Wall clock time and date at job start Sun Mar 29 2020 21:38:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34518 * 125.78860 * 2 1 4 4 C 1.41378 * 106.84260 * 180.02562 * 3 2 1 5 5 C 1.34519 * 106.84231 * 0.02562 * 4 3 2 6 6 C 1.50696 * 125.78992 * 180.02562 * 5 4 3 7 7 C 1.53002 * 109.46999 * 90.00090 * 6 5 4 8 8 N 1.46906 * 109.47053 * 179.97438 * 7 6 5 9 9 C 1.46895 * 110.99789 * 179.97438 * 8 7 6 10 10 C 1.50704 * 109.47030 * 179.97438 * 9 8 7 11 11 H 1.08001 * 119.99961 * 0.02562 * 10 9 8 12 12 C 1.37876 * 120.00406 * 180.02562 * 10 9 8 13 13 N 1.31520 * 119.99531 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 120.00291 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47158 * 59.99893 * 14 12 10 16 16 H 1.48501 * 109.46994 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.46885 * 299.99904 * 14 12 10 18 18 O 1.34302 * 108.41739 * 0.26112 * 5 4 3 19 19 H 1.09002 * 109.47330 * 90.00264 * 1 2 3 20 20 H 1.09010 * 109.46524 * 209.99673 * 1 2 3 21 21 H 1.08998 * 109.47372 * 329.99493 * 1 2 3 22 22 H 1.08000 * 126.57833 * 0.05043 * 3 2 1 23 23 H 1.08004 * 126.58244 * 180.02562 * 4 3 2 24 24 H 1.09001 * 109.47328 * 330.00015 * 6 5 4 25 25 H 1.09004 * 109.47043 * 209.99825 * 6 5 4 26 26 H 1.08992 * 109.47056 * 59.99641 * 7 6 5 27 27 H 1.09004 * 109.47006 * 299.99757 * 7 6 5 28 28 H 1.00902 * 111.00068 * 56.04103 * 8 7 6 29 29 H 1.08996 * 109.47424 * 299.99656 * 9 8 7 30 30 H 1.09002 * 109.47411 * 60.00282 * 9 8 7 31 31 H 0.96996 * 119.99726 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0912 0.0000 4 6 3.6308 0.6322 -0.0006 5 6 3.5814 -0.7121 -0.0015 6 6 4.7707 -1.6377 -0.0019 7 6 5.1728 -1.9519 1.4406 8 7 6.3317 -2.8547 1.4402 9 6 6.7471 -3.1784 2.8115 10 6 7.9352 -4.1047 2.7710 11 1 8.3413 -4.4209 1.8215 12 6 8.5038 -4.5486 3.9460 13 7 8.0095 -4.1631 5.1023 14 14 9.9768 -5.6961 3.8958 15 1 11.0978 -5.0319 3.1834 16 1 10.3967 -6.0235 5.2821 17 1 9.6074 -6.9448 3.1820 18 8 2.2925 -1.0894 -0.0073 19 1 -0.3634 0.0000 -1.0277 20 1 -0.3633 -0.8901 0.5138 21 1 -0.3634 0.8899 0.5139 22 1 1.9665 2.1204 0.0008 23 1 4.5212 1.2435 -0.0004 24 1 5.6042 -1.1582 -0.5152 25 1 4.5108 -2.5629 -0.5164 26 1 4.3393 -2.4313 1.9538 27 1 5.4326 -1.0267 1.9551 28 1 7.0972 -2.4602 0.9144 29 1 7.0184 -2.2617 3.3350 30 1 5.9246 -3.6659 3.3349 31 1 8.4097 -4.4751 5.9289 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259008463.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:09 Heat of formation + Delta-G solvation = -22.810945 kcal Electronic energy + Delta-G solvation = -12889.291105 eV Core-core repulsion = 10556.893317 eV Total energy + Delta-G solvation = -2332.397787 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -43.53328 -37.63335 -35.05476 -34.10249 -33.54557 -31.23362 -28.54410 -26.17696 -23.88347 -23.06068 -22.63251 -21.04418 -18.59269 -17.52305 -17.17303 -16.82005 -16.39871 -15.54282 -15.22933 -14.60887 -14.38182 -13.92407 -13.83347 -13.73532 -13.61996 -13.35444 -12.89432 -12.66274 -12.63405 -12.51158 -12.13450 -11.92098 -11.35742 -10.81590 -10.66566 -9.21973 -9.18096 -8.23361 -6.35591 0.74162 1.42167 1.46313 1.54331 1.66348 1.99665 2.40520 3.09974 3.46460 3.90152 3.95657 4.11726 4.16183 4.29523 4.52706 4.56494 4.72053 4.75679 4.85714 4.95557 4.98785 5.05770 5.14897 5.21022 5.33990 5.59344 5.66689 5.98249 6.24933 6.37793 6.68277 6.86769 7.35658 8.88411 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.080715 B = 0.004672 C = 0.004609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 346.816411 B = 5991.401936 C = 6073.084194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.033 4.033 3 C -0.223 4.223 4 C -0.216 4.216 5 C -0.026 4.026 6 C -0.025 4.025 7 C 0.068 3.932 8 N -0.686 5.686 9 C 0.206 3.794 10 C -0.539 4.539 11 H 0.069 0.931 12 C 0.000 4.000 13 N -0.936 5.936 14 Si 0.977 3.023 15 H -0.264 1.264 16 H -0.283 1.283 17 H -0.268 1.268 18 O -0.197 6.197 19 H 0.096 0.904 20 H 0.076 0.924 21 H 0.108 0.892 22 H 0.171 0.829 23 H 0.160 0.840 24 H 0.112 0.888 25 H 0.087 0.913 26 H 0.048 0.952 27 H 0.021 0.979 28 H 0.341 0.659 29 H -0.037 1.037 30 H -0.003 1.003 31 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.375 9.739 -11.127 18.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.082 4.082 3 C -0.242 4.242 4 C -0.235 4.235 5 C -0.076 4.076 6 C -0.062 4.062 7 C -0.061 4.061 8 N -0.317 5.317 9 C 0.078 3.922 10 C -0.577 4.577 11 H 0.087 0.913 12 C -0.198 4.198 13 N -0.576 5.576 14 Si 0.801 3.199 15 H -0.188 1.188 16 H -0.208 1.208 17 H -0.192 1.192 18 O -0.095 6.095 19 H 0.114 0.886 20 H 0.095 0.905 21 H 0.127 0.873 22 H 0.188 0.812 23 H 0.178 0.822 24 H 0.130 0.870 25 H 0.105 0.895 26 H 0.067 0.933 27 H 0.039 0.961 28 H 0.158 0.842 29 H -0.020 1.020 30 H 0.015 0.985 31 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.845 8.857 -11.007 18.436 hybrid contribution 1.124 0.476 0.802 1.461 sum -10.720 9.333 -10.206 17.498 Atomic orbital electron populations 1.20479 0.82460 1.05074 1.04710 1.23300 0.95728 0.83831 1.05389 1.21904 0.92250 1.00487 1.09539 1.21900 0.99401 0.93730 1.08448 1.22561 0.83032 0.95179 1.06846 1.20000 0.91492 0.98096 0.96607 1.21830 0.94089 0.94080 0.96133 1.60521 1.09349 1.45894 1.15985 1.19226 0.94485 0.93485 0.84964 1.21533 1.13949 1.28947 0.93262 0.91303 1.26016 1.00819 0.98258 0.94748 1.70099 1.43063 1.46309 0.98142 0.85317 0.78529 0.78825 0.77208 1.18837 1.20821 1.19244 1.83960 1.16993 1.36490 1.72017 0.88587 0.90502 0.87322 0.81161 0.82227 0.86977 0.89483 0.93314 0.96075 0.84160 1.01953 0.98509 0.92552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.03 10.42 71.24 0.74 -0.29 16 2 C -0.03 -0.80 7.32 24.83 0.18 -0.62 16 3 C -0.22 -5.22 10.81 22.19 0.24 -4.98 16 4 C -0.22 -5.71 10.81 22.19 0.24 -5.47 16 5 C -0.03 -0.78 6.58 24.83 0.16 -0.62 16 6 C -0.02 -0.72 6.01 29.85 0.18 -0.54 16 7 C 0.07 2.57 5.67 86.30 0.49 3.06 16 8 N -0.69 -30.25 6.49 -517.93 -3.36 -33.61 16 9 C 0.21 11.43 5.44 85.56 0.47 11.89 16 10 C -0.54 -31.23 9.32 25.60 0.24 -30.99 16 11 H 0.07 3.82 7.81 -2.91 -0.02 3.79 16 12 C 0.00 -0.02 5.46 84.65 0.46 0.45 16 13 N -0.94 -57.53 13.29 21.45 0.28 -57.25 16 14 Si 0.98 44.49 29.54 68.60 2.03 46.51 16 15 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 16 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 17 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 18 O -0.20 -6.03 10.65 -2.51 -0.03 -6.06 16 19 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 20 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 21 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 22 H 0.17 2.92 8.06 -2.91 -0.02 2.89 16 23 H 0.16 3.62 8.06 -2.91 -0.02 3.59 16 24 H 0.11 2.77 8.14 -2.39 -0.02 2.75 16 25 H 0.09 2.56 8.14 -2.38 -0.02 2.54 16 26 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 27 H 0.02 0.80 8.14 -2.38 -0.02 0.78 16 28 H 0.34 13.66 8.72 -89.69 -0.78 12.87 16 29 H -0.04 -2.20 8.14 -2.39 -0.02 -2.22 16 30 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 31 H 0.27 15.30 8.31 -92.71 -0.77 14.52 16 Total: -1.00 -68.28 273.35 2.65 -65.63 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: 0.32 Total: 12.89 kcal Atomic # 6 Polarization: -31.51 SS G_CDS: 3.40 Total: -28.11 kcal Atomic # 7 Polarization: -87.78 SS G_CDS: -3.08 Total: -90.86 kcal Atomic # 8 Polarization: -6.03 SS G_CDS: -0.03 Total: -6.06 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.51 kcal Total: -68.28 2.65 -65.63 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259008463.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.819 kcal (2) G-P(sol) polarization free energy of solvation -68.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds