Wall clock time and date at job start Sun Mar 29 2020 21:52:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.46763 * 2 1 4 4 C 1.50698 * 109.46971 * 240.00523 * 2 1 3 5 5 C 1.34516 * 125.78927 * 101.56871 * 4 2 1 6 6 C 1.41387 * 106.84096 * 179.88875 * 5 4 2 7 7 C 1.34521 * 106.83863 * 0.36665 * 6 5 4 8 8 O 1.34298 * 125.78807 * 281.87043 * 4 2 1 9 9 N 1.46896 * 109.47185 * 120.00348 * 2 1 3 10 10 C 1.46899 * 111.00051 * 305.48217 * 9 2 1 11 11 C 1.46900 * 110.99890 * 181.53094 * 9 2 1 12 12 C 1.50703 * 109.47147 * 190.00042 * 11 9 2 13 13 H 1.08004 * 119.99594 * 359.97438 * 12 11 9 14 14 C 1.37870 * 120.00037 * 179.97438 * 12 11 9 15 15 N 1.31521 * 120.00016 * 179.97438 * 14 12 11 16 16 Si 1.86802 * 120.00250 * 0.02562 * 14 12 11 17 17 H 1.48503 * 109.47077 * 89.99635 * 16 14 12 18 18 H 1.48498 * 109.47377 * 209.99703 * 16 14 12 19 19 H 1.48501 * 109.46821 * 330.00091 * 16 14 12 20 20 H 1.09005 * 109.47164 * 179.97438 * 1 2 3 21 21 H 1.09006 * 109.47302 * 299.99398 * 1 2 3 22 22 H 1.09000 * 109.47225 * 59.99646 * 1 2 3 23 23 H 1.07996 * 126.57767 * 0.02562 * 5 4 2 24 24 H 1.07992 * 126.58071 * 180.16621 * 6 5 4 25 25 H 1.07999 * 125.79023 * 179.74753 * 7 6 5 26 26 H 1.09003 * 109.47170 * 65.57432 * 10 9 2 27 27 H 1.09000 * 109.47136 * 185.57499 * 10 9 2 28 28 H 1.09003 * 109.47539 * 305.57790 * 10 9 2 29 29 H 1.08999 * 109.46938 * 309.99922 * 11 9 2 30 30 H 1.08994 * 109.47410 * 69.99985 * 11 9 2 31 31 H 0.96996 * 119.99706 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 6 2.5008 -0.1188 -2.3441 6 6 2.8621 -1.1540 -3.2368 7 6 2.5852 -2.3161 -2.6184 8 8 2.0828 -2.0411 -1.4035 9 7 2.0196 -0.6925 1.1994 10 6 1.4446 -0.1063 2.4174 11 6 3.4877 -0.6805 1.2517 12 6 3.9588 -1.5999 2.3490 13 1 3.2395 -2.1389 2.9478 14 6 5.3079 -1.7529 2.5883 15 7 5.7190 -2.5549 3.5462 16 14 6.5519 -0.8201 1.5530 17 1 6.8408 0.4908 2.1882 18 1 7.8058 -1.6096 1.4551 19 1 5.9980 -0.5997 0.1929 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8901 22 1 -0.3634 0.5139 -0.8899 23 1 2.5867 0.9431 -2.5213 24 1 3.2774 -1.0346 -4.2265 25 1 2.7401 -3.3028 -3.0293 26 1 0.3684 -0.2790 2.4307 27 1 1.8979 -0.5708 3.2931 28 1 1.6407 0.9658 2.4323 29 1 3.8881 -1.0198 0.2964 30 1 3.8358 0.3327 1.4523 31 1 6.6682 -2.6622 3.7148 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259858879.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:32 Heat of formation + Delta-G solvation = 23.775629 kcal Electronic energy + Delta-G solvation = -14027.031542 eV Core-core repulsion = 11696.653900 eV Total energy + Delta-G solvation = -2330.377642 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.13152 -37.28156 -32.91779 -32.48104 -31.12603 -28.75373 -27.09864 -25.40692 -22.19328 -21.35987 -20.74521 -19.33883 -17.15181 -16.58619 -15.58699 -15.07378 -14.71566 -14.35994 -13.35244 -13.21749 -12.89245 -12.42913 -12.40790 -12.25161 -11.94158 -11.61747 -11.30683 -11.04715 -10.88687 -10.62539 -10.20322 -9.80118 -9.51610 -9.26995 -8.55991 -8.04650 -7.45245 -6.03490 -4.00182 2.18270 2.96900 3.29155 3.36875 3.41884 3.46758 4.44223 4.63658 5.00999 5.28642 5.33070 5.40148 5.49376 5.56127 5.85810 5.94414 6.07722 6.12853 6.18974 6.25368 6.38895 6.49868 6.68085 6.84042 6.86139 6.99479 7.54756 7.64192 7.88985 8.00959 8.66131 9.04749 9.58513 11.09594 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.027796 B = 0.012135 C = 0.009663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.105968 B = 2306.794410 C = 2896.912275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.151 3.849 3 H 0.060 0.940 4 C 0.028 3.972 5 C -0.231 4.231 6 C -0.219 4.219 7 C -0.049 4.049 8 O -0.149 6.149 9 N -0.524 5.524 10 C 0.032 3.968 11 C 0.162 3.838 12 C -0.506 4.506 13 H 0.082 0.918 14 C 0.069 3.931 15 N -0.900 5.900 16 Si 0.871 3.129 17 H -0.277 1.277 18 H -0.285 1.285 19 H -0.266 1.266 20 H 0.067 0.933 21 H 0.065 0.935 22 H 0.056 0.944 23 H 0.141 0.859 24 H 0.142 0.858 25 H 0.197 0.803 26 H 0.055 0.945 27 H 0.085 0.915 28 H 0.012 0.988 29 H 0.030 0.970 30 H -0.017 1.017 31 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.841 5.270 -10.508 14.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.042 3.958 3 H 0.077 0.923 4 C -0.024 4.024 5 C -0.251 4.251 6 C -0.239 4.239 7 C -0.118 4.118 8 O -0.043 6.043 9 N -0.249 5.249 10 C -0.116 4.116 11 C 0.036 3.964 12 C -0.544 4.544 13 H 0.100 0.900 14 C -0.132 4.132 15 N -0.539 5.539 16 Si 0.698 3.302 17 H -0.203 1.203 18 H -0.211 1.211 19 H -0.191 1.191 20 H 0.086 0.914 21 H 0.084 0.916 22 H 0.075 0.925 23 H 0.159 0.841 24 H 0.160 0.840 25 H 0.214 0.786 26 H 0.073 0.927 27 H 0.104 0.896 28 H 0.031 0.969 29 H 0.048 0.952 30 H 0.001 0.999 31 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.924 4.494 -10.217 13.688 hybrid contribution 1.350 1.374 -0.756 2.069 sum -6.574 5.868 -10.973 14.073 Atomic orbital electron populations 1.21901 0.93498 1.03045 1.01601 1.20206 0.95294 0.93577 0.86765 0.92285 1.22361 1.02224 0.80779 0.97012 1.21468 1.08533 1.00199 0.94907 1.21681 1.08053 0.92405 1.01714 1.24000 1.03099 1.00149 0.84538 1.84153 1.63458 1.24497 1.32182 1.62063 1.10622 1.52314 0.99857 1.22337 0.98829 0.96148 0.94257 1.20218 0.82564 0.95251 0.98386 1.21001 0.92596 1.25351 1.15447 0.90024 1.24865 0.98178 0.95127 0.95025 1.69892 1.15232 1.37603 1.31222 0.86916 0.81388 0.80177 0.81706 1.20300 1.21071 1.19109 0.91401 0.91597 0.92491 0.84137 0.84046 0.78611 0.92678 0.89648 0.96912 0.95213 0.99907 0.92692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 8.76 37.16 0.33 -1.72 16 2 C 0.15 2.70 2.52 -68.87 -0.17 2.52 16 3 H 0.06 1.01 8.13 -51.93 -0.42 0.59 16 4 C 0.03 0.52 4.56 -35.62 -0.16 0.36 16 5 C -0.23 -3.86 10.80 -39.70 -0.43 -4.29 16 6 C -0.22 -3.37 10.91 -39.70 -0.43 -3.80 16 7 C -0.05 -0.79 12.09 29.42 0.36 -0.43 16 8 O -0.15 -2.93 10.65 5.70 0.06 -2.87 16 9 N -0.52 -11.31 4.61 -237.73 -1.10 -12.41 16 10 C 0.03 0.61 8.76 60.06 0.53 1.14 16 11 C 0.16 4.09 3.64 -4.97 -0.02 4.07 16 12 C -0.51 -14.72 8.93 -34.44 -0.31 -15.03 16 13 H 0.08 2.56 7.42 -52.48 -0.39 2.18 16 14 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 15 N -0.90 -27.99 13.96 55.43 0.77 -27.22 16 16 Si 0.87 22.18 27.47 -169.99 -4.67 17.51 16 17 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 18 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 19 H -0.27 -6.69 6.54 56.52 0.37 -6.32 16 20 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 21 H 0.07 0.84 6.46 -51.93 -0.34 0.51 16 22 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 23 H 0.14 2.02 8.06 -52.49 -0.42 1.60 16 24 H 0.14 1.74 8.06 -52.49 -0.42 1.32 16 25 H 0.20 2.31 8.06 -52.49 -0.42 1.89 16 26 H 0.05 0.88 6.56 -51.93 -0.34 0.54 16 27 H 0.08 1.82 6.65 -51.93 -0.35 1.47 16 28 H 0.01 0.22 8.13 -51.93 -0.42 -0.20 16 29 H 0.03 0.80 5.88 -51.93 -0.31 0.49 16 30 H -0.02 -0.42 7.55 -51.93 -0.39 -0.81 16 31 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 259.43 15.07 3.91 3.91 Total: -1.00 -32.42 259.43 -5.67 -38.08 By element: Atomic # 1 Polarization: 2.44 SS G_CDS: -4.23 Total: -1.80 kcal Atomic # 6 Polarization: -14.79 SS G_CDS: -0.41 Total: -15.21 kcal Atomic # 7 Polarization: -39.30 SS G_CDS: -0.32 Total: -39.63 kcal Atomic # 8 Polarization: -2.93 SS G_CDS: 0.06 Total: -2.87 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.67 Total: 17.51 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -32.42 -5.67 -38.08 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259858879.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.860 kcal (2) G-P(sol) polarization free energy of solvation -32.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds