Wall clock time and date at job start Sun Mar 29 2020 21:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35343 * 127.24473 * 2 1 4 4 N 1.35053 * 107.23775 * 179.88335 * 3 2 1 5 5 H 0.96997 * 124.88175 * 180.15526 * 4 3 2 6 6 N 1.28465 * 110.24179 * 0.39484 * 4 3 2 7 7 C 1.31864 * 110.06137 * 359.75606 * 6 4 3 8 8 C 1.47605 * 126.52209 * 180.02562 * 7 6 4 9 9 O 1.21611 * 119.99911 * 174.22210 * 8 7 6 10 10 N 1.34771 * 120.00248 * 354.21812 * 8 7 6 11 11 C 1.46503 * 119.99894 * 185.57132 * 10 8 7 12 12 C 1.36912 * 120.00156 * 5.56979 * 10 8 7 13 13 H 1.08002 * 119.99594 * 353.73589 * 12 10 8 14 14 C 1.39022 * 120.00390 * 173.74057 * 12 10 8 15 15 N 1.31388 * 119.99688 * 5.10270 * 14 12 10 16 16 Si 1.86796 * 120.00246 * 185.10452 * 14 12 10 17 17 H 1.48507 * 109.47072 * 59.99640 * 16 14 12 18 18 H 1.48500 * 109.47386 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47136 * 300.00276 * 16 14 12 20 20 H 1.09002 * 109.46841 * 269.68627 * 1 2 3 21 21 H 1.09000 * 109.46827 * 149.68772 * 1 2 3 22 22 H 1.09000 * 109.47167 * 29.68487 * 1 2 3 23 23 H 1.07997 * 126.38600 * 0.02562 * 3 2 1 24 24 H 1.08989 * 109.47535 * 4.67847 * 11 10 8 25 25 H 1.09001 * 109.46966 * 124.68170 * 11 10 8 26 26 H 1.09008 * 109.46809 * 244.67432 * 11 10 8 27 27 H 0.96994 * 119.99486 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3262 1.0774 0.0000 4 7 3.5952 0.6153 0.0026 5 1 4.3887 1.1732 0.0054 6 7 3.6005 -0.6693 -0.0041 7 6 2.3637 -1.1267 -0.0061 8 6 1.9513 -2.5439 -0.0129 9 8 0.7753 -2.8355 0.0919 10 7 2.8779 -3.5149 -0.1353 11 6 2.4609 -4.9133 -0.2648 12 6 4.2090 -3.1944 -0.1386 13 1 4.5150 -2.1586 -0.1452 14 6 5.1667 -4.2021 -0.1335 15 7 4.7976 -5.4596 -0.2267 16 14 6.9783 -3.7683 0.0060 17 1 7.2165 -3.0405 1.2784 18 1 7.7881 -5.0130 -0.0109 19 1 7.3704 -2.9065 -1.1380 20 1 -0.3633 -0.0056 1.0277 21 1 -0.3633 -0.8872 -0.5187 22 1 -0.3633 0.8928 -0.5089 23 1 2.0218 2.1136 0.0004 24 1 1.3739 -4.9642 -0.3252 25 1 2.8954 -5.3398 -1.1689 26 1 2.8034 -5.4765 0.6035 27 1 5.4658 -6.1626 -0.2235 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259574528.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:20 Heat of formation + Delta-G solvation = 63.084783 kcal Electronic energy + Delta-G solvation = -13819.647877 eV Core-core repulsion = 11387.434464 eV Total energy + Delta-G solvation = -2432.213413 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.090 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.87696 -37.98221 -34.74076 -32.32235 -31.44053 -30.48965 -26.60520 -26.31210 -24.66054 -22.05168 -19.96539 -18.89946 -17.87882 -16.56482 -15.64828 -15.02183 -14.32392 -13.99966 -13.56360 -13.18907 -12.58271 -12.39601 -12.32846 -11.63336 -11.48491 -11.42684 -10.91977 -10.87544 -10.41205 -10.37944 -9.17363 -8.95990 -8.60477 -8.44537 -8.20034 -7.82042 -6.20948 -3.70889 2.48608 2.79840 3.22238 3.23817 3.26758 3.54232 4.14972 4.53842 4.86275 5.30347 5.33942 5.48835 5.78244 6.19160 6.23930 6.30313 6.55421 6.81486 6.90321 7.22370 7.32945 7.52226 7.54281 7.78174 7.92237 8.57584 8.78617 9.19232 9.66105 10.02447 10.72665 Molecular weight = 209.09amu Principal moments of inertia in cm(-1) A = 0.035549 B = 0.012637 C = 0.009400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.462905 B = 2215.168339 C = 2978.022590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.164 4.164 3 C -0.037 4.037 4 N -0.409 5.409 5 H 0.436 0.564 6 N -0.252 5.252 7 C 0.035 3.965 8 C 0.506 3.494 9 O -0.611 6.611 10 N -0.421 5.421 11 C 0.121 3.879 12 C -0.325 4.325 13 H 0.148 0.852 14 C 0.024 3.976 15 N -0.878 5.878 16 Si 0.932 3.068 17 H -0.274 1.274 18 H -0.285 1.285 19 H -0.274 1.274 20 H 0.059 0.941 21 H 0.081 0.919 22 H 0.050 0.950 23 H 0.170 0.830 24 H 0.036 0.964 25 H 0.070 0.930 26 H 0.064 0.936 27 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.449 10.054 -0.099 10.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.175 4.175 3 C -0.181 4.181 4 N -0.120 5.120 5 H 0.278 0.722 6 N -0.085 5.085 7 C -0.126 4.126 8 C 0.294 3.706 9 O -0.499 6.499 10 N -0.136 5.136 11 C -0.022 4.022 12 C -0.455 4.455 13 H 0.165 0.835 14 C -0.179 4.179 15 N -0.519 5.519 16 Si 0.759 3.241 17 H -0.199 1.199 18 H -0.210 1.210 19 H -0.199 1.199 20 H 0.078 0.922 21 H 0.099 0.901 22 H 0.069 0.931 23 H 0.188 0.812 24 H 0.055 0.945 25 H 0.089 0.911 26 H 0.082 0.918 27 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.172 9.312 -0.060 9.314 hybrid contribution 0.838 0.707 0.062 1.098 sum 1.010 10.019 0.002 10.070 Atomic orbital electron populations 1.20039 0.88908 1.02082 1.01661 1.20328 0.97143 0.90967 1.09086 1.22476 0.85037 0.99686 1.10882 1.43544 1.07652 1.05507 1.55256 0.72156 1.73909 1.23032 0.91568 1.20015 1.22141 0.88305 0.95747 1.06441 1.16601 0.85291 0.82558 0.86103 1.90579 1.17309 1.82166 1.59810 1.43749 1.06183 1.05948 1.57758 1.21644 0.95866 0.81312 1.03372 1.21258 0.80246 0.97008 1.46976 0.83522 1.25456 1.00811 0.94844 0.96746 1.70243 1.33980 0.99331 1.48354 0.85910 0.81623 0.77598 0.78981 1.19902 1.21017 1.19921 0.92221 0.90065 0.93129 0.81229 0.94534 0.91135 0.91787 0.92355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.17 9.88 36.01 0.36 -0.81 15 2 C -0.16 -3.16 6.25 -104.39 -0.65 -3.81 15 3 C -0.04 -0.56 11.97 -17.17 -0.21 -0.76 15 4 N -0.41 -6.52 6.83 30.47 0.21 -6.32 15 5 H 0.44 4.94 8.96 -190.44 -1.71 3.24 15 6 N -0.25 -5.44 8.66 33.41 0.29 -5.15 15 7 C 0.03 0.82 6.87 -82.77 -0.57 0.25 15 8 C 0.51 13.66 7.63 -12.44 -0.09 13.57 15 9 O -0.61 -17.07 14.55 5.27 0.08 -16.99 15 10 N -0.42 -11.70 3.02 -123.36 -0.37 -12.07 15 11 C 0.12 3.19 8.85 59.85 0.53 3.72 15 12 C -0.32 -8.91 9.35 -14.99 -0.14 -9.05 15 13 H 0.15 3.88 4.12 -68.05 -0.28 3.60 15 14 C 0.02 0.65 5.46 -17.45 -0.10 0.55 15 15 N -0.88 -23.77 9.44 55.50 0.52 -23.24 15 16 Si 0.93 20.64 29.56 -169.99 -5.02 15.61 15 17 H -0.27 -6.00 7.11 56.52 0.40 -5.59 15 18 H -0.28 -6.21 7.11 56.52 0.40 -5.81 15 19 H -0.27 -5.94 7.11 56.52 0.40 -5.54 15 20 H 0.06 0.96 8.14 -51.93 -0.42 0.54 15 21 H 0.08 1.57 6.85 -51.93 -0.36 1.22 15 22 H 0.05 0.67 8.14 -51.93 -0.42 0.25 15 23 H 0.17 1.73 8.06 -52.49 -0.42 1.31 15 24 H 0.04 0.93 6.94 -51.94 -0.36 0.57 15 25 H 0.07 1.89 6.98 -51.93 -0.36 1.53 15 26 H 0.06 1.73 7.11 -51.92 -0.37 1.36 15 27 H 0.27 6.80 8.31 -40.82 -0.34 6.46 15 LS Contribution 233.25 15.07 3.51 3.51 Total: -1.00 -32.38 233.25 -5.49 -37.87 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -3.84 Total: 3.12 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: -0.87 Total: 3.66 kcal Atomic # 7 Polarization: -47.43 SS G_CDS: 0.65 Total: -46.78 kcal Atomic # 8 Polarization: -17.07 SS G_CDS: 0.08 Total: -16.99 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 3.51 Total: 3.51 kcal Total: -32.38 -5.49 -37.87 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259574528.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.957 kcal (2) G-P(sol) polarization free energy of solvation -32.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds