Wall clock time and date at job start Sun Mar 29 2020 21:32:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34501 * 126.46837 * 2 1 4 4 N 1.30859 * 109.16049 * 180.27567 * 3 2 1 5 5 C 1.33314 * 109.68520 * 359.72025 * 4 3 2 6 6 C 1.36669 * 107.78790 * 0.02562 * 5 4 3 7 7 C 1.46765 * 126.84507 * 180.02562 * 6 5 4 8 8 O 1.21675 * 119.99801 * 184.91277 * 7 6 5 9 9 N 1.34777 * 119.99695 * 5.18808 * 7 6 5 10 10 C 1.46506 * 119.99494 * 174.27552 * 9 7 6 11 11 C 1.50701 * 109.46818 * 180.02562 * 10 9 7 12 12 H 1.08000 * 120.00323 * 359.97438 * 11 10 9 13 13 C 1.37879 * 119.99882 * 180.02562 * 11 10 9 14 14 N 1.31507 * 119.99894 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 119.99844 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.47319 * 59.99747 * 15 13 11 17 17 H 1.48502 * 109.46771 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.46988 * 299.99729 * 15 13 11 19 19 H 1.08998 * 109.47527 * 272.11325 * 1 2 3 20 20 H 1.08998 * 109.47604 * 32.12034 * 1 2 3 21 21 H 1.09005 * 109.46598 * 152.11714 * 1 2 3 22 22 H 1.07996 * 125.41919 * 359.97438 * 3 2 1 23 23 H 1.08005 * 126.10515 * 179.97438 * 5 4 3 24 24 H 0.96997 * 120.00741 * 354.27204 * 9 7 6 25 25 H 1.08997 * 109.47177 * 299.99371 * 10 9 7 26 26 H 1.08995 * 109.46903 * 60.00162 * 10 9 7 27 27 H 0.96999 * 119.99881 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2644 1.0816 0.0000 4 7 3.5138 0.6923 -0.0059 5 6 3.5691 -0.6397 -0.0038 6 6 2.2862 -1.1108 0.0033 7 6 1.8650 -2.5167 0.0083 8 8 0.6842 -2.7983 -0.0757 9 7 2.7856 -3.4956 0.1117 10 6 2.3593 -4.8911 0.2431 11 6 3.5725 -5.7798 0.3410 12 1 4.5620 -5.3483 0.3082 13 6 3.4191 -7.1438 0.4715 14 7 2.2142 -7.6692 0.5109 15 14 4.9229 -8.2454 0.5922 16 1 5.7253 -7.8593 1.7805 17 1 4.4908 -9.6600 0.7242 18 1 5.7479 -8.0927 -0.6331 19 1 -0.3634 0.0379 1.0269 20 1 -0.3634 0.8703 -0.5464 21 1 -0.3633 -0.9084 -0.4806 22 1 1.9287 2.1081 -0.0004 23 1 4.4673 -1.2394 -0.0079 24 1 3.7304 -3.2763 0.0990 25 1 1.7540 -5.0029 1.1426 26 1 1.7702 -5.1746 -0.6290 27 1 2.1063 -8.6288 0.6023 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236074896.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:30 Heat of formation + Delta-G solvation = 18.483510 kcal Electronic energy + Delta-G solvation = -13136.352077 eV Core-core repulsion = 10702.204608 eV Total energy + Delta-G solvation = -2434.147469 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.090 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -42.01340 -38.47213 -34.55390 -33.72166 -32.40531 -29.97901 -27.11136 -27.00501 -23.52366 -21.89440 -21.02660 -19.60494 -17.90281 -16.41583 -15.81686 -15.43073 -15.24579 -14.47256 -14.13301 -13.83807 -13.55480 -12.92183 -12.87091 -12.63439 -11.99632 -11.87333 -11.02765 -10.89101 -10.36990 -10.13170 -9.62505 -9.45367 -9.28693 -8.78359 -8.51315 -7.93809 -6.19419 -4.26593 1.58717 2.69672 3.02313 3.25478 3.30175 3.31796 3.82448 4.03865 4.35162 4.61840 4.80646 5.08274 5.17143 5.21624 5.39904 5.54751 5.65974 6.24310 6.61016 7.13047 7.23061 7.31168 7.44781 7.61522 7.91662 7.98505 8.51591 8.70370 8.95470 9.39774 10.90778 Molecular weight = 209.09amu Principal moments of inertia in cm(-1) A = 0.059605 B = 0.006806 C = 0.006141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 469.645215 B = 4113.060823 C = 4558.119282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.429 5.429 3 C 0.189 3.811 4 N -0.500 5.500 5 C 0.025 3.975 6 C -0.069 4.069 7 C 0.575 3.425 8 O -0.561 6.561 9 N -0.694 5.694 10 C 0.252 3.748 11 C -0.545 4.545 12 H 0.065 0.935 13 C 0.065 3.935 14 N -0.886 5.886 15 Si 0.905 3.095 16 H -0.274 1.274 17 H -0.285 1.285 18 H -0.275 1.275 19 H 0.078 0.922 20 H 0.084 0.916 21 H 0.109 0.891 22 H 0.208 0.792 23 H 0.179 0.821 24 H 0.394 0.606 25 H 0.029 0.971 26 H 0.031 0.969 27 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.695 13.765 -0.739 13.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.110 5.110 3 C -0.093 4.093 4 N -0.218 5.218 5 C -0.128 4.128 6 C -0.187 4.187 7 C 0.360 3.640 8 O -0.442 6.442 9 N -0.342 5.342 10 C 0.131 3.869 11 C -0.583 4.583 12 H 0.083 0.917 13 C -0.139 4.139 14 N -0.523 5.523 15 Si 0.732 3.268 16 H -0.200 1.200 17 H -0.211 1.211 18 H -0.200 1.200 19 H 0.096 0.904 20 H 0.102 0.898 21 H 0.127 0.873 22 H 0.225 0.775 23 H 0.196 0.804 24 H 0.228 0.772 25 H 0.047 0.953 26 H 0.049 0.951 27 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.166 13.846 -0.764 13.916 hybrid contribution 0.432 -0.996 0.105 1.090 sum -0.735 12.851 -0.659 12.888 Atomic orbital electron populations 1.22290 0.75522 1.05755 1.04046 1.45244 1.08254 1.05926 1.51601 1.25018 0.85777 0.93510 1.04958 1.70095 1.19021 1.12346 1.20339 1.22642 0.95494 0.91093 1.03581 1.21252 0.91366 0.89576 1.16508 1.16874 0.86221 0.82886 0.78067 1.90724 1.17172 1.83961 1.52391 1.46214 1.08650 1.08667 1.70623 1.19189 0.96297 0.73613 0.97754 1.21174 0.92365 0.91847 1.52943 0.91723 1.24940 0.96433 0.97934 0.94608 1.69958 1.21378 1.12576 1.48414 0.86445 0.82273 0.79245 0.78796 1.19987 1.21083 1.19991 0.90373 0.89776 0.87290 0.77517 0.80430 0.77231 0.95291 0.95124 0.92338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.74 10.79 59.85 0.65 1.38 15 2 N -0.43 -6.08 3.17 -121.97 -0.39 -6.47 15 3 C 0.19 2.37 12.52 -90.57 -1.13 1.24 15 4 N -0.50 -7.59 11.20 -14.43 -0.16 -7.75 15 5 C 0.03 0.39 11.37 -17.48 -0.20 0.20 15 6 C -0.07 -1.19 6.91 -82.14 -0.57 -1.76 15 7 C 0.57 11.85 7.78 -12.81 -0.10 11.75 15 8 O -0.56 -13.12 14.83 5.21 0.08 -13.04 15 9 N -0.69 -14.73 5.53 -62.77 -0.35 -15.08 15 10 C 0.25 6.57 5.43 -5.19 -0.03 6.55 15 11 C -0.55 -14.59 9.28 -34.44 -0.32 -14.91 15 12 H 0.06 1.61 7.60 -52.49 -0.40 1.21 15 13 C 0.06 1.77 5.46 -17.82 -0.10 1.68 15 14 N -0.89 -25.77 13.29 55.43 0.74 -25.03 15 15 Si 0.91 20.67 29.54 -169.99 -5.02 15.65 15 16 H -0.27 -6.14 7.11 56.52 0.40 -5.74 15 17 H -0.29 -6.49 7.11 56.52 0.40 -6.09 15 18 H -0.27 -6.14 7.11 56.52 0.40 -5.74 15 19 H 0.08 0.79 8.14 -51.93 -0.42 0.37 15 20 H 0.08 0.62 8.14 -51.93 -0.42 0.19 15 21 H 0.11 1.51 6.30 -51.93 -0.33 1.19 15 22 H 0.21 1.58 8.06 -52.49 -0.42 1.16 15 23 H 0.18 2.36 7.47 -52.48 -0.39 1.97 15 24 H 0.39 7.22 7.27 -40.82 -0.30 6.92 15 25 H 0.03 0.83 8.14 -51.93 -0.42 0.41 15 26 H 0.03 0.88 8.14 -51.93 -0.42 0.46 15 27 H 0.27 7.30 8.31 -40.82 -0.34 6.96 15 LS Contribution 245.99 15.07 3.71 3.71 Total: -1.00 -32.76 245.99 -5.86 -38.62 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -2.66 Total: 3.27 kcal Atomic # 6 Polarization: 7.93 SS G_CDS: -1.80 Total: 6.13 kcal Atomic # 7 Polarization: -54.17 SS G_CDS: -0.16 Total: -54.33 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: 0.08 Total: -13.04 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -32.76 -5.86 -38.62 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236074896.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.104 kcal (2) G-P(sol) polarization free energy of solvation -32.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds