Wall clock time and date at job start Sun Mar 29 2020 21:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35343 * 127.24473 * 2 1 4 4 N 1.35053 * 107.23775 * 179.88335 * 3 2 1 5 5 H 0.96997 * 124.88175 * 180.15526 * 4 3 2 6 6 N 1.28465 * 110.24179 * 0.39484 * 4 3 2 7 7 C 1.31864 * 110.06137 * 359.75606 * 6 4 3 8 8 C 1.47605 * 126.52209 * 180.02562 * 7 6 4 9 9 O 1.21611 * 119.99911 * 174.22210 * 8 7 6 10 10 N 1.34771 * 120.00248 * 354.21812 * 8 7 6 11 11 C 1.46503 * 119.99894 * 185.57132 * 10 8 7 12 12 C 1.36912 * 120.00156 * 5.56979 * 10 8 7 13 13 H 1.08002 * 119.99594 * 353.73589 * 12 10 8 14 14 C 1.39022 * 120.00390 * 173.74057 * 12 10 8 15 15 N 1.31388 * 119.99688 * 5.10270 * 14 12 10 16 16 Si 1.86796 * 120.00246 * 185.10452 * 14 12 10 17 17 H 1.48507 * 109.47072 * 59.99640 * 16 14 12 18 18 H 1.48500 * 109.47386 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47136 * 300.00276 * 16 14 12 20 20 H 1.09002 * 109.46841 * 269.68627 * 1 2 3 21 21 H 1.09000 * 109.46827 * 149.68772 * 1 2 3 22 22 H 1.09000 * 109.47167 * 29.68487 * 1 2 3 23 23 H 1.07997 * 126.38600 * 0.02562 * 3 2 1 24 24 H 1.08989 * 109.47535 * 4.67847 * 11 10 8 25 25 H 1.09001 * 109.46966 * 124.68170 * 11 10 8 26 26 H 1.09008 * 109.46809 * 244.67432 * 11 10 8 27 27 H 0.96994 * 119.99486 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3262 1.0774 0.0000 4 7 3.5952 0.6153 0.0026 5 1 4.3887 1.1732 0.0054 6 7 3.6005 -0.6693 -0.0041 7 6 2.3637 -1.1267 -0.0061 8 6 1.9513 -2.5439 -0.0129 9 8 0.7753 -2.8355 0.0919 10 7 2.8779 -3.5149 -0.1353 11 6 2.4609 -4.9133 -0.2648 12 6 4.2090 -3.1944 -0.1386 13 1 4.5150 -2.1586 -0.1452 14 6 5.1667 -4.2021 -0.1335 15 7 4.7976 -5.4596 -0.2267 16 14 6.9783 -3.7683 0.0060 17 1 7.2165 -3.0405 1.2784 18 1 7.7881 -5.0130 -0.0109 19 1 7.3704 -2.9065 -1.1380 20 1 -0.3633 -0.0056 1.0277 21 1 -0.3633 -0.8872 -0.5187 22 1 -0.3633 0.8928 -0.5089 23 1 2.0218 2.1136 0.0004 24 1 1.3739 -4.9642 -0.3252 25 1 2.8954 -5.3398 -1.1689 26 1 2.8034 -5.4765 0.6035 27 1 5.4658 -6.1626 -0.2235 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259574528.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:20 Heat of formation + Delta-G solvation = 39.874937 kcal Electronic energy + Delta-G solvation = -13820.654331 eV Core-core repulsion = 11387.434464 eV Total energy + Delta-G solvation = -2433.219867 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.090 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -43.35460 -40.01671 -36.78670 -33.76279 -33.42617 -32.09190 -28.45648 -27.87881 -26.62222 -23.82178 -21.40482 -20.85467 -19.40893 -18.26940 -17.54577 -16.61089 -16.12470 -16.05605 -15.51261 -14.82491 -14.09799 -13.92547 -13.69942 -13.52435 -13.44095 -13.09903 -12.72825 -12.69329 -12.26513 -12.11980 -11.06596 -10.86567 -10.44941 -10.16920 -9.89060 -9.58372 -8.20415 -5.79186 0.84547 1.37553 1.43118 1.52190 1.56028 2.23593 2.35745 2.60770 3.07295 3.28017 3.90279 4.16374 4.45089 4.63376 4.79549 4.88571 5.01318 5.14821 5.17460 5.36829 5.39597 5.61314 5.73101 5.90292 6.39830 6.68525 7.05979 7.26863 7.65910 7.97394 8.74779 Molecular weight = 209.09amu Principal moments of inertia in cm(-1) A = 0.035549 B = 0.012637 C = 0.009400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.462905 B = 2215.168339 C = 2978.022590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.194 4.194 3 C 0.008 3.992 4 N -0.383 5.383 5 H 0.459 0.541 6 N -0.279 5.279 7 C -0.012 4.012 8 C 0.496 3.504 9 O -0.634 6.634 10 N -0.443 5.443 11 C 0.136 3.864 12 C -0.354 4.354 13 H 0.158 0.842 14 C -0.023 4.023 15 N -0.907 5.907 16 Si 1.002 2.998 17 H -0.268 1.268 18 H -0.281 1.281 19 H -0.263 1.263 20 H 0.061 0.939 21 H 0.044 0.956 22 H 0.093 0.907 23 H 0.234 0.766 24 H 0.035 0.965 25 H 0.060 0.940 26 H 0.051 0.949 27 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.623 13.296 -0.042 13.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.204 4.204 3 C -0.137 4.137 4 N -0.098 5.098 5 H 0.306 0.694 6 N -0.115 5.115 7 C -0.171 4.171 8 C 0.285 3.715 9 O -0.523 6.523 10 N -0.158 5.158 11 C -0.007 4.007 12 C -0.483 4.483 13 H 0.175 0.825 14 C -0.223 4.223 15 N -0.548 5.548 16 Si 0.825 3.175 17 H -0.193 1.193 18 H -0.206 1.206 19 H -0.188 1.188 20 H 0.080 0.920 21 H 0.063 0.937 22 H 0.112 0.888 23 H 0.251 0.749 24 H 0.054 0.946 25 H 0.079 0.921 26 H 0.069 0.931 27 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.258 12.557 -0.006 12.620 hybrid contribution 0.434 -0.158 0.046 0.464 sum 1.692 12.398 0.039 12.513 Atomic orbital electron populations 1.20011 0.87870 1.02412 1.01890 1.20730 0.98356 0.90745 1.10587 1.23227 0.83185 1.01221 1.06099 1.43614 1.09496 1.04116 1.52544 0.69381 1.73629 1.22622 0.94294 1.20919 1.21863 0.90324 0.94811 1.10067 1.17296 0.84968 0.84318 0.84892 1.90529 1.18178 1.83216 1.60421 1.44009 1.06892 1.06153 1.58780 1.21396 0.95450 0.81626 1.02226 1.21708 0.80272 0.98052 1.48252 0.82546 1.26433 1.05211 0.94654 0.96004 1.70359 1.35337 1.00153 1.48985 0.84860 0.75855 0.77547 0.79270 1.19273 1.20583 1.18808 0.91996 0.93668 0.88843 0.74940 0.94627 0.92117 0.93058 0.92227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.05 9.88 71.24 0.70 -1.34 15 2 C -0.19 -6.98 6.25 -19.72 -0.12 -7.10 15 3 C 0.01 0.19 11.97 83.53 1.00 1.19 15 4 N -0.38 -10.69 6.83 -57.51 -0.39 -11.08 15 5 H 0.46 8.17 8.96 -220.00 -1.97 6.20 15 6 N -0.28 -11.62 8.66 -48.20 -0.42 -12.04 15 7 C -0.01 -0.54 6.87 42.43 0.29 -0.25 15 8 C 0.50 27.61 7.63 86.72 0.66 28.27 15 9 O -0.63 -36.88 14.55 -4.06 -0.06 -36.94 15 10 N -0.44 -25.49 3.02 -662.44 -2.00 -27.49 15 11 C 0.14 7.56 8.85 127.77 1.13 8.69 15 12 C -0.35 -19.77 9.35 84.09 0.79 -18.98 15 13 H 0.16 8.29 4.12 -23.04 -0.09 8.19 15 14 C -0.02 -1.25 5.46 84.95 0.46 -0.79 15 15 N -0.91 -50.30 9.44 21.68 0.20 -50.10 15 16 Si 1.00 42.06 29.56 68.60 2.03 44.09 15 17 H -0.27 -10.90 7.11 99.48 0.71 -10.19 15 18 H -0.28 -11.47 7.11 99.48 0.71 -10.76 15 19 H -0.26 -10.53 7.11 99.48 0.71 -9.82 15 20 H 0.06 1.90 8.14 -2.39 -0.02 1.88 15 21 H 0.04 1.76 6.85 -2.39 -0.02 1.74 15 22 H 0.09 2.12 8.14 -2.39 -0.02 2.10 15 23 H 0.23 2.81 8.06 -2.91 -0.02 2.79 15 24 H 0.04 1.91 6.94 -2.39 -0.02 1.89 15 25 H 0.06 3.42 6.98 -2.39 -0.02 3.40 15 26 H 0.05 2.91 7.11 -2.38 -0.02 2.90 15 27 H 0.27 13.96 8.31 -92.71 -0.77 13.19 15 Total: -1.00 -73.80 233.25 3.43 -70.36 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: -0.85 Total: 13.50 kcal Atomic # 6 Polarization: 4.78 SS G_CDS: 4.91 Total: 9.70 kcal Atomic # 7 Polarization: -98.11 SS G_CDS: -2.61 Total: -100.71 kcal Atomic # 8 Polarization: -36.88 SS G_CDS: -0.06 Total: -36.94 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.09 kcal Total: -73.80 3.43 -70.36 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259574528.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.239 kcal (2) G-P(sol) polarization free energy of solvation -73.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds