Wall clock time and date at job start Sun Mar 29 2020 21:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.37101 * 120.00014 * 2 1 4 4 H 1.07997 * 119.99878 * 204.51474 * 3 2 1 5 5 C 1.38953 * 119.99664 * 24.51358 * 3 2 1 6 6 N 1.31409 * 120.00156 * 12.45896 * 5 3 2 7 7 Si 1.86798 * 119.99546 * 192.45460 * 5 3 2 8 8 H 1.48503 * 109.47218 * 60.00606 * 7 5 3 9 9 H 1.48503 * 109.47154 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47457 * 300.00493 * 7 5 3 11 11 C 1.34774 * 119.99875 * 180.02562 * 2 1 3 12 12 O 1.21293 * 120.00157 * 179.97438 * 11 2 1 13 13 C 1.50699 * 120.00307 * 359.97438 * 11 2 1 14 14 H 1.08998 * 115.52363 * 325.50131 * 13 11 2 15 15 C 1.52997 * 117.46124 * 110.95519 * 13 11 2 16 16 H 1.08998 * 119.30129 * 356.29730 * 15 13 11 17 17 C 1.56190 * 117.01766 * 200.67614 * 15 13 11 18 18 C 1.54891 * 104.25460 * 272.19826 * 17 15 13 19 19 C 1.54887 * 102.75091 * 38.32566 * 18 17 15 20 20 C 1.52996 * 117.46320 * 179.97438 * 13 11 2 21 21 H 1.08997 * 119.29852 * 3.71295 * 20 13 11 22 22 H 1.09002 * 109.46654 * 265.72878 * 1 2 3 23 23 H 1.08993 * 109.47112 * 145.73161 * 1 2 3 24 24 H 1.08999 * 109.47115 * 25.72298 * 1 2 3 25 25 H 0.97003 * 119.99633 * 179.97438 * 6 5 3 26 26 H 1.09000 * 110.13082 * 153.66216 * 17 15 13 27 27 H 1.08997 * 110.89220 * 31.11276 * 17 15 13 28 28 H 1.09002 * 110.75730 * 280.00461 * 18 17 15 29 29 H 1.09001 * 110.75315 * 156.63790 * 18 17 15 30 30 H 1.09003 * 110.48479 * 203.38269 * 19 18 17 31 31 H 1.08999 * 110.49010 * 80.73111 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1506 1.1873 0.0000 4 1 3.1575 1.2295 -0.3881 5 6 1.5497 2.3364 0.4993 6 7 0.4348 2.2482 1.1893 7 14 2.3268 4.0066 0.1897 8 1 2.4087 4.2511 -1.2727 9 1 1.4971 5.0635 0.8220 10 1 3.6922 4.0331 0.7731 11 6 2.1389 -1.1672 -0.0005 12 8 3.3518 -1.1673 -0.0010 13 6 1.3855 -2.4723 -0.0005 14 1 0.4488 -2.4739 0.5569 15 6 1.4527 -3.3258 -1.2685 16 1 1.9826 -2.9439 -2.1411 17 6 0.3232 -4.3853 -1.4713 18 6 0.8481 -5.6467 -0.7416 19 6 1.5391 -5.0541 0.5115 20 6 2.2084 -3.7621 -0.0017 21 1 3.2950 -3.7016 0.0590 22 1 -0.3633 -0.0765 1.0249 23 1 -0.3633 -0.8492 -0.5786 24 1 -0.3633 0.9258 -0.4460 25 1 0.0156 3.0504 1.5382 26 1 0.1857 -4.5885 -2.5334 27 1 -0.6117 -4.0473 -1.0243 28 1 1.5668 -6.1813 -1.3627 29 1 0.0229 -6.2989 -0.4555 30 1 2.2889 -5.7453 0.8964 31 1 0.8018 -4.8226 1.2802 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000250493769.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:37 Heat of formation + Delta-G solvation = -9.764415 kcal Electronic energy + Delta-G solvation = -13842.232976 eV Core-core repulsion = 11510.400929 eV Total energy + Delta-G solvation = -2331.832047 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.56373 -37.44946 -34.57821 -31.71826 -31.11481 -27.92428 -26.38675 -24.89174 -22.73805 -20.47063 -19.34352 -18.57067 -16.86548 -16.25241 -15.16033 -14.80993 -14.21478 -13.87690 -13.69808 -12.92624 -12.68038 -12.26726 -11.69045 -11.39706 -11.22170 -11.02767 -10.97169 -10.92749 -10.80281 -10.68085 -10.37244 -10.30362 -9.52639 -9.35193 -8.95891 -8.33278 -7.61110 -6.29086 -3.85039 3.19797 3.26079 3.30282 3.59182 4.14006 4.33543 4.59502 5.01420 5.02781 5.20087 5.24327 5.51167 5.58432 5.67959 5.76471 5.79736 5.92384 5.96145 6.06360 6.17042 6.23622 6.38689 6.49115 6.61528 6.74677 6.90467 7.24065 7.59315 8.19131 8.53855 9.22880 9.47355 10.05610 10.75976 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.066754 B = 0.007690 C = 0.007340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 419.349043 B = 3640.132746 C = 3813.625377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.114 3.886 2 N -0.443 5.443 3 C -0.307 4.307 4 H 0.097 0.903 5 C 0.030 3.970 6 N -0.883 5.883 7 Si 0.927 3.073 8 H -0.274 1.274 9 H -0.284 1.284 10 H -0.273 1.273 11 C 0.474 3.526 12 O -0.590 6.590 13 C -0.138 4.138 14 H 0.107 0.893 15 C -0.149 4.149 16 H 0.111 0.889 17 C -0.094 4.094 18 C -0.122 4.122 19 C -0.095 4.095 20 C -0.141 4.141 21 H 0.116 0.884 22 H 0.049 0.951 23 H 0.028 0.972 24 H 0.073 0.927 25 H 0.268 0.732 26 H 0.066 0.934 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.770 -10.169 -3.088 11.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.030 4.030 2 N -0.160 5.160 3 C -0.435 4.435 4 H 0.114 0.886 5 C -0.173 4.173 6 N -0.522 5.522 7 Si 0.754 3.246 8 H -0.199 1.199 9 H -0.209 1.209 10 H -0.198 1.198 11 C 0.262 3.738 12 O -0.476 6.476 13 C -0.159 4.159 14 H 0.125 0.875 15 C -0.168 4.168 16 H 0.129 0.871 17 C -0.132 4.132 18 C -0.160 4.160 19 C -0.133 4.133 20 C -0.159 4.159 21 H 0.134 0.866 22 H 0.068 0.932 23 H 0.046 0.954 24 H 0.092 0.908 25 H 0.078 0.922 26 H 0.085 0.915 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.332 -9.995 -2.991 10.952 hybrid contribution 0.126 1.015 0.019 1.023 sum -3.207 -8.979 -2.971 9.987 Atomic orbital electron populations 1.21450 0.81216 0.99883 1.00434 1.43477 1.05510 1.04519 1.62534 1.19612 1.00676 0.84226 1.38957 0.88568 1.25351 0.96649 1.00131 0.95174 1.69994 1.19194 1.29705 1.33300 0.85988 0.79049 0.80910 0.78676 1.19926 1.20931 1.19783 1.19185 0.87333 0.83863 0.83392 1.90493 1.13971 1.87037 1.56070 1.22388 1.00844 0.91393 1.01267 0.87461 1.23597 1.00482 1.00516 0.92197 0.87091 1.22298 0.97041 0.93593 1.00235 1.22660 0.99524 0.97147 0.96645 1.21974 0.99052 0.94979 0.97262 1.23122 0.99094 0.92549 1.01169 0.86641 0.93208 0.95386 0.90817 0.92226 0.91549 0.91372 0.91476 0.91654 0.91407 0.91517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.65 8.17 59.85 0.49 3.14 16 2 N -0.44 -11.88 3.01 -122.19 -0.37 -12.24 16 3 C -0.31 -8.86 9.24 -14.93 -0.14 -9.00 16 4 H 0.10 2.89 7.45 -52.49 -0.39 2.50 16 5 C 0.03 0.81 5.05 -17.47 -0.09 0.73 16 6 N -0.88 -24.12 10.83 55.50 0.60 -23.52 16 7 Si 0.93 21.18 29.57 -169.99 -5.03 16.15 16 8 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 9 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 10 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 11 C 0.47 12.23 7.41 -10.99 -0.08 12.15 16 12 O -0.59 -17.21 16.04 5.55 0.09 -17.12 16 13 C -0.14 -2.73 4.33 -91.78 -0.40 -3.13 16 14 H 0.11 1.99 7.35 -51.93 -0.38 1.61 16 15 C -0.15 -2.50 6.81 -88.48 -0.60 -3.10 16 16 H 0.11 1.96 8.14 -51.93 -0.42 1.54 16 17 C -0.09 -1.21 6.66 -24.02 -0.16 -1.37 16 18 C -0.12 -1.39 6.91 -24.74 -0.17 -1.56 16 19 C -0.10 -1.26 6.63 -25.06 -0.17 -1.43 16 20 C -0.14 -2.44 6.34 -89.52 -0.57 -3.01 16 21 H 0.12 2.21 7.78 -51.93 -0.40 1.80 16 22 H 0.05 1.18 7.83 -51.93 -0.41 0.77 16 23 H 0.03 0.55 6.89 -51.93 -0.36 0.19 16 24 H 0.07 1.79 6.80 -51.93 -0.35 1.44 16 25 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 26 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 257.70 15.07 3.88 3.88 Total: -1.00 -31.35 257.70 -7.09 -38.44 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -4.39 Total: 1.00 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: -1.88 Total: -6.59 kcal Atomic # 7 Polarization: -36.00 SS G_CDS: 0.23 Total: -35.76 kcal Atomic # 8 Polarization: -17.21 SS G_CDS: 0.09 Total: -17.12 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.03 Total: 16.15 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -31.35 -7.09 -38.44 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250493769.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.674 kcal (2) G-P(sol) polarization free energy of solvation -31.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds