Wall clock time and date at job start Sun Mar 29 2020 21:36:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99951 * 2 1 4 4 H 1.48498 * 109.47171 * 270.00567 * 3 2 1 5 5 H 1.48500 * 109.46632 * 30.00818 * 3 2 1 6 6 H 1.48494 * 109.47053 * 150.00254 * 3 2 1 7 7 C 1.37877 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00248 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 359.97438 * 7 2 1 10 10 N 1.46505 * 109.47064 * 180.02562 * 9 7 2 11 11 C 1.34771 * 119.99622 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00597 * 0.02562 * 11 10 9 13 13 C 1.50701 * 119.99622 * 179.97438 * 11 10 9 14 14 H 1.08996 * 115.53240 * 325.58888 * 13 11 10 15 15 C 1.53003 * 117.46011 * 111.08229 * 13 11 10 16 16 H 1.08995 * 119.29493 * 356.29394 * 15 13 11 17 17 C 1.54264 * 118.19961 * 201.21516 * 15 13 11 18 18 C 1.54896 * 104.19538 * 272.21063 * 17 15 13 19 19 C 1.54820 * 102.74540 * 37.91674 * 18 17 15 20 20 C 1.53001 * 117.46324 * 180.08858 * 13 11 10 21 21 H 1.09004 * 119.29301 * 3.70840 * 20 13 11 22 22 H 0.97000 * 120.00333 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 24 24 H 1.09001 * 109.46980 * 300.00429 * 9 7 2 25 25 H 0.96996 * 119.99606 * 0.02562 * 10 9 7 26 26 H 1.09000 * 110.48904 * 30.88507 * 17 15 13 27 27 H 1.09001 * 110.48761 * 153.53690 * 17 15 13 28 28 H 1.09000 * 110.75729 * 156.25577 * 18 17 15 29 29 H 1.08998 * 110.75804 * 279.62560 * 18 17 15 30 30 H 1.09002 * 110.46994 * 203.39659 * 19 18 17 31 31 H 1.09008 * 110.48889 * 80.76761 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2031 -3.6127 -0.0005 11 6 1.7539 -4.8833 0.0000 12 8 0.5615 -5.1050 0.0000 13 6 2.7332 -6.0287 -0.0006 14 1 3.6548 -5.8586 -0.5571 15 6 2.8215 -6.8822 1.2662 16 1 2.2296 -6.6049 2.1384 17 6 4.1028 -7.7087 1.5006 18 6 3.8292 -9.0482 0.7724 19 6 3.0619 -8.5977 -0.4946 20 6 2.1599 -7.4473 -0.0021 21 1 1.0805 -7.5862 -0.0641 22 1 -0.4850 0.8400 0.0004 23 1 0.6241 -2.5568 -0.8903 24 1 0.6247 -2.5571 0.8897 25 1 3.1567 -3.4354 -0.0002 26 1 4.9660 -7.2065 1.0638 27 1 4.2577 -7.8785 2.5661 28 1 4.7642 -9.5398 0.5038 29 1 3.2102 -9.7023 1.3864 30 1 2.4573 -9.4162 -0.8852 31 1 3.7567 -8.2392 -1.2542 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251325553.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:19 Heat of formation + Delta-G solvation = -30.953253 kcal Electronic energy + Delta-G solvation = -13258.818011 eV Core-core repulsion = 10926.067147 eV Total energy + Delta-G solvation = -2332.750864 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.97539 -37.79986 -34.15393 -32.31913 -31.62523 -28.26180 -27.44281 -24.13631 -22.04716 -20.57491 -19.63953 -19.46578 -17.42535 -15.97194 -15.43590 -14.83686 -14.82453 -14.12842 -13.95525 -13.18667 -12.87668 -12.70442 -11.97256 -11.81068 -11.41926 -11.25671 -11.19313 -10.98869 -10.90556 -10.87605 -10.31553 -9.93705 -9.70898 -9.38751 -8.99446 -8.72595 -7.86298 -6.15808 -4.22763 3.07212 3.24972 3.30853 3.33508 3.85602 4.05308 4.34787 4.72364 4.78516 4.81412 5.20190 5.21979 5.25175 5.43163 5.45709 5.53286 5.65439 5.68891 5.76369 5.95888 6.00785 6.15276 6.31662 6.42607 7.32081 7.45836 7.52569 7.68311 7.97939 8.65459 8.79373 9.12963 9.44007 10.94507 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.068911 B = 0.005780 C = 0.005510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 406.221717 B = 4842.868246 C = 5080.178450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.543 4.543 8 H 0.063 0.937 9 C 0.249 3.751 10 N -0.707 5.707 11 C 0.526 3.474 12 O -0.557 6.557 13 C -0.156 4.156 14 H 0.115 0.885 15 C -0.143 4.143 16 H 0.113 0.887 17 C -0.095 4.095 18 C -0.123 4.123 19 C -0.096 4.096 20 C -0.136 4.136 21 H 0.120 0.880 22 H 0.266 0.734 23 H 0.027 0.973 24 H 0.027 0.973 25 H 0.391 0.609 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.267 -14.035 1.114 16.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.581 4.581 8 H 0.081 0.919 9 C 0.128 3.872 10 N -0.354 5.354 11 C 0.311 3.689 12 O -0.437 6.437 13 C -0.177 4.177 14 H 0.133 0.867 15 C -0.162 4.162 16 H 0.131 0.869 17 C -0.133 4.133 18 C -0.160 4.160 19 C -0.134 4.134 20 C -0.154 4.154 21 H 0.138 0.862 22 H 0.076 0.924 23 H 0.045 0.955 24 H 0.045 0.955 25 H 0.224 0.776 26 H 0.088 0.912 27 H 0.089 0.911 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 8.230 -14.026 1.120 16.300 hybrid contribution 0.819 1.188 -0.030 1.443 sum 9.048 -12.837 1.091 15.743 Atomic orbital electron populations 1.69978 1.06127 1.27303 1.48945 1.24957 0.94913 0.99462 0.94687 0.86403 0.79617 0.82601 0.78225 1.20445 1.20991 1.19737 1.21231 0.93285 0.90439 1.53176 0.91870 1.19125 0.88344 0.81979 0.97742 1.46390 1.11176 1.05913 1.71966 1.19498 0.88376 0.83722 0.77300 1.90644 1.16747 1.84925 1.51350 1.22455 1.00930 0.91655 1.02706 0.86730 1.23200 0.99460 1.01498 0.92037 0.86920 1.21988 0.95954 0.94655 1.00676 1.22684 0.99812 0.97150 0.96390 1.21977 0.97497 0.96490 0.97397 1.23205 1.00102 0.91162 1.00956 0.86173 0.92444 0.95504 0.95549 0.77599 0.91236 0.91084 0.91414 0.91279 0.91088 0.91355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.42 13.29 55.43 0.74 -25.68 16 2 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 3 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 16 4 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 6 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.54 -14.98 9.28 -34.44 -0.32 -15.30 16 8 H 0.06 1.63 7.60 -52.49 -0.40 1.23 16 9 C 0.25 6.77 5.43 -5.19 -0.03 6.74 16 10 N -0.71 -15.52 5.55 -61.47 -0.34 -15.86 16 11 C 0.53 11.08 7.61 -10.99 -0.08 11.00 16 12 O -0.56 -14.00 16.32 5.56 0.09 -13.91 16 13 C -0.16 -2.43 5.74 -91.77 -0.53 -2.95 16 14 H 0.11 1.53 8.14 -51.93 -0.42 1.10 16 15 C -0.14 -1.94 6.64 -89.54 -0.59 -2.53 16 16 H 0.11 1.64 8.14 -51.93 -0.42 1.22 16 17 C -0.10 -0.97 6.63 -25.07 -0.17 -1.14 16 18 C -0.12 -1.11 6.91 -24.77 -0.17 -1.28 16 19 C -0.10 -1.01 6.62 -25.11 -0.17 -1.17 16 20 C -0.14 -1.89 6.39 -89.54 -0.57 -2.47 16 21 H 0.12 1.89 7.78 -51.93 -0.40 1.49 16 22 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 23 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 24 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.39 7.40 8.32 -40.82 -0.34 7.06 16 26 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 LS Contribution 266.13 15.07 4.01 4.01 Total: -1.00 -31.84 266.13 -7.75 -39.60 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -4.50 Total: 3.27 kcal Atomic # 6 Polarization: -4.70 SS G_CDS: -2.72 Total: -7.42 kcal Atomic # 7 Polarization: -41.94 SS G_CDS: 0.40 Total: -41.55 kcal Atomic # 8 Polarization: -14.00 SS G_CDS: 0.09 Total: -13.91 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -31.84 -7.75 -39.60 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251325553.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.642 kcal (2) G-P(sol) polarization free energy of solvation -31.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds