Wall clock time and date at job start Sun Mar 29 2020 21:43:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.32998 * 119.99535 * 2 1 4 4 C 1.47101 * 120.00315 * 353.10530 * 3 2 1 5 5 O 1.21612 * 120.00033 * 353.77118 * 4 3 2 6 6 N 1.34782 * 119.99782 * 173.49023 * 4 3 2 7 7 C 1.46499 * 119.99532 * 180.27933 * 6 4 3 8 8 C 1.50702 * 109.46930 * 180.02562 * 7 6 4 9 9 H 1.08001 * 119.99847 * 359.97438 * 8 7 6 10 10 C 1.37875 * 120.00378 * 179.97438 * 8 7 6 11 11 N 1.31513 * 119.99511 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 120.00336 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.47203 * 59.99501 * 12 10 8 14 14 H 1.48501 * 109.47284 * 180.02562 * 12 10 8 15 15 H 1.48508 * 109.46979 * 299.99778 * 12 10 8 16 16 C 1.50690 * 120.00221 * 180.02562 * 2 1 3 17 17 C 1.53004 * 117.49810 * 8.74040 * 16 2 1 18 18 C 1.53002 * 117.49909 * 300.08674 * 16 2 1 19 19 H 1.08997 * 109.47510 * 84.53153 * 1 2 3 20 20 H 1.09003 * 109.47199 * 204.53668 * 1 2 3 21 21 H 1.09006 * 109.46966 * 324.52765 * 1 2 3 22 22 H 1.07999 * 119.99490 * 173.11084 * 3 2 1 23 23 H 0.96999 * 120.00064 * 0.27886 * 6 4 3 24 24 H 1.09000 * 109.47348 * 300.00042 * 7 6 4 25 25 H 1.08994 * 109.47665 * 60.00431 * 7 6 4 26 26 H 0.96999 * 119.99819 * 179.97438 * 11 10 8 27 27 H 1.09000 * 115.55245 * 154.41153 * 16 2 1 28 28 H 1.08997 * 117.49936 * 0.02562 * 17 16 2 29 29 H 1.09006 * 117.49930 * 145.02050 * 17 16 2 30 30 H 1.09004 * 117.49766 * 214.98081 * 18 16 2 31 31 H 1.09000 * 117.49661 * 359.96947 * 18 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 1.4443 2.4212 -0.1529 5 8 0.2521 2.4136 -0.3924 6 7 2.0980 3.5926 -0.0220 7 6 1.3721 4.8567 -0.1682 8 6 2.3254 6.0082 0.0223 9 1 3.3676 5.8175 0.2318 10 6 1.8672 7.3052 -0.0709 11 7 0.5982 7.5374 -0.3265 12 14 3.0486 8.7326 0.1659 13 1 4.1254 8.6584 -0.8540 14 1 2.3130 10.0140 0.0176 15 1 3.6468 8.6601 1.5233 16 6 2.2605 -1.3050 -0.0006 17 6 1.4521 -2.5874 -0.2074 18 6 2.0246 -2.2575 1.1733 19 1 -0.3634 0.0979 -1.0229 20 1 -0.3634 -0.9349 0.4268 21 1 -0.3633 0.8370 0.5964 22 1 3.2460 1.1552 0.1122 23 1 3.0490 3.5986 0.1691 24 1 0.9327 4.9102 -1.1643 25 1 0.5822 4.9109 0.5808 26 1 0.2757 8.4499 -0.3917 27 1 3.2637 -1.2685 -0.4253 28 1 0.3753 -2.4872 -0.3434 29 1 1.9236 -3.3948 -0.7679 30 1 2.8725 -2.8478 1.5207 31 1 1.3247 -1.9400 1.9462 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000253466894.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:46 Heat of formation + Delta-G solvation = -29.126118 kcal Electronic energy + Delta-G solvation = -13074.889047 eV Core-core repulsion = 10742.217413 eV Total energy + Delta-G solvation = -2332.671634 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.72570 -38.77388 -36.20522 -34.35018 -34.03462 -29.93702 -28.27820 -25.56052 -23.92495 -23.17262 -21.45877 -19.71175 -18.58759 -17.60386 -17.16971 -16.57755 -16.18157 -15.82890 -15.32289 -14.49263 -14.36462 -13.99762 -13.86604 -13.59296 -12.91559 -12.83240 -12.67238 -12.43107 -12.23146 -12.17186 -11.81095 -11.51706 -11.29767 -10.79591 -10.49357 -10.02995 -9.58785 -8.29764 -6.46850 0.40487 1.42412 1.47024 1.55266 2.33511 2.36849 2.66491 3.04373 3.05776 3.67588 3.90789 3.98640 4.16521 4.22572 4.36521 4.68807 4.76695 4.84568 5.02528 5.06119 5.14995 5.17898 5.22929 5.29441 5.47163 5.53406 5.63307 5.76011 5.85029 6.63966 6.95872 7.22648 7.51952 8.82499 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.081015 B = 0.005333 C = 0.005084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 345.532544 B = 5248.582854 C = 5506.502841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.001 3.999 3 C -0.233 4.233 4 C 0.520 3.480 5 O -0.598 6.598 6 N -0.707 5.707 7 C 0.267 3.733 8 C -0.559 4.559 9 H 0.083 0.917 10 C 0.004 3.996 11 N -0.932 5.932 12 Si 0.987 3.013 13 H -0.262 1.262 14 H -0.284 1.284 15 H -0.262 1.262 16 C -0.145 4.145 17 C -0.167 4.167 18 C -0.158 4.158 19 H 0.065 0.935 20 H 0.080 0.920 21 H 0.058 0.942 22 H 0.154 0.846 23 H 0.407 0.593 24 H -0.014 1.014 25 H -0.013 1.013 26 H 0.269 0.731 27 H 0.131 0.869 28 H 0.098 0.902 29 H 0.118 0.882 30 H 0.120 0.880 31 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.765 -17.798 2.182 19.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.001 4.001 3 C -0.253 4.253 4 C 0.311 3.689 5 O -0.482 6.482 6 N -0.355 5.355 7 C 0.144 3.856 8 C -0.597 4.597 9 H 0.101 0.899 10 C -0.196 4.196 11 N -0.570 5.570 12 Si 0.810 3.190 13 H -0.186 1.186 14 H -0.209 1.209 15 H -0.186 1.186 16 C -0.163 4.163 17 C -0.203 4.203 18 C -0.195 4.195 19 H 0.084 0.916 20 H 0.099 0.901 21 H 0.077 0.923 22 H 0.171 0.829 23 H 0.242 0.758 24 H 0.004 0.996 25 H 0.005 0.995 26 H 0.078 0.922 27 H 0.148 0.852 28 H 0.116 0.884 29 H 0.136 0.864 30 H 0.138 0.862 31 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 5.811 -17.622 1.992 18.662 hybrid contribution 0.355 1.248 0.012 1.297 sum 6.166 -16.374 2.004 17.611 Atomic orbital electron populations 1.21057 0.92005 1.02137 1.02549 1.22003 0.95689 0.93522 0.88925 1.22364 1.01321 0.90206 1.11456 1.19371 0.86931 0.85680 0.76914 1.90684 1.17262 1.88493 1.51795 1.46132 1.13223 1.05861 1.70327 1.18525 0.92175 0.81022 0.93884 1.21599 0.96163 0.91072 1.50837 0.89918 1.26091 0.97242 1.02381 0.93865 1.70136 1.16329 1.22029 1.48512 0.85179 0.77988 0.76415 0.79453 1.18625 1.20929 1.18637 1.21303 1.00707 0.87466 1.06785 1.23188 1.00363 0.96961 0.99802 1.23093 1.04140 1.00909 0.91341 0.91600 0.90125 0.92311 0.82851 0.75760 0.99571 0.99547 0.92200 0.85153 0.88391 0.86366 0.86202 0.88952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.63 7.90 71.24 0.56 -3.07 16 2 C 0.00 0.02 5.81 -17.62 -0.10 -0.08 16 3 C -0.23 -7.26 9.67 23.43 0.23 -7.03 16 4 C 0.52 22.58 7.61 86.57 0.66 23.24 16 5 O -0.60 -30.60 13.28 -4.07 -0.05 -30.65 16 6 N -0.71 -32.11 5.54 -470.45 -2.61 -34.72 16 7 C 0.27 15.30 5.43 85.63 0.46 15.77 16 8 C -0.56 -31.41 9.28 25.60 0.24 -31.17 16 9 H 0.08 4.20 7.60 -2.91 -0.02 4.18 16 10 C 0.00 0.21 5.46 84.65 0.46 0.68 16 11 N -0.93 -57.31 13.29 21.45 0.28 -57.03 16 12 Si 0.99 43.02 29.54 68.60 2.03 45.04 16 13 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 14 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 15 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 16 C -0.14 -2.68 6.01 -11.54 -0.07 -2.75 16 17 C -0.17 -2.43 9.77 30.62 0.30 -2.13 16 18 C -0.16 -2.30 10.10 30.62 0.31 -1.99 16 19 H 0.07 2.12 8.05 -2.39 -0.02 2.10 16 20 H 0.08 1.84 6.31 -2.39 -0.02 1.83 16 21 H 0.06 2.20 6.12 -2.38 -0.01 2.18 16 22 H 0.15 3.70 8.06 -2.91 -0.02 3.67 16 23 H 0.41 15.46 8.30 -92.71 -0.77 14.69 16 24 H -0.01 -0.88 8.14 -2.39 -0.02 -0.90 16 25 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 26 H 0.27 15.44 8.31 -92.71 -0.77 14.66 16 27 H 0.13 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.10 1.51 6.42 -2.39 -0.02 1.50 16 29 H 0.12 1.27 8.14 -2.38 -0.02 1.25 16 30 H 0.12 1.25 8.14 -2.38 -0.02 1.23 16 31 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -71.65 268.02 3.05 -68.60 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: 0.35 Total: 17.30 kcal Atomic # 6 Polarization: -11.60 SS G_CDS: 3.05 Total: -8.55 kcal Atomic # 7 Polarization: -89.42 SS G_CDS: -2.32 Total: -91.74 kcal Atomic # 8 Polarization: -30.60 SS G_CDS: -0.05 Total: -30.65 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.04 kcal Total: -71.65 3.05 -68.60 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253466894.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.476 kcal (2) G-P(sol) polarization free energy of solvation -71.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds