 1.07995 * 119.99872 * 206.82620 * 3 2 1 5 5 C 1.39012 * 119.99615 * 27.10034 * 3 2 1 6 6 N 1.31393 * 119.99645 * 217.01642 * 5 3 2 7 7 Si 1.86800 * 120.00286 * 37.01885 * 5 3 2 8 8 H 1.48497 * 109.46983 * 95.45353 * 7 5 3 9 9 H 1.48499 * 109.46940 * 215.45053 * 7 5 3 10 10 H 1.48498 * 109.46828 * 335.45136 * 7 5 3 11 11 C 1.34779 * 119.99982 * 180.02562 * 2 1 3 12 12 O 1.21721 * 120.00179 * 174.89971 * 11 2 1 13 13 C 1.46639 * 119.99996 * 354.89302 * 11 2 1 14 14 C 1.36776 * 126.85023 * 5.41654 * 13 11 2 15 15 N 1.33304 * 107.77830 * 179.97438 * 14 13 11 16 16 C 1.30863 * 109.70133 * 0.02562 * 15 14 13 17 17 N 1.34545 * 109.17636 * 359.76765 * 16 15 14 18 18 C 1.46501 * 126.47835 * 180.23338 * 17 16 15 19 19 H 1.09000 * 109.47578 * 1.69436 * 1 2 3 20 20 H 1.09000 * 109.47626 * 121.69643 * 1 2 3 21 21 H 1.09005 * 109.47491 * 241.70231 * 1 2 3 22 22 H 0.96995 * 120.00066 * 179.97438 * 6 5 3 23 23 H 1.08001 * 126.11466 * 359.97438 * 14 13 11 24 24 H 1.08003 * 125.41511 * 179.97438 * 16 15 14 25 25 H 1.08997 * 109.46793 * 270.70637 * 18 17 16 26 26 H 1.08994 * 109.47339 * 30.71118 * 18 17 16 27 27 H 1.09011 * 109.47010 * 150.71218 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1494 1.1855 0.0000 4 1 3.1421 1.2357 -0.4221 5 6 1.5687 2.3232 0.5485 6 7 1.7677 3.4962 -0.0092 7 14 0.5057 2.1846 2.0782 8 1 1.3293 2.4684 3.2807 9 1 -0.6073 3.1644 1.9980 10 1 -0.0501 0.8107 2.1718 11 6 2.1388 -1.1672 -0.0005 12 8 3.3524 -1.1693 -0.0942 13 6 1.4100 -2.4347 0.1120 14 6 0.0525 -2.6024 0.1207 15 7 -0.1957 -3.9068 0.2383 16 6 0.9326 -4.5664 0.3044 17 7 1.9574 -3.6981 0.2254 18 6 3.3841 -4.0295 0.2565 19 1 -0.3634 1.0272 -0.0304 20 1 -0.3634 -0.5399 -0.8744 21 1 -0.3634 -0.4872 0.9049 22 1 1.3623 4.2900 0.3732 23 1 -0.6862 -1.8181 0.0457 24 1 1.0264 -5.6378 0.4030 25 1 3.7344 -4.0303 1.2887 26 1 3.5375 -5.0164 -0.1800 27 1 3.9419 -3.2882 -0.3159 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234258320.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:29 Heat of formation + Delta-G solvation = 62.739298 kcal Electronic energy + Delta-G solvation = -13842.691427 eV Core-core repulsion = 11410.463033 eV Total energy + Delta-G solvation = -2432.228394 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.090 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.71832 -38.32060 -35.13827 -33.48790 -32.29469 -29.61791 -27.12836 -26.28412 -25.21421 -21.86868 -20.97421 -18.95836 -17.34802 -16.54349 -15.78585 -15.62688 -15.19022 -14.28265 -13.95613 -13.53841 -13.37854 -12.66965 -12.64005 -12.48670 -12.36956 -12.17566 -11.21261 -10.77784 -10.49839 -9.90430 -9.84241 -9.32069 -9.13001 -8.65912 -8.12212 -7.95798 -6.65127 -3.93339 1.92331 3.01653 3.06052 3.19547 3.24838 3.35015 4.06114 4.09753 4.43110 4.87390 4.89437 5.03827 5.38457 5.44791 5.59414 5.78857 5.86695 5.95265 6.08375 6.32704 6.52081 6.94799 7.33549 7.47252 8.13243 8.27691 8.37868 8.84336 9.20155 9.67579 10.45014 Molecular weight = 209.09amu Principal moments of inertia in cm(-1) A = 0.046199 B = 0.010960 C = 0.009677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.928732 B = 2554.115594 C = 2892.631592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.432 5.432 3 C -0.330 4.330 4 H 0.113 0.887 5 C 0.072 3.928 6 N -0.827 5.827 7 Si 0.848 3.152 8 H -0.277 1.277 9 H -0.279 1.279 10 H -0.251 1.251 11 C 0.511 3.489 12 O -0.583 6.583 13 C -0.042 4.042 14 C -0.023 4.023 15 N -0.501 5.501 16 C 0.173 3.827 17 N -0.434 5.434 18 C 0.071 3.929 19 H 0.075 0.925 20 H 0.062 0.938 21 H 0.063 0.937 22 H 0.278 0.722 23 H 0.193 0.807 24 H 0.203 0.797 25 H 0.073 0.927 26 H 0.079 0.921 27 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.909 -10.852 1.498 11.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.150 5.150 3 C -0.456 4.456 4 H 0.130 0.870 5 C -0.138 4.138 6 N -0.460 5.460 7 Si 0.672 3.328 8 H -0.203 1.203 9 H -0.205 1.205 10 H -0.175 1.175 11 C 0.301 3.699 12 O -0.469 6.469 13 C -0.160 4.160 14 C -0.174 4.174 15 N -0.220 5.220 16 C -0.108 4.108 17 N -0.116 5.116 18 C -0.072 4.072 19 H 0.094 0.906 20 H 0.080 0.920 21 H 0.081 0.919 22 H 0.088 0.912 23 H 0.210 0.790 24 H 0.220 0.780 25 H 0.092 0.908 26 H 0.098 0.902 27 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -2.928 -10.988 1.450 11.463 hybrid contribution 0.251 0.391 0.922 1.032 sum -2.677 -10.597 2.371 11.184 Atomic orbital electron populations 1.22588 0.82759 1.02845 1.00342 1.43299 1.04454 1.04996 1.62267 1.19028 1.04009 0.82572 1.40033 0.86971 1.25247 0.96561 0.94526 0.97502 1.69990 1.40823 0.99865 1.35363 0.87455 0.80277 0.79668 0.85376 1.20320 1.20487 1.17497 1.16589 0.86442 0.81734 0.85104 1.90610 1.13355 1.86608 1.56286 1.21389 0.94088 0.86969 1.13557 1.23695 0.93614 0.94140 1.05967 1.70063 1.26589 1.05325 1.20033 1.24881 0.82050 0.97373 1.06513 1.45171 1.08256 1.06054 1.52093 1.22195 0.78067 1.02815 1.04077 0.90591 0.91996 0.91912 0.91207 0.79040 0.78035 0.90806 0.90228 0.87365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.16 6.43 59.84 0.38 1.55 15 2 N -0.43 -10.65 2.72 -123.71 -0.34 -10.98 15 3 C -0.33 -9.19 9.45 -15.01 -0.14 -9.33 15 4 H 0.11 3.49 7.64 -52.49 -0.40 3.09 15 5 C 0.07 1.90 4.79 -17.45 -0.08 1.81 15 6 N -0.83 -22.74 13.96 55.50 0.77 -21.97 15 7 Si 0.85 19.22 26.40 -169.99 -4.49 14.74 15 8 H -0.28 -6.48 7.11 56.52 0.40 -6.08 15 9 H -0.28 -6.10 7.11 56.52 0.40 -5.70 15 10 H -0.25 -5.36 5.08 56.52 0.29 -5.07 15 11 C 0.51 12.47 7.59 -12.87 -0.10 12.37 15 12 O -0.58 -15.65 14.57 5.17 0.08 -15.57 15 13 C -0.04 -0.87 6.85 -82.15 -0.56 -1.43 15 14 C -0.02 -0.43 9.85 -17.44 -0.17 -0.60 15 15 N -0.50 -8.97 11.20 -14.39 -0.16 -9.13 15 16 C 0.17 2.64 12.53 -90.52 -1.13 1.51 15 17 N -0.43 -7.45 3.17 -121.96 -0.39 -7.83 15 18 C 0.07 0.97 10.76 59.85 0.64 1.62 15 19 H 0.08 1.53 5.34 -51.93 -0.28 1.25 15 20 H 0.06 1.08 6.55 -51.93 -0.34 0.74 15 21 H 0.06 1.17 5.25 -51.93 -0.27 0.90 15 22 H 0.28 6.99 8.31 -40.82 -0.34 6.65 15 23 H 0.19 3.26 4.09 -52.49 -0.21 3.04 15 24 H 0.20 2.05 8.06 -52.48 -0.42 1.63 15 25 H 0.07 0.94 8.14 -51.93 -0.42 0.52 15 26 H 0.08 0.76 8.14 -51.93 -0.42 0.34 15 27 H 0.11 1.79 6.36 -51.92 -0.33 1.46 15 LS Contribution 227.43 15.07 3.43 3.43 Total: -1.00 -32.45 227.43 -4.61 -37.07 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: -2.35 Total: 2.76 kcal Atomic # 6 Polarization: 8.65 SS G_CDS: -1.16 Total: 7.49 kcal Atomic # 7 Polarization: -49.80 SS G_CDS: -0.11 Total: -49.91 kcal Atomic # 8 Polarization: -15.65 SS G_CDS: 0.08 Total: -15.57 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -4.49 Total: 14.74 kcal Total LS contribution 3.43 Total: 3.43 kcal Total: -32.45 -4.61 -37.07 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234258320.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.805 kcal (2) G-P(sol) polarization free energy of solvation -32.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.065 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds