Wall clock time and date at job start Sun Mar 29 2020 21:38:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34518 * 125.78860 * 2 1 4 4 C 1.41378 * 106.84260 * 180.02562 * 3 2 1 5 5 C 1.34519 * 106.84231 * 0.02562 * 4 3 2 6 6 C 1.50696 * 125.78992 * 180.02562 * 5 4 3 7 7 C 1.53002 * 109.46999 * 90.00090 * 6 5 4 8 8 N 1.46906 * 109.47053 * 179.97438 * 7 6 5 9 9 C 1.46895 * 110.99789 * 179.97438 * 8 7 6 10 10 C 1.50704 * 109.47030 * 179.97438 * 9 8 7 11 11 H 1.08001 * 119.99961 * 0.02562 * 10 9 8 12 12 C 1.37876 * 120.00406 * 180.02562 * 10 9 8 13 13 N 1.31520 * 119.99531 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 120.00291 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47158 * 59.99893 * 14 12 10 16 16 H 1.48501 * 109.46994 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.46885 * 299.99904 * 14 12 10 18 18 O 1.34302 * 108.41739 * 0.26112 * 5 4 3 19 19 H 1.09002 * 109.47330 * 90.00264 * 1 2 3 20 20 H 1.09010 * 109.46524 * 209.99673 * 1 2 3 21 21 H 1.08998 * 109.47372 * 329.99493 * 1 2 3 22 22 H 1.08000 * 126.57833 * 0.05043 * 3 2 1 23 23 H 1.08004 * 126.58244 * 180.02562 * 4 3 2 24 24 H 1.09001 * 109.47328 * 330.00015 * 6 5 4 25 25 H 1.09004 * 109.47043 * 209.99825 * 6 5 4 26 26 H 1.08992 * 109.47056 * 59.99641 * 7 6 5 27 27 H 1.09004 * 109.47006 * 299.99757 * 7 6 5 28 28 H 1.00902 * 111.00068 * 56.04103 * 8 7 6 29 29 H 1.08996 * 109.47424 * 299.99656 * 9 8 7 30 30 H 1.09002 * 109.47411 * 60.00282 * 9 8 7 31 31 H 0.96996 * 119.99726 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0912 0.0000 4 6 3.6308 0.6322 -0.0006 5 6 3.5814 -0.7121 -0.0015 6 6 4.7707 -1.6377 -0.0019 7 6 5.1728 -1.9519 1.4406 8 7 6.3317 -2.8547 1.4402 9 6 6.7471 -3.1784 2.8115 10 6 7.9352 -4.1047 2.7710 11 1 8.3413 -4.4209 1.8215 12 6 8.5038 -4.5486 3.9460 13 7 8.0095 -4.1631 5.1023 14 14 9.9768 -5.6961 3.8958 15 1 11.0978 -5.0319 3.1834 16 1 10.3967 -6.0235 5.2821 17 1 9.6074 -6.9448 3.1820 18 8 2.2925 -1.0894 -0.0073 19 1 -0.3634 0.0000 -1.0277 20 1 -0.3633 -0.8901 0.5138 21 1 -0.3634 0.8899 0.5139 22 1 1.9665 2.1204 0.0008 23 1 4.5212 1.2435 -0.0004 24 1 5.6042 -1.1582 -0.5152 25 1 4.5108 -2.5629 -0.5164 26 1 4.3393 -2.4313 1.9538 27 1 5.4326 -1.0267 1.9551 28 1 7.0972 -2.4602 0.9144 29 1 7.0184 -2.2617 3.3350 30 1 5.9246 -3.6659 3.3349 31 1 8.4097 -4.4751 5.9289 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259008463.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:09 Heat of formation + Delta-G solvation = -1.812154 kcal Electronic energy + Delta-G solvation = -12888.380529 eV Core-core repulsion = 10556.893317 eV Total energy + Delta-G solvation = -2331.487212 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.48554 -35.92897 -33.22775 -33.08773 -32.02086 -29.96219 -26.77153 -24.80671 -22.22216 -21.57423 -21.25000 -19.98659 -16.49852 -16.41613 -15.98549 -15.03739 -14.66625 -14.22111 -13.78595 -13.26885 -13.12828 -12.93943 -12.72703 -12.34199 -12.11300 -11.85909 -11.64328 -11.11563 -10.82890 -10.68726 -10.54772 -9.94141 -9.77121 -9.21403 -8.47427 -8.15132 -7.33559 -6.02532 -4.04964 1.79335 2.68363 2.98410 3.34488 3.38162 3.41397 4.43158 4.66508 4.92565 5.09904 5.19192 5.30188 5.33060 5.36116 5.47544 5.54785 5.71182 5.86760 5.89985 6.02004 6.23594 6.35648 6.43568 6.64689 7.23759 7.29508 7.41226 7.77361 8.12037 8.37023 8.59219 9.03831 9.59873 11.08640 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.080715 B = 0.004672 C = 0.004609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 346.816411 B = 5991.401936 C = 6073.084194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.027 4.027 3 C -0.211 4.211 4 C -0.217 4.217 5 C 0.006 3.994 6 C -0.040 4.040 7 C 0.064 3.936 8 N -0.690 5.690 9 C 0.194 3.806 10 C -0.516 4.516 11 H 0.063 0.937 12 C 0.056 3.944 13 N -0.898 5.898 14 Si 0.901 3.099 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.276 1.276 18 O -0.173 6.173 19 H 0.077 0.923 20 H 0.075 0.925 21 H 0.085 0.915 22 H 0.144 0.856 23 H 0.146 0.854 24 H 0.090 0.910 25 H 0.088 0.912 26 H 0.067 0.933 27 H 0.023 0.977 28 H 0.329 0.671 29 H -0.013 1.013 30 H 0.028 0.972 31 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.470 9.326 -9.986 17.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.077 4.077 3 C -0.230 4.230 4 C -0.236 4.236 5 C -0.045 4.045 6 C -0.077 4.077 7 C -0.066 4.066 8 N -0.320 5.320 9 C 0.067 3.933 10 C -0.555 4.555 11 H 0.081 0.919 12 C -0.146 4.146 13 N -0.538 5.538 14 Si 0.729 3.271 15 H -0.202 1.202 16 H -0.213 1.213 17 H -0.201 1.201 18 O -0.070 6.070 19 H 0.096 0.904 20 H 0.094 0.906 21 H 0.104 0.896 22 H 0.162 0.838 23 H 0.164 0.836 24 H 0.109 0.891 25 H 0.106 0.894 26 H 0.085 0.915 27 H 0.041 0.959 28 H 0.145 0.855 29 H 0.005 0.995 30 H 0.046 0.954 31 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.932 8.428 -9.837 17.611 hybrid contribution 1.264 0.528 0.451 1.442 sum -10.668 8.956 -9.386 16.796 Atomic orbital electron populations 1.20254 0.85417 1.03883 1.03174 1.22383 0.93953 0.84384 1.07026 1.21520 0.92863 0.99126 1.09515 1.21556 0.98072 0.93996 1.09952 1.22572 0.82979 0.94673 1.04267 1.20206 0.90440 0.97636 0.99448 1.21855 0.96132 0.95241 0.93420 1.60682 1.08189 1.44276 1.18891 1.19562 0.95891 0.94993 0.82852 1.21153 1.13239 1.28358 0.92713 0.91923 1.25001 0.97588 0.96659 0.95342 1.69960 1.41421 1.45066 0.97319 0.86518 0.82547 0.81184 0.76893 1.20244 1.21331 1.20113 1.83977 1.16562 1.34993 1.71456 0.90414 0.90622 0.89610 0.83827 0.83645 0.89150 0.89373 0.91486 0.95883 0.85490 0.99480 0.95352 0.92828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.59 10.42 36.00 0.38 -0.22 16 2 C -0.03 -0.35 7.32 -35.62 -0.26 -0.61 16 3 C -0.21 -2.67 10.81 -39.70 -0.43 -3.10 16 4 C -0.22 -3.01 10.81 -39.70 -0.43 -3.44 16 5 C 0.01 0.09 6.58 -35.62 -0.23 -0.15 16 6 C -0.04 -0.59 6.01 -27.88 -0.17 -0.76 16 7 C 0.06 1.18 5.67 -3.82 -0.02 1.15 16 8 N -0.69 -15.04 6.49 -115.06 -0.75 -15.79 16 9 C 0.19 5.20 5.44 -4.98 -0.03 5.17 16 10 C -0.52 -14.84 9.32 -34.44 -0.32 -15.16 16 11 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 12 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 13 N -0.90 -27.21 13.29 55.43 0.74 -26.48 16 14 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16 15 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 16 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 17 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 18 O -0.17 -2.68 10.65 5.70 0.06 -2.62 16 19 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 20 H 0.07 0.61 8.14 -51.92 -0.42 0.19 16 21 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 22 H 0.14 1.44 8.06 -52.49 -0.42 1.01 16 23 H 0.15 1.77 8.06 -52.48 -0.42 1.35 16 24 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 25 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 26 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 27 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.33 6.65 8.72 -39.29 -0.34 6.31 16 29 H -0.01 -0.36 8.14 -51.93 -0.42 -0.78 16 30 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 273.35 15.07 4.12 4.12 Total: -1.00 -31.60 273.35 -7.00 -38.61 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: -4.54 Total: 0.95 kcal Atomic # 6 Polarization: -13.99 SS G_CDS: -1.61 Total: -15.61 kcal Atomic # 7 Polarization: -42.25 SS G_CDS: -0.01 Total: -42.26 kcal Atomic # 8 Polarization: -2.68 SS G_CDS: 0.06 Total: -2.62 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -31.60 -7.00 -38.61 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259008463.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.794 kcal (2) G-P(sol) polarization free energy of solvation -31.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds