Wall clock time and date at job start Sun Mar 29 2020 21:27:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.35049 * 126.37991 * 2 1 4 4 H 0.97000 * 124.87896 * 0.07034 * 3 2 1 5 5 N 1.28466 * 110.24338 * 180.30334 * 3 2 1 6 6 C 1.31864 * 110.06175 * 359.74751 * 5 3 2 7 7 C 1.47602 * 126.52414 * 179.97438 * 6 5 3 8 8 O 1.21613 * 120.00259 * 180.02562 * 7 6 5 9 9 N 1.34777 * 120.00058 * 0.03304 * 7 6 5 10 10 C 1.36908 * 119.99964 * 179.97438 * 9 7 6 11 11 H 1.08001 * 120.00274 * 0.02562 * 10 9 7 12 12 C 1.39031 * 120.00069 * 179.97438 * 10 9 7 13 13 N 1.31376 * 119.99720 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 120.00057 * 180.02562 * 12 10 9 15 15 H 1.48496 * 109.47143 * 59.99817 * 14 12 10 16 16 H 1.48498 * 109.46822 * 179.97438 * 14 12 10 17 17 H 1.48502 * 109.47173 * 299.99682 * 14 12 10 18 18 C 1.35350 * 126.38175 * 179.88085 * 2 1 3 19 19 C 1.50703 * 127.24773 * 359.97438 * 18 2 1 20 20 H 1.09000 * 109.46483 * 270.11663 * 1 2 3 21 21 H 1.08992 * 109.47121 * 30.11998 * 1 2 3 22 22 H 1.09000 * 109.46959 * 150.12085 * 1 2 3 23 23 H 0.97000 * 120.00283 * 359.97438 * 9 7 6 24 24 H 0.97004 * 119.99956 * 180.02562 * 13 12 10 25 25 H 1.09002 * 109.47152 * 269.70614 * 19 18 2 26 26 H 1.09001 * 109.46980 * 149.70714 * 19 18 2 27 27 H 1.09004 * 109.47113 * 29.70695 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3080 1.0873 0.0000 4 1 1.9964 2.0059 0.0010 5 7 3.5420 0.7302 -0.0064 6 6 3.6323 -0.5853 -0.0054 7 6 4.8758 -1.3805 -0.0119 8 8 4.8207 -2.5954 -0.0107 9 7 6.0723 -0.7602 -0.0190 10 6 7.2257 -1.4978 -0.0245 11 1 7.1768 -2.5767 -0.0236 12 6 8.4600 -0.8580 -0.0324 13 7 8.5196 0.4544 -0.0351 14 14 10.0337 -1.8644 -0.0406 15 1 10.0665 -2.7221 -1.2524 16 1 11.2050 -0.9516 -0.0490 17 1 10.0808 -2.7196 1.1725 18 6 2.3098 -1.0897 0.0023 19 6 1.8851 -2.5356 0.0058 20 1 -0.3632 0.0021 1.0277 21 1 -0.3633 0.8888 -0.5157 22 1 -0.3633 -0.8911 -0.5120 23 1 6.1164 0.2088 -0.0203 24 1 9.3807 0.9008 -0.0410 25 1 1.7881 -2.8833 1.0343 26 1 2.6339 -3.1355 -0.5114 27 1 0.9260 -2.6338 -0.5029 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259601258.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:23 Heat of formation + Delta-G solvation = -3.319074 kcal Electronic energy + Delta-G solvation = -13303.616270 eV Core-core repulsion = 10868.523371 eV Total energy + Delta-G solvation = -2435.092900 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.090 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -43.54858 -39.81713 -36.09420 -34.36865 -33.55941 -32.95014 -29.29516 -27.32320 -26.90136 -24.44051 -20.88625 -20.75456 -19.87438 -18.39818 -17.53701 -16.82672 -16.64322 -15.79379 -15.13265 -14.79904 -14.55396 -13.91965 -13.80171 -13.55987 -13.50587 -12.93456 -12.89810 -12.80533 -12.48246 -12.11641 -11.60343 -11.56438 -10.56316 -10.21912 -10.05053 -9.54887 -8.52063 -5.99717 0.71679 1.20177 1.40965 1.49121 1.54158 2.11419 2.29856 2.50530 3.15305 3.28197 3.72073 3.92848 4.23644 4.42797 4.59650 4.81216 4.96515 5.00113 5.11952 5.15547 5.32091 5.35184 5.67167 5.93791 6.29566 6.51996 6.97267 7.05745 7.48395 8.00834 8.65499 Molecular weight = 209.09amu Principal moments of inertia in cm(-1) A = 0.063168 B = 0.007720 C = 0.006914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 443.153547 B = 3626.006087 C = 4048.706029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.026 3.974 3 N -0.371 5.371 4 H 0.459 0.541 5 N -0.296 5.296 6 C -0.019 4.019 7 C 0.506 3.494 8 O -0.619 6.619 9 N -0.549 5.549 10 C -0.340 4.340 11 H 0.089 0.911 12 C -0.013 4.013 13 N -0.916 5.916 14 Si 1.005 2.995 15 H -0.267 1.267 16 H -0.268 1.268 17 H -0.267 1.267 18 C -0.186 4.186 19 C -0.066 4.066 20 H 0.094 0.906 21 H 0.096 0.904 22 H 0.096 0.904 23 H 0.398 0.602 24 H 0.281 0.719 25 H 0.063 0.937 26 H 0.047 0.953 27 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.794 2.900 0.016 15.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.101 4.101 3 N -0.087 5.087 4 H 0.307 0.693 5 N -0.132 5.132 6 C -0.179 4.179 7 C 0.293 3.707 8 O -0.505 6.505 9 N -0.184 5.184 10 C -0.470 4.470 11 H 0.107 0.893 12 C -0.214 4.214 13 N -0.555 5.555 14 Si 0.827 3.173 15 H -0.192 1.192 16 H -0.192 1.192 17 H -0.192 1.192 18 C -0.197 4.197 19 C -0.124 4.124 20 H 0.113 0.887 21 H 0.114 0.886 22 H 0.115 0.885 23 H 0.232 0.768 24 H 0.091 0.909 25 H 0.082 0.918 26 H 0.066 0.934 27 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -13.976 3.199 0.012 14.338 hybrid contribution 0.598 0.050 0.020 0.600 sum -13.379 3.250 0.032 13.768 Atomic orbital electron populations 1.20520 0.82549 1.05555 1.04756 1.21788 0.96974 0.85520 1.05792 1.43248 1.02016 1.10354 1.53116 0.69334 1.73556 1.03334 1.14782 1.21535 1.22010 0.95537 0.90091 1.10237 1.17163 0.82470 0.86744 0.84364 1.90525 1.86990 1.14162 1.58845 1.41868 1.04529 1.09708 1.62287 1.19841 0.84036 0.92752 1.50362 0.89297 1.26308 1.02507 0.97095 0.95493 1.69711 1.28264 1.08915 1.48652 0.84829 0.75581 0.77596 0.79329 1.19202 1.19209 1.19191 1.20456 0.90109 0.98319 1.10798 1.20071 1.01370 0.88903 1.02044 0.88721 0.88567 0.88545 0.76835 0.90910 0.91787 0.93370 0.88763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.00 10.26 71.24 0.73 -0.27 15 2 C 0.03 0.69 7.23 41.40 0.30 0.99 15 3 N -0.37 -10.39 6.83 -47.93 -0.33 -10.72 15 4 H 0.46 8.25 8.96 -219.99 -1.97 6.28 15 5 N -0.30 -12.00 11.92 -48.20 -0.57 -12.57 15 6 C -0.02 -0.88 7.13 42.43 0.30 -0.57 15 7 C 0.51 28.42 7.77 86.71 0.67 29.10 15 8 O -0.62 -37.35 14.69 -4.07 -0.06 -37.41 15 9 N -0.55 -32.27 5.28 -309.82 -1.63 -33.90 15 10 C -0.34 -20.64 9.68 84.09 0.81 -19.83 15 11 H 0.09 5.57 7.15 -2.91 -0.02 5.55 15 12 C -0.01 -0.75 5.50 84.95 0.47 -0.28 15 13 N -0.92 -52.39 13.05 21.68 0.28 -52.10 15 14 Si 1.00 44.07 29.55 68.60 2.03 46.10 15 15 H -0.27 -11.45 7.11 99.48 0.71 -10.74 15 16 H -0.27 -10.96 7.11 99.48 0.71 -10.26 15 17 H -0.27 -11.44 7.11 99.48 0.71 -10.74 15 18 C -0.19 -6.82 6.25 -19.71 -0.12 -6.94 15 19 C -0.07 -2.15 9.74 71.24 0.69 -1.46 15 20 H 0.09 0.99 8.14 -2.39 -0.02 0.97 15 21 H 0.10 0.77 8.14 -2.39 -0.02 0.75 15 22 H 0.10 1.11 7.30 -2.39 -0.02 1.10 15 23 H 0.40 23.11 7.62 -92.71 -0.71 22.40 15 24 H 0.28 14.86 8.31 -92.71 -0.77 14.09 15 25 H 0.06 1.98 8.14 -2.39 -0.02 1.96 15 26 H 0.05 1.91 6.72 -2.39 -0.02 1.90 15 27 H 0.09 2.17 7.30 -2.38 -0.02 2.15 15 Total: -1.00 -76.57 243.98 2.11 -74.45 By element: Atomic # 1 Polarization: 26.87 SS G_CDS: -1.46 Total: 25.41 kcal Atomic # 6 Polarization: -3.12 SS G_CDS: 3.86 Total: 0.73 kcal Atomic # 7 Polarization: -107.04 SS G_CDS: -2.25 Total: -109.29 kcal Atomic # 8 Polarization: -37.35 SS G_CDS: -0.06 Total: -37.41 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -76.57 2.11 -74.45 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259601258.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.135 kcal (2) G-P(sol) polarization free energy of solvation -76.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds