Wall clock time and date at job start Sun Mar 29 2020 21:43:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.32998 * 119.99535 * 2 1 4 4 C 1.47101 * 120.00315 * 353.10530 * 3 2 1 5 5 O 1.21612 * 120.00033 * 353.77118 * 4 3 2 6 6 N 1.34782 * 119.99782 * 173.49023 * 4 3 2 7 7 C 1.46499 * 119.99532 * 180.27933 * 6 4 3 8 8 C 1.50702 * 109.46930 * 180.02562 * 7 6 4 9 9 H 1.08001 * 119.99847 * 359.97438 * 8 7 6 10 10 C 1.37875 * 120.00378 * 179.97438 * 8 7 6 11 11 N 1.31513 * 119.99511 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 120.00336 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.47203 * 59.99501 * 12 10 8 14 14 H 1.48501 * 109.47284 * 180.02562 * 12 10 8 15 15 H 1.48508 * 109.46979 * 299.99778 * 12 10 8 16 16 C 1.50690 * 120.00221 * 180.02562 * 2 1 3 17 17 C 1.53004 * 117.49810 * 8.74040 * 16 2 1 18 18 C 1.53002 * 117.49909 * 300.08674 * 16 2 1 19 19 H 1.08997 * 109.47510 * 84.53153 * 1 2 3 20 20 H 1.09003 * 109.47199 * 204.53668 * 1 2 3 21 21 H 1.09006 * 109.46966 * 324.52765 * 1 2 3 22 22 H 1.07999 * 119.99490 * 173.11084 * 3 2 1 23 23 H 0.96999 * 120.00064 * 0.27886 * 6 4 3 24 24 H 1.09000 * 109.47348 * 300.00042 * 7 6 4 25 25 H 1.08994 * 109.47665 * 60.00431 * 7 6 4 26 26 H 0.96999 * 119.99819 * 179.97438 * 11 10 8 27 27 H 1.09000 * 115.55245 * 154.41153 * 16 2 1 28 28 H 1.08997 * 117.49936 * 0.02562 * 17 16 2 29 29 H 1.09006 * 117.49930 * 145.02050 * 17 16 2 30 30 H 1.09004 * 117.49766 * 214.98081 * 18 16 2 31 31 H 1.09000 * 117.49661 * 359.96947 * 18 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 1.4443 2.4212 -0.1529 5 8 0.2521 2.4136 -0.3924 6 7 2.0980 3.5926 -0.0220 7 6 1.3721 4.8567 -0.1682 8 6 2.3254 6.0082 0.0223 9 1 3.3676 5.8175 0.2318 10 6 1.8672 7.3052 -0.0709 11 7 0.5982 7.5374 -0.3265 12 14 3.0486 8.7326 0.1659 13 1 4.1254 8.6584 -0.8540 14 1 2.3130 10.0140 0.0176 15 1 3.6468 8.6601 1.5233 16 6 2.2605 -1.3050 -0.0006 17 6 1.4521 -2.5874 -0.2074 18 6 2.0246 -2.2575 1.1733 19 1 -0.3634 0.0979 -1.0229 20 1 -0.3634 -0.9349 0.4268 21 1 -0.3633 0.8370 0.5964 22 1 3.2460 1.1552 0.1122 23 1 3.0490 3.5986 0.1691 24 1 0.9327 4.9102 -1.1643 25 1 0.5822 4.9109 0.5808 26 1 0.2757 8.4499 -0.3917 27 1 3.2637 -1.2685 -0.4253 28 1 0.3753 -2.4872 -0.3434 29 1 1.9236 -3.3948 -0.7679 30 1 2.8725 -2.8478 1.5207 31 1 1.3247 -1.9400 1.9462 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000253466894.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:47 Heat of formation + Delta-G solvation = -7.991476 kcal Electronic energy + Delta-G solvation = -13073.972580 eV Core-core repulsion = 10742.217413 eV Total energy + Delta-G solvation = -2331.755167 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.15374 -37.71109 -34.26680 -32.79688 -32.28486 -28.15930 -26.66242 -24.05030 -22.50622 -22.18325 -19.79714 -18.40571 -16.81826 -16.23412 -15.59167 -14.87382 -14.57455 -14.24509 -13.96773 -12.96337 -12.83588 -12.59140 -11.93747 -11.86699 -11.69372 -11.44237 -11.18493 -10.95017 -10.90812 -10.83771 -10.52341 -10.26203 -9.37607 -8.82766 -8.72007 -8.65479 -7.75192 -6.13864 -4.20577 1.69191 3.27205 3.31754 3.33466 3.73024 4.05444 4.15140 4.37877 4.74010 4.78102 4.84852 5.06392 5.22129 5.29829 5.46493 5.67188 5.72544 5.84455 5.95924 5.98590 6.11837 6.37061 6.74830 6.82412 7.37158 7.51758 7.56148 7.72403 8.00878 8.70679 8.82762 9.18710 9.46306 10.96444 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.081015 B = 0.005333 C = 0.005084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 345.532544 B = 5248.582854 C = 5506.502841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.023 4.023 3 C -0.212 4.212 4 C 0.527 3.473 5 O -0.556 6.556 6 N -0.709 5.709 7 C 0.249 3.751 8 C -0.543 4.543 9 H 0.062 0.938 10 C 0.064 3.936 11 N -0.886 5.886 12 Si 0.904 3.096 13 H -0.275 1.275 14 H -0.285 1.285 15 H -0.275 1.275 16 C -0.126 4.126 17 C -0.174 4.174 18 C -0.170 4.170 19 H 0.076 0.924 20 H 0.048 0.952 21 H 0.092 0.908 22 H 0.120 0.880 23 H 0.390 0.610 24 H 0.027 0.973 25 H 0.026 0.974 26 H 0.266 0.734 27 H 0.113 0.887 28 H 0.101 0.899 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.312 -16.251 1.665 16.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.025 4.025 3 C -0.233 4.233 4 C 0.315 3.685 5 O -0.438 6.438 6 N -0.356 5.356 7 C 0.129 3.871 8 C -0.582 4.582 9 H 0.080 0.920 10 C -0.140 4.140 11 N -0.524 5.524 12 Si 0.731 3.269 13 H -0.201 1.201 14 H -0.211 1.211 15 H -0.201 1.201 16 C -0.145 4.145 17 C -0.211 4.211 18 C -0.207 4.207 19 H 0.095 0.905 20 H 0.067 0.933 21 H 0.111 0.889 22 H 0.138 0.862 23 H 0.223 0.777 24 H 0.045 0.955 25 H 0.044 0.956 26 H 0.076 0.924 27 H 0.131 0.869 28 H 0.120 0.880 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 3.323 -16.034 1.466 16.440 hybrid contribution 1.239 0.911 0.176 1.548 sum 4.561 -15.123 1.641 15.881 Atomic orbital electron populations 1.21109 0.90935 1.01904 1.03637 1.21651 0.96084 0.92048 0.92719 1.22521 1.00056 0.92719 1.08019 1.18473 0.87171 0.84436 0.78449 1.90701 1.15180 1.87792 1.50142 1.46387 1.12597 1.07044 1.69562 1.19086 0.92455 0.78129 0.97470 1.21210 0.95316 0.90799 1.50846 0.91972 1.24949 0.95359 0.98953 0.94742 1.69967 1.13795 1.21112 1.47515 0.86473 0.80616 0.81044 0.78760 1.20072 1.21068 1.20077 1.21250 0.99973 0.88955 1.04282 1.23057 1.00570 0.97885 0.99610 1.22978 1.03607 1.02305 0.91777 0.90548 0.93328 0.88916 0.86177 0.77715 0.95550 0.95556 0.92423 0.86898 0.88033 0.88549 0.88489 0.88447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.80 7.90 36.01 0.28 -1.51 16 2 C -0.02 -0.33 5.81 -101.17 -0.59 -0.92 16 3 C -0.21 -3.40 9.67 -37.81 -0.37 -3.77 16 4 C 0.53 11.08 7.61 -12.66 -0.10 10.98 16 5 O -0.56 -13.43 13.28 5.27 0.07 -13.36 16 6 N -0.71 -15.64 5.54 -62.67 -0.35 -15.99 16 7 C 0.25 6.79 5.43 -5.19 -0.03 6.76 16 8 C -0.54 -15.05 9.28 -34.44 -0.32 -15.37 16 9 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 10 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 11 N -0.89 -26.46 13.29 55.43 0.74 -25.72 16 12 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 13 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 14 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 15 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 16 C -0.13 -1.39 6.01 -91.77 -0.55 -1.94 16 17 C -0.17 -1.60 9.77 -26.70 -0.26 -1.86 16 18 C -0.17 -1.56 10.10 -26.70 -0.27 -1.83 16 19 H 0.08 1.20 8.05 -51.93 -0.42 0.79 16 20 H 0.05 0.59 6.31 -51.93 -0.33 0.26 16 21 H 0.09 1.66 6.12 -51.93 -0.32 1.34 16 22 H 0.12 1.60 8.06 -52.49 -0.42 1.17 16 23 H 0.39 7.44 8.30 -40.82 -0.34 7.10 16 24 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 26 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 27 H 0.11 1.12 8.14 -51.93 -0.42 0.69 16 28 H 0.10 0.94 6.42 -51.93 -0.33 0.61 16 29 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 268.02 15.07 4.04 4.04 Total: -1.00 -31.50 268.02 -7.04 -38.54 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -4.23 Total: 4.19 kcal Atomic # 6 Polarization: -5.47 SS G_CDS: -2.29 Total: -7.77 kcal Atomic # 7 Polarization: -42.10 SS G_CDS: 0.39 Total: -41.71 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: 0.07 Total: -13.36 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -31.50 -7.04 -38.54 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253466894.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.552 kcal (2) G-P(sol) polarization free energy of solvation -31.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds