Wall clock time and date at job start Sun Mar 29 2020 21:32:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34501 * 126.46837 * 2 1 4 4 N 1.30859 * 109.16049 * 180.27567 * 3 2 1 5 5 C 1.33314 * 109.68520 * 359.72025 * 4 3 2 6 6 C 1.36669 * 107.78790 * 0.02562 * 5 4 3 7 7 C 1.46765 * 126.84507 * 180.02562 * 6 5 4 8 8 O 1.21675 * 119.99801 * 184.91277 * 7 6 5 9 9 N 1.34777 * 119.99695 * 5.18808 * 7 6 5 10 10 C 1.46506 * 119.99494 * 174.27552 * 9 7 6 11 11 C 1.50701 * 109.46818 * 180.02562 * 10 9 7 12 12 H 1.08000 * 120.00323 * 359.97438 * 11 10 9 13 13 C 1.37879 * 119.99882 * 180.02562 * 11 10 9 14 14 N 1.31507 * 119.99894 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 119.99844 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.47319 * 59.99747 * 15 13 11 17 17 H 1.48502 * 109.46771 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.46988 * 299.99729 * 15 13 11 19 19 H 1.08998 * 109.47527 * 272.11325 * 1 2 3 20 20 H 1.08998 * 109.47604 * 32.12034 * 1 2 3 21 21 H 1.09005 * 109.46598 * 152.11714 * 1 2 3 22 22 H 1.07996 * 125.41919 * 359.97438 * 3 2 1 23 23 H 1.08005 * 126.10515 * 179.97438 * 5 4 3 24 24 H 0.96997 * 120.00741 * 354.27204 * 9 7 6 25 25 H 1.08997 * 109.47177 * 299.99371 * 10 9 7 26 26 H 1.08995 * 109.46903 * 60.00162 * 10 9 7 27 27 H 0.96999 * 119.99881 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2644 1.0816 0.0000 4 7 3.5138 0.6923 -0.0059 5 6 3.5691 -0.6397 -0.0038 6 6 2.2862 -1.1108 0.0033 7 6 1.8650 -2.5167 0.0083 8 8 0.6842 -2.7983 -0.0757 9 7 2.7856 -3.4956 0.1117 10 6 2.3593 -4.8911 0.2431 11 6 3.5725 -5.7798 0.3410 12 1 4.5620 -5.3483 0.3082 13 6 3.4191 -7.1438 0.4715 14 7 2.2142 -7.6692 0.5109 15 14 4.9229 -8.2454 0.5922 16 1 5.7253 -7.8593 1.7805 17 1 4.4908 -9.6600 0.7242 18 1 5.7479 -8.0927 -0.6331 19 1 -0.3634 0.0379 1.0269 20 1 -0.3634 0.8703 -0.5464 21 1 -0.3633 -0.9084 -0.4806 22 1 1.9287 2.1081 -0.0004 23 1 4.4673 -1.2394 -0.0079 24 1 3.7304 -3.2763 0.0990 25 1 1.7540 -5.0029 1.1426 26 1 1.7702 -5.1746 -0.6290 27 1 2.1063 -8.6288 0.6023 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236074896.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:30 Heat of formation + Delta-G solvation = -5.064870 kcal Electronic energy + Delta-G solvation = -13137.373211 eV Core-core repulsion = 10702.204608 eV Total energy + Delta-G solvation = -2435.168603 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.090 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -43.16147 -40.16470 -36.31618 -35.00317 -34.33125 -31.39041 -28.99722 -27.98303 -25.30564 -23.49566 -22.19143 -21.17669 -19.36045 -18.11210 -17.07540 -17.01013 -16.92762 -16.14452 -15.79429 -15.03988 -14.91070 -14.41127 -14.01737 -13.97477 -13.77450 -13.56585 -12.94616 -12.67981 -12.23806 -11.53075 -11.40725 -10.88273 -10.80596 -10.70126 -10.01927 -9.57646 -8.29253 -6.45630 0.32051 1.44577 1.48812 1.55682 1.60306 1.87011 2.32949 2.35439 2.60238 3.06170 3.61950 3.86647 3.98902 4.12800 4.37173 4.48386 4.71211 5.02020 5.18512 5.21359 5.40219 5.44818 5.64527 5.82059 6.14608 6.62418 6.73532 6.90944 7.19612 7.34286 8.82739 Molecular weight = 209.09amu Principal moments of inertia in cm(-1) A = 0.059605 B = 0.006806 C = 0.006141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 469.645215 B = 4113.060823 C = 4558.119282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.434 5.434 3 C 0.220 3.780 4 N -0.527 5.527 5 C 0.041 3.959 6 C -0.109 4.109 7 C 0.576 3.424 8 O -0.598 6.598 9 N -0.692 5.692 10 C 0.270 3.730 11 C -0.558 4.558 12 H 0.085 0.915 13 C 0.007 3.993 14 N -0.930 5.930 15 Si 0.985 3.015 16 H -0.262 1.262 17 H -0.285 1.285 18 H -0.262 1.262 19 H 0.087 0.913 20 H 0.131 0.869 21 H 0.075 0.925 22 H 0.261 0.739 23 H 0.194 0.806 24 H 0.409 0.591 25 H -0.007 1.007 26 H -0.007 1.007 27 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.891 15.652 -0.709 15.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.114 5.114 3 C -0.062 4.062 4 N -0.245 5.245 5 C -0.114 4.114 6 C -0.226 4.226 7 C 0.363 3.637 8 O -0.482 6.482 9 N -0.341 5.341 10 C 0.147 3.853 11 C -0.596 4.596 12 H 0.103 0.897 13 C -0.193 4.193 14 N -0.568 5.568 15 Si 0.808 3.192 16 H -0.187 1.187 17 H -0.211 1.211 18 H -0.187 1.187 19 H 0.105 0.895 20 H 0.149 0.851 21 H 0.094 0.906 22 H 0.277 0.723 23 H 0.211 0.789 24 H 0.246 0.754 25 H 0.011 0.989 26 H 0.011 0.989 27 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.431 15.772 -0.737 15.795 hybrid contribution -0.135 -1.423 0.086 1.432 sum 0.296 14.348 -0.651 14.366 Atomic orbital electron populations 1.22449 0.74034 1.06224 1.05048 1.45482 1.09283 1.05389 1.51281 1.26091 0.84751 0.94832 1.00517 1.70178 1.20578 1.11723 1.22045 1.22963 0.95378 0.91718 1.01305 1.20702 0.92675 0.88336 1.20892 1.17334 0.85432 0.84400 0.76519 1.90700 1.18711 1.84916 1.53852 1.45887 1.09706 1.07088 1.71384 1.18630 0.95734 0.76502 0.94406 1.21572 0.93080 0.92316 1.52610 0.89708 1.26027 0.99777 0.99709 0.93822 1.70117 1.24143 1.13069 1.49495 0.85209 0.77969 0.76580 0.79490 1.18654 1.21086 1.18702 0.89465 0.85086 0.90642 0.72310 0.78936 0.75438 0.98861 0.98873 0.92184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.30 10.79 127.77 1.38 2.68 15 2 N -0.43 -11.36 3.17 -539.81 -1.71 -13.07 15 3 C 0.22 4.64 12.52 180.33 2.26 6.89 15 4 N -0.53 -14.40 11.20 -199.55 -2.24 -16.63 15 5 C 0.04 1.20 11.37 84.10 0.96 2.16 15 6 C -0.11 -3.66 6.91 40.01 0.28 -3.39 15 7 C 0.58 24.47 7.78 86.47 0.67 25.14 15 8 O -0.60 -29.42 14.83 -4.27 -0.06 -29.48 15 9 N -0.69 -30.23 5.53 -470.74 -2.61 -32.83 15 10 C 0.27 14.77 5.43 85.63 0.47 15.24 15 11 C -0.56 -30.23 9.28 25.60 0.24 -29.99 15 12 H 0.08 4.14 7.60 -2.91 -0.02 4.12 15 13 C 0.01 0.36 5.46 84.66 0.46 0.82 15 14 N -0.93 -55.60 13.29 21.45 0.28 -55.32 15 15 Si 0.98 42.11 29.54 68.60 2.03 44.13 15 16 H -0.26 -10.63 7.11 99.48 0.71 -9.92 15 17 H -0.29 -12.11 7.11 99.48 0.71 -11.40 15 18 H -0.26 -10.66 7.11 99.48 0.71 -9.96 15 19 H 0.09 1.62 8.14 -2.39 -0.02 1.60 15 20 H 0.13 1.41 8.14 -2.39 -0.02 1.39 15 21 H 0.07 2.12 6.30 -2.38 -0.02 2.11 15 22 H 0.26 2.37 8.06 -2.91 -0.02 2.35 15 23 H 0.19 4.79 7.47 -2.91 -0.02 4.77 15 24 H 0.41 15.01 7.27 -92.71 -0.67 14.34 15 25 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 15 26 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 15 27 H 0.27 15.06 8.31 -92.71 -0.77 14.29 15 Total: -1.00 -73.72 245.99 2.92 -70.80 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: 0.52 Total: 12.85 kcal Atomic # 6 Polarization: 12.85 SS G_CDS: 6.71 Total: 19.55 kcal Atomic # 7 Polarization: -111.59 SS G_CDS: -6.27 Total: -117.85 kcal Atomic # 8 Polarization: -29.42 SS G_CDS: -0.06 Total: -29.48 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.13 kcal Total: -73.72 2.92 -70.80 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236074896.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.733 kcal (2) G-P(sol) polarization free energy of solvation -73.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds