Wall clock time and date at job start Sun Mar 29 2020 21:36:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99951 * 2 1 4 4 H 1.48498 * 109.47171 * 270.00567 * 3 2 1 5 5 H 1.48500 * 109.46632 * 30.00818 * 3 2 1 6 6 H 1.48494 * 109.47053 * 150.00254 * 3 2 1 7 7 C 1.37877 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00248 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 359.97438 * 7 2 1 10 10 N 1.46505 * 109.47064 * 180.02562 * 9 7 2 11 11 C 1.34771 * 119.99622 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00597 * 0.02562 * 11 10 9 13 13 C 1.50701 * 119.99622 * 179.97438 * 11 10 9 14 14 H 1.08996 * 115.53240 * 325.58888 * 13 11 10 15 15 C 1.53003 * 117.46011 * 111.08229 * 13 11 10 16 16 H 1.08995 * 119.29493 * 356.29394 * 15 13 11 17 17 C 1.54264 * 118.19961 * 201.21516 * 15 13 11 18 18 C 1.54896 * 104.19538 * 272.21063 * 17 15 13 19 19 C 1.54820 * 102.74540 * 37.91674 * 18 17 15 20 20 C 1.53001 * 117.46324 * 180.08858 * 13 11 10 21 21 H 1.09004 * 119.29301 * 3.70840 * 20 13 11 22 22 H 0.97000 * 120.00333 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 24 24 H 1.09001 * 109.46980 * 300.00429 * 9 7 2 25 25 H 0.96996 * 119.99606 * 0.02562 * 10 9 7 26 26 H 1.09000 * 110.48904 * 30.88507 * 17 15 13 27 27 H 1.09001 * 110.48761 * 153.53690 * 17 15 13 28 28 H 1.09000 * 110.75729 * 156.25577 * 18 17 15 29 29 H 1.08998 * 110.75804 * 279.62560 * 18 17 15 30 30 H 1.09002 * 110.46994 * 203.39659 * 19 18 17 31 31 H 1.09008 * 110.48889 * 80.76761 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2031 -3.6127 -0.0005 11 6 1.7539 -4.8833 0.0000 12 8 0.5615 -5.1050 0.0000 13 6 2.7332 -6.0287 -0.0006 14 1 3.6548 -5.8586 -0.5571 15 6 2.8215 -6.8822 1.2662 16 1 2.2296 -6.6049 2.1384 17 6 4.1028 -7.7087 1.5006 18 6 3.8292 -9.0482 0.7724 19 6 3.0619 -8.5977 -0.4946 20 6 2.1599 -7.4473 -0.0021 21 1 1.0805 -7.5862 -0.0641 22 1 -0.4850 0.8400 0.0004 23 1 0.6241 -2.5568 -0.8903 24 1 0.6247 -2.5571 0.8897 25 1 3.1567 -3.4354 -0.0002 26 1 4.9660 -7.2065 1.0638 27 1 4.2577 -7.8785 2.5661 28 1 4.7642 -9.5398 0.5038 29 1 3.2102 -9.7023 1.3864 30 1 2.4573 -9.4162 -0.8852 31 1 3.7567 -8.2392 -1.2542 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251325553.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:19 Heat of formation + Delta-G solvation = -52.505478 kcal Electronic energy + Delta-G solvation = -13259.752586 eV Core-core repulsion = 10926.067147 eV Total energy + Delta-G solvation = -2333.685439 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.31160 -39.30926 -36.18590 -34.38191 -32.67360 -29.51029 -29.11118 -25.82920 -23.77612 -21.61839 -21.11779 -20.62852 -19.13381 -17.82648 -17.13165 -16.48322 -16.19948 -15.72793 -15.39587 -14.53120 -14.14510 -14.04503 -13.93902 -13.69209 -12.96535 -12.72878 -12.43663 -12.25680 -12.22858 -11.95417 -11.65901 -11.52370 -11.10178 -10.93729 -10.83079 -10.57720 -9.89343 -8.31602 -6.49085 1.42146 1.44963 1.50764 1.56466 2.26858 2.47248 2.74937 3.03270 3.61004 3.74204 3.78875 4.15557 4.22175 4.26895 4.51936 4.54472 4.70933 4.84970 4.99220 5.07167 5.17767 5.19979 5.23865 5.25590 5.31232 5.44278 5.53417 5.65032 5.80784 6.61328 6.85003 7.20019 7.42529 8.80918 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.068911 B = 0.005780 C = 0.005510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 406.221717 B = 4842.868246 C = 5080.178450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.003 3.997 3 Si 0.988 3.012 4 H -0.269 1.269 5 H -0.283 1.283 6 H -0.255 1.255 7 C -0.558 4.558 8 H 0.085 0.915 9 C 0.265 3.735 10 N -0.701 5.701 11 C 0.520 3.480 12 O -0.607 6.607 13 C -0.163 4.163 14 H 0.146 0.854 15 C -0.136 4.136 16 H 0.094 0.906 17 C -0.089 4.089 18 C -0.116 4.116 19 C -0.090 4.090 20 C -0.140 4.140 21 H 0.092 0.908 22 H 0.270 0.730 23 H -0.013 1.013 24 H -0.014 1.014 25 H 0.409 0.591 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.094 0.906 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.512 -14.663 1.154 19.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.811 3.189 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.178 1.178 7 C -0.595 4.595 8 H 0.103 0.897 9 C 0.142 3.858 10 N -0.350 5.350 11 C 0.308 3.692 12 O -0.490 6.490 13 C -0.184 4.184 14 H 0.164 0.836 15 C -0.155 4.155 16 H 0.112 0.888 17 C -0.126 4.126 18 C -0.153 4.153 19 C -0.127 4.127 20 C -0.159 4.159 21 H 0.110 0.890 22 H 0.078 0.922 23 H 0.005 0.995 24 H 0.004 0.996 25 H 0.245 0.755 26 H 0.102 0.898 27 H 0.103 0.897 28 H 0.112 0.888 29 H 0.090 0.910 30 H 0.099 0.901 31 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 11.525 -14.686 1.162 18.705 hybrid contribution -0.286 1.327 -0.030 1.358 sum 11.239 -13.359 1.132 17.494 Atomic orbital electron populations 1.70144 1.08376 1.28679 1.49861 1.26110 0.95796 1.04038 0.93673 0.85105 0.78451 0.76663 0.78681 1.19470 1.20849 1.17845 1.21608 0.94333 0.90450 1.53145 0.89731 1.18585 0.88745 0.84445 0.94027 1.46144 1.11279 1.05330 1.72254 1.20526 0.88808 0.84560 0.75280 1.90612 1.19461 1.85667 1.53218 1.22358 1.00573 0.89957 1.05509 0.83594 1.23365 1.01259 1.00177 0.90665 0.88793 1.22056 0.94117 0.94476 1.01985 1.22687 1.00816 0.96559 0.95244 1.22030 0.97177 0.95045 0.98492 1.23336 0.99540 0.91334 1.01686 0.88964 0.92165 0.99494 0.99586 0.75483 0.89804 0.89748 0.88785 0.90970 0.90085 0.90133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.19 13.29 21.45 0.28 -56.91 16 2 C 0.00 0.19 5.46 84.65 0.46 0.65 16 3 Si 0.99 42.73 29.54 68.60 2.03 44.75 16 4 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 5 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 6 H -0.25 -10.22 7.11 99.48 0.71 -9.51 16 7 C -0.56 -31.08 9.28 25.60 0.24 -30.84 16 8 H 0.08 4.25 7.60 -2.91 -0.02 4.23 16 9 C 0.26 15.14 5.43 85.63 0.46 15.60 16 10 N -0.70 -31.56 5.55 -466.78 -2.59 -34.15 16 11 C 0.52 22.63 7.61 87.66 0.67 23.30 16 12 O -0.61 -32.37 16.32 -3.03 -0.05 -32.42 16 13 C -0.16 -4.92 5.74 -11.54 -0.07 -4.99 16 14 H 0.15 3.47 8.14 -2.39 -0.02 3.45 16 15 C -0.14 -3.50 6.64 -10.09 -0.07 -3.56 16 16 H 0.09 2.76 8.14 -2.39 -0.02 2.74 16 17 C -0.09 -1.49 6.63 31.67 0.21 -1.28 16 18 C -0.12 -1.62 6.91 31.86 0.22 -1.40 16 19 C -0.09 -1.61 6.62 31.64 0.21 -1.40 16 20 C -0.14 -3.80 6.39 -10.09 -0.06 -3.87 16 21 H 0.09 3.02 7.78 -2.38 -0.02 3.00 16 22 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 23 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 24 H -0.01 -0.89 8.14 -2.39 -0.02 -0.91 16 25 H 0.41 15.24 8.32 -92.71 -0.77 14.47 16 26 H 0.08 1.22 8.14 -2.39 -0.02 1.21 16 27 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 Total: -1.00 -72.64 266.13 2.29 -70.35 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: 0.34 Total: 16.17 kcal Atomic # 6 Polarization: -10.07 SS G_CDS: 2.27 Total: -7.80 kcal Atomic # 7 Polarization: -88.75 SS G_CDS: -2.30 Total: -91.06 kcal Atomic # 8 Polarization: -32.37 SS G_CDS: -0.05 Total: -32.42 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.75 kcal Total: -72.64 2.29 -70.35 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251325553.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.845 kcal (2) G-P(sol) polarization free energy of solvation -72.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds