Wall clock time and date at job start Sun Mar 29 2020 21:35:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86795 * 120.00105 * 2 1 4 4 H 1.48494 * 109.47425 * 269.99725 * 3 2 1 5 5 H 1.48499 * 109.47218 * 29.99581 * 3 2 1 6 6 H 1.48505 * 109.47256 * 149.99586 * 3 2 1 7 7 C 1.38950 * 119.99926 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00299 * 180.02562 * 7 2 1 9 9 N 1.37104 * 120.00030 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99773 * 180.27703 * 9 7 2 11 11 O 1.21293 * 120.00456 * 359.71934 * 10 9 7 12 12 C 1.50698 * 119.99538 * 179.72591 * 10 9 7 13 13 H 1.08994 * 115.57827 * 34.14458 * 12 10 9 14 14 C 1.52310 * 117.53814 * 180.02562 * 12 10 9 15 15 H 1.09005 * 115.91043 * 0.84010 * 14 12 10 16 16 C 1.52075 * 119.84034 * 217.19915 * 14 12 10 17 17 C 1.52881 * 110.50881 * 310.44098 * 16 14 12 18 18 C 1.53295 * 108.59082 * 305.11219 * 17 16 14 19 19 C 1.52875 * 108.58515 * 74.44259 * 18 17 16 20 20 C 1.52057 * 60.64091 * 107.37226 * 14 12 10 21 21 H 1.09004 * 117.25593 * 252.86452 * 20 14 12 22 22 H 0.96999 * 119.99863 * 0.02562 * 1 2 3 23 23 H 0.97001 * 119.99681 * 359.97438 * 9 7 2 24 24 H 1.09001 * 109.27177 * 70.70596 * 16 14 12 25 25 H 1.08997 * 109.26900 * 190.17553 * 16 14 12 26 26 H 1.08998 * 109.61158 * 185.38230 * 17 16 14 27 27 H 1.09001 * 109.76032 * 64.92806 * 17 16 14 28 28 H 1.09002 * 109.61809 * 314.71471 * 18 17 16 29 29 H 1.08995 * 109.76980 * 194.26261 * 18 17 16 30 30 H 1.09000 * 109.36223 * 185.26671 * 19 18 17 31 31 H 1.09000 * 109.35502 * 65.68451 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0464 -1.4000 5 1 1.4456 2.6527 0.6999 6 1 3.5457 1.4401 0.7001 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9973 -3.5579 0.0067 11 8 3.2102 -3.5580 0.0071 12 6 1.2437 -4.8629 0.0129 13 1 0.3040 -4.8663 -0.5393 14 6 2.0611 -6.1480 0.0204 15 1 3.1440 -6.0237 0.0350 16 6 1.5813 -7.3546 -0.7712 17 6 0.1128 -7.6479 -0.4631 18 6 -0.0457 -7.8088 1.0531 19 6 0.0359 -6.4265 1.7009 20 6 1.3261 -5.7247 1.2824 21 1 1.9284 -5.3417 2.1062 22 1 -0.4850 0.8400 -0.0004 23 1 0.3533 -2.3906 0.0005 24 1 1.6920 -7.1530 -1.8367 25 1 2.1848 -8.2224 -0.5053 26 1 -0.1889 -8.5686 -0.9624 27 1 -0.5085 -6.8224 -0.8105 28 1 0.7531 -8.4418 1.4395 29 1 -1.0117 -8.2613 1.2768 30 1 0.0186 -6.5341 2.7855 31 1 -0.8192 -5.8287 1.3856 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252633460.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:52 Heat of formation + Delta-G solvation = -59.169071 kcal Electronic energy + Delta-G solvation = -13646.414509 eV Core-core repulsion = 11312.440115 eV Total energy + Delta-G solvation = -2333.974394 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.15262 -39.14001 -36.04670 -33.88385 -33.25185 -31.63634 -27.78500 -25.69773 -23.37941 -23.06737 -20.87964 -19.97542 -19.03816 -18.20960 -16.85332 -16.04962 -15.92449 -15.53175 -14.95495 -14.79000 -14.65773 -14.22900 -13.58657 -13.18606 -13.03866 -12.96795 -12.62166 -12.47876 -12.15186 -11.95517 -11.71484 -11.57164 -11.11988 -10.81001 -10.59838 -10.30997 -10.07865 -8.51700 -6.01609 1.33872 1.38659 1.52341 1.85387 2.26504 2.80486 3.07960 3.24482 3.82185 3.88267 3.90378 4.07798 4.23533 4.39165 4.41695 4.52495 4.69510 4.72634 4.88380 5.05716 5.09154 5.15371 5.28884 5.35322 5.36991 5.38996 5.49725 5.58467 5.94590 6.53013 7.05468 7.49793 8.05205 8.65861 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.060684 B = 0.007043 C = 0.006714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 461.297925 B = 3974.565990 C = 4169.378973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.012 4.012 3 Si 0.997 3.003 4 H -0.268 1.268 5 H -0.267 1.267 6 H -0.273 1.273 7 C -0.342 4.342 8 H 0.078 0.922 9 N -0.565 5.565 10 C 0.461 3.539 11 O -0.642 6.642 12 C -0.184 4.184 13 H 0.127 0.873 14 C -0.104 4.104 15 H 0.081 0.919 16 C -0.083 4.083 17 C -0.122 4.122 18 C -0.112 4.112 19 C -0.088 4.088 20 C -0.113 4.113 21 H 0.081 0.919 22 H 0.280 0.720 23 H 0.397 0.603 24 H 0.066 0.934 25 H 0.085 0.915 26 H 0.086 0.914 27 H 0.056 0.944 28 H 0.070 0.930 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.111 -13.260 1.029 13.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.212 4.212 3 Si 0.820 3.180 4 H -0.194 1.194 5 H -0.191 1.191 6 H -0.198 1.198 7 C -0.471 4.471 8 H 0.096 0.904 9 N -0.200 5.200 10 C 0.249 3.751 11 O -0.531 6.531 12 C -0.205 4.205 13 H 0.145 0.855 14 C -0.123 4.123 15 H 0.099 0.901 16 C -0.120 4.120 17 C -0.159 4.159 18 C -0.150 4.150 19 C -0.125 4.125 20 C -0.132 4.132 21 H 0.100 0.900 22 H 0.089 0.911 23 H 0.230 0.770 24 H 0.085 0.915 25 H 0.104 0.896 26 H 0.105 0.895 27 H 0.075 0.925 28 H 0.088 0.912 29 H 0.101 0.899 30 H 0.097 0.903 31 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.475 -13.070 1.027 13.563 hybrid contribution 0.166 1.353 -0.045 1.363 sum -3.309 -11.717 0.982 12.215 Atomic orbital electron populations 1.69682 1.06926 1.29530 1.49714 1.26120 0.96613 1.02561 0.95862 0.84878 0.77835 0.76468 0.78831 1.19374 1.19140 1.19779 1.19729 0.92734 0.84109 1.50557 0.90416 1.41893 1.09308 1.04625 1.64126 1.20101 0.87420 0.85616 0.81920 1.90448 1.16116 1.88195 1.58311 1.22270 1.02242 0.89456 1.06568 0.85536 1.21861 0.97606 0.93736 0.99066 0.90114 1.20913 0.97436 0.94899 0.98779 1.21648 0.95220 1.02273 0.96789 1.21553 1.02845 0.95589 0.94969 1.21134 0.93550 0.96632 1.01171 1.22353 1.00401 1.00207 0.90245 0.90033 0.91074 0.76959 0.91518 0.89604 0.89536 0.92509 0.91171 0.89853 0.90340 0.91404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.86 13.05 21.66 0.28 -50.58 16 2 C -0.01 -0.63 5.50 84.93 0.47 -0.17 16 3 Si 1.00 43.85 29.55 68.60 2.03 45.87 16 4 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 5 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 6 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 7 C -0.34 -20.37 9.68 84.04 0.81 -19.55 16 8 H 0.08 4.92 7.16 -2.91 -0.02 4.90 16 9 N -0.56 -31.12 5.29 -306.98 -1.62 -32.74 16 10 C 0.46 24.02 7.57 87.66 0.66 24.68 16 11 O -0.64 -38.41 15.77 -3.07 -0.05 -38.46 16 12 C -0.18 -7.11 5.32 -11.55 -0.06 -7.17 16 13 H 0.13 4.38 7.27 -2.39 -0.02 4.37 16 14 C -0.10 -3.43 5.57 -11.64 -0.06 -3.49 16 15 H 0.08 3.12 7.55 -2.38 -0.02 3.10 16 16 C -0.08 -1.96 5.93 30.25 0.18 -1.78 16 17 C -0.12 -2.37 5.70 30.65 0.17 -2.19 16 18 C -0.11 -2.06 5.93 30.65 0.18 -1.88 16 19 C -0.09 -2.07 5.83 30.46 0.18 -1.90 16 20 C -0.11 -3.66 5.90 -10.98 -0.06 -3.72 16 21 H 0.08 2.96 8.14 -2.38 -0.02 2.94 16 22 H 0.28 14.37 8.31 -92.71 -0.77 13.60 16 23 H 0.40 20.82 7.90 -92.71 -0.73 20.08 16 24 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 25 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 26 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.06 1.21 7.12 -2.39 -0.02 1.19 16 28 H 0.07 1.23 8.04 -2.39 -0.02 1.21 16 29 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.07 1.62 8.06 -2.39 -0.02 1.61 16 Total: -1.00 -68.58 258.17 3.50 -65.09 By element: Atomic # 1 Polarization: 27.61 SS G_CDS: 0.39 Total: 28.00 kcal Atomic # 6 Polarization: -19.64 SS G_CDS: 2.47 Total: -17.18 kcal Atomic # 7 Polarization: -81.98 SS G_CDS: -1.34 Total: -83.32 kcal Atomic # 8 Polarization: -38.41 SS G_CDS: -0.05 Total: -38.46 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.87 kcal Total: -68.58 3.50 -65.09 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252633460.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.919 kcal (2) G-P(sol) polarization free energy of solvation -68.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds