Wall clock time and date at job start Sun Mar 29 2020 21:27:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.35049 * 126.37991 * 2 1 4 4 H 0.97000 * 124.87896 * 0.07034 * 3 2 1 5 5 N 1.28466 * 110.24338 * 180.30334 * 3 2 1 6 6 C 1.31864 * 110.06175 * 359.74751 * 5 3 2 7 7 C 1.47602 * 126.52414 * 179.97438 * 6 5 3 8 8 O 1.21613 * 120.00259 * 180.02562 * 7 6 5 9 9 N 1.34777 * 120.00058 * 0.03304 * 7 6 5 10 10 C 1.36908 * 119.99964 * 179.97438 * 9 7 6 11 11 H 1.08001 * 120.00274 * 0.02562 * 10 9 7 12 12 C 1.39031 * 120.00069 * 179.97438 * 10 9 7 13 13 N 1.31376 * 119.99720 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 120.00057 * 180.02562 * 12 10 9 15 15 H 1.48496 * 109.47143 * 59.99817 * 14 12 10 16 16 H 1.48498 * 109.46822 * 179.97438 * 14 12 10 17 17 H 1.48502 * 109.47173 * 299.99682 * 14 12 10 18 18 C 1.35350 * 126.38175 * 179.88085 * 2 1 3 19 19 C 1.50703 * 127.24773 * 359.97438 * 18 2 1 20 20 H 1.09000 * 109.46483 * 270.11663 * 1 2 3 21 21 H 1.08992 * 109.47121 * 30.11998 * 1 2 3 22 22 H 1.09000 * 109.46959 * 150.12085 * 1 2 3 23 23 H 0.97000 * 120.00283 * 359.97438 * 9 7 6 24 24 H 0.97004 * 119.99956 * 180.02562 * 13 12 10 25 25 H 1.09002 * 109.47152 * 269.70614 * 19 18 2 26 26 H 1.09001 * 109.46980 * 149.70714 * 19 18 2 27 27 H 1.09004 * 109.47113 * 29.70695 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3080 1.0873 0.0000 4 1 1.9964 2.0059 0.0010 5 7 3.5420 0.7302 -0.0064 6 6 3.6323 -0.5853 -0.0054 7 6 4.8758 -1.3805 -0.0119 8 8 4.8207 -2.5954 -0.0107 9 7 6.0723 -0.7602 -0.0190 10 6 7.2257 -1.4978 -0.0245 11 1 7.1768 -2.5767 -0.0236 12 6 8.4600 -0.8580 -0.0324 13 7 8.5196 0.4544 -0.0351 14 14 10.0337 -1.8644 -0.0406 15 1 10.0665 -2.7221 -1.2524 16 1 11.2050 -0.9516 -0.0490 17 1 10.0808 -2.7196 1.1725 18 6 2.3098 -1.0897 0.0023 19 6 1.8851 -2.5356 0.0058 20 1 -0.3632 0.0021 1.0277 21 1 -0.3633 0.8888 -0.5157 22 1 -0.3633 -0.8911 -0.5120 23 1 6.1164 0.2088 -0.0203 24 1 9.3807 0.9008 -0.0410 25 1 1.7881 -2.8833 1.0343 26 1 2.6339 -3.1355 -0.5114 27 1 0.9260 -2.6338 -0.5029 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259601258.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:23 Heat of formation + Delta-G solvation = 22.454140 kcal Electronic energy + Delta-G solvation = -13302.498660 eV Core-core repulsion = 10868.523371 eV Total energy + Delta-G solvation = -2433.975290 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.090 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -42.11578 -37.73332 -34.00615 -33.04980 -31.91429 -31.07305 -28.05700 -25.68300 -25.28877 -22.63898 -19.47583 -18.86071 -17.81654 -17.05327 -15.69338 -15.41426 -14.55989 -13.89536 -13.55075 -13.26097 -12.88593 -12.70919 -12.45449 -12.34319 -12.01885 -11.51630 -11.48114 -11.05123 -10.41683 -10.27565 -10.05756 -9.51246 -8.66597 -8.47771 -8.21594 -7.94025 -6.41748 -3.77900 2.27280 2.65958 3.27403 3.27862 3.31186 3.34737 4.18516 4.48235 4.80191 5.08224 5.10649 5.41339 5.44072 5.48086 5.68394 5.80975 6.15525 6.23423 6.28672 6.54932 6.72262 7.11816 7.47525 7.54908 8.07563 8.42579 8.68755 9.17796 9.59705 10.12122 10.75126 Molecular weight = 209.09amu Principal moments of inertia in cm(-1) A = 0.063168 B = 0.007720 C = 0.006914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 443.153547 B = 3626.006087 C = 4048.706029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.009 4.009 3 N -0.396 5.396 4 H 0.437 0.563 5 N -0.276 5.276 6 C 0.027 3.973 7 C 0.509 3.491 8 O -0.590 6.590 9 N -0.536 5.536 10 C -0.299 4.299 11 H 0.107 0.893 12 C 0.024 3.976 13 N -0.890 5.890 14 Si 0.935 3.065 15 H -0.272 1.272 16 H -0.284 1.284 17 H -0.272 1.272 18 C -0.156 4.156 19 C -0.072 4.072 20 H 0.072 0.928 21 H 0.064 0.936 22 H 0.081 0.919 23 H 0.400 0.600 24 H 0.274 0.726 25 H 0.060 0.940 26 H 0.085 0.915 27 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.900 2.105 0.016 13.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.134 4.134 3 N -0.109 5.109 4 H 0.280 0.720 5 N -0.110 5.110 6 C -0.135 4.135 7 C 0.294 3.706 8 O -0.474 6.474 9 N -0.170 5.170 10 C -0.429 4.429 11 H 0.125 0.875 12 C -0.179 4.179 13 N -0.530 5.530 14 Si 0.761 3.239 15 H -0.197 1.197 16 H -0.209 1.209 17 H -0.197 1.197 18 C -0.167 4.167 19 C -0.129 4.129 20 H 0.091 0.909 21 H 0.083 0.917 22 H 0.100 0.900 23 H 0.235 0.765 24 H 0.084 0.916 25 H 0.079 0.921 26 H 0.103 0.897 27 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.073 2.373 0.011 12.304 hybrid contribution 0.212 0.198 0.019 0.291 sum -11.861 2.571 0.030 12.137 Atomic orbital electron populations 1.20239 0.87360 1.03243 1.02672 1.21071 0.94683 0.87496 1.10163 1.43115 1.03282 1.08737 1.55718 0.72014 1.73684 1.00680 1.15655 1.20942 1.22445 0.95850 0.89017 1.06218 1.16493 0.81397 0.86542 0.86190 1.90576 1.86097 1.12693 1.58081 1.41810 1.04123 1.10011 1.61065 1.19769 0.82582 0.93174 1.47372 0.87523 1.25375 0.99730 0.95877 0.96946 1.69634 1.27002 1.07604 1.48735 0.85861 0.79862 0.78970 0.79202 1.19720 1.20909 1.19714 1.20087 0.91188 0.96219 1.09184 1.20103 1.00537 0.90497 1.01786 0.90907 0.91709 0.89982 0.76533 0.91594 0.92096 0.89658 0.92996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.72 10.26 36.00 0.37 -0.35 15 2 C -0.01 -0.13 7.23 -82.21 -0.59 -0.72 15 3 N -0.40 -6.05 6.83 33.50 0.23 -5.82 15 4 H 0.44 4.70 8.96 -190.44 -1.71 2.99 15 5 N -0.28 -5.61 11.92 33.41 0.40 -5.22 15 6 C 0.03 0.60 7.13 -82.77 -0.59 0.01 15 7 C 0.51 13.60 7.77 -12.44 -0.10 13.50 15 8 O -0.59 -16.85 14.69 5.27 0.08 -16.77 15 9 N -0.54 -14.96 5.28 -11.90 -0.06 -15.02 15 10 C -0.30 -8.66 9.68 -14.99 -0.15 -8.80 15 11 H 0.11 3.16 7.15 -52.49 -0.38 2.78 15 12 C 0.02 0.66 5.50 -17.45 -0.10 0.56 15 13 N -0.89 -25.04 13.05 55.50 0.72 -24.32 15 14 Si 0.93 21.29 29.55 -169.99 -5.02 16.27 15 15 H -0.27 -6.12 7.11 56.52 0.40 -5.72 15 16 H -0.28 -6.28 7.11 56.52 0.40 -5.88 15 17 H -0.27 -6.12 7.11 56.52 0.40 -5.72 15 18 C -0.16 -2.94 6.25 -104.39 -0.65 -3.59 15 19 C -0.07 -1.19 9.74 36.01 0.35 -0.84 15 20 H 0.07 0.60 8.14 -51.93 -0.42 0.18 15 21 H 0.06 0.47 8.14 -51.93 -0.42 0.05 15 22 H 0.08 0.71 7.30 -51.93 -0.38 0.33 15 23 H 0.40 11.07 7.62 -40.82 -0.31 10.76 15 24 H 0.27 7.22 8.31 -40.82 -0.34 6.89 15 25 H 0.06 0.97 8.14 -51.93 -0.42 0.54 15 26 H 0.08 1.65 6.72 -51.93 -0.35 1.30 15 27 H 0.05 0.67 7.30 -51.93 -0.38 0.29 15 LS Contribution 243.98 15.07 3.68 3.68 Total: -1.00 -33.30 243.98 -5.34 -38.64 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -3.90 Total: 8.79 kcal Atomic # 6 Polarization: 1.22 SS G_CDS: -1.45 Total: -0.23 kcal Atomic # 7 Polarization: -51.66 SS G_CDS: 1.29 Total: -50.37 kcal Atomic # 8 Polarization: -16.85 SS G_CDS: 0.08 Total: -16.77 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -33.30 -5.34 -38.64 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259601258.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.094 kcal (2) G-P(sol) polarization free energy of solvation -33.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds