Wall clock time and date at job start Sun Mar 29 2020 21:52:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.47229 * 2 1 4 4 C 1.50693 * 109.47518 * 120.00202 * 2 1 3 5 5 C 1.34518 * 125.79165 * 259.99944 * 4 2 1 6 6 C 1.41380 * 106.83970 * 180.02562 * 5 4 2 7 7 C 1.34516 * 106.84374 * 359.97438 * 6 5 4 8 8 O 1.34302 * 108.42028 * 359.73877 * 7 6 5 9 9 N 1.46907 * 109.47031 * 240.00657 * 2 1 3 10 10 C 1.46899 * 110.99599 * 306.04436 * 9 2 1 11 11 C 1.46895 * 111.00018 * 69.99507 * 9 2 1 12 12 C 1.50706 * 109.47182 * 170.00113 * 11 9 2 13 13 H 1.08000 * 119.99302 * 0.02562 * 12 11 9 14 14 C 1.37871 * 120.00436 * 179.72677 * 12 11 9 15 15 N 1.31515 * 119.99684 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00405 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47050 * 59.99579 * 16 14 12 18 18 H 1.48496 * 109.47289 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.46492 * 299.99554 * 16 14 12 20 20 H 1.08999 * 109.47225 * 299.99419 * 1 2 3 21 21 H 1.08996 * 109.47361 * 59.99924 * 1 2 3 22 22 H 1.08998 * 109.47229 * 179.97438 * 1 2 3 23 23 H 1.07994 * 126.57647 * 359.96669 * 5 4 2 24 24 H 1.08001 * 126.57986 * 180.02562 * 6 5 4 25 25 H 1.08006 * 125.79059 * 180.02562 * 7 6 5 26 26 H 1.08998 * 109.47218 * 183.95834 * 10 9 2 27 27 H 1.09004 * 109.47214 * 303.95234 * 10 9 2 28 28 H 1.08996 * 109.47566 * 63.95524 * 10 9 2 29 29 H 1.09001 * 109.47613 * 50.00459 * 11 9 2 30 30 H 1.08998 * 109.47678 * 290.00354 * 11 9 2 31 31 H 0.97004 * 120.00247 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2303 5 6 2.4733 -0.1191 2.3553 6 6 2.8445 -1.1544 3.2437 7 6 2.6077 -2.3164 2.6088 8 8 2.1101 -2.0415 1.3920 9 7 2.0196 -0.6924 -1.1996 10 6 1.4342 -2.0353 -1.3080 11 6 1.7528 0.0974 -2.4091 12 6 2.4772 -0.5160 -3.5796 13 1 3.0756 -1.4040 -3.4390 14 6 2.3711 0.0528 -4.8310 15 7 1.6373 1.1305 -5.0033 16 14 3.2685 -0.7079 -6.2820 17 1 2.7966 -2.1019 -6.4803 18 1 2.9931 0.0863 -7.5061 19 1 4.7290 -0.7132 -6.0130 20 1 -0.3633 0.5137 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0276 -0.0005 23 1 2.5332 0.9427 2.5432 24 1 3.2412 -1.0351 4.2411 25 1 2.7831 -3.3032 3.0113 26 1 1.8663 -2.5520 -2.1650 27 1 1.6466 -2.5987 -0.3993 28 1 0.3555 -1.9520 -1.4400 29 1 2.1023 1.1191 -2.2604 30 1 0.6813 0.1055 -2.6087 31 1 1.5623 1.5305 -5.8838 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259858895.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:33 Heat of formation + Delta-G solvation = 21.082336 kcal Electronic energy + Delta-G solvation = -13831.441700 eV Core-core repulsion = 11500.947268 eV Total energy + Delta-G solvation = -2330.494432 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.24964 -37.30334 -32.96394 -32.64260 -30.73163 -28.06054 -27.09713 -25.23619 -23.06306 -21.41896 -20.64178 -19.38296 -16.90453 -16.30904 -15.67867 -15.02245 -14.57195 -14.18295 -13.66990 -13.23112 -12.76579 -12.57462 -12.38259 -12.04359 -11.71967 -11.58356 -11.02823 -10.84264 -10.76388 -10.51936 -10.35550 -9.84776 -9.61241 -9.24522 -8.43726 -8.13949 -7.24293 -6.02637 -4.03696 2.08918 2.91388 3.34448 3.35335 3.38191 3.41701 4.42687 4.87850 5.08605 5.28849 5.31024 5.33740 5.58347 5.64729 5.95902 6.05103 6.15445 6.17388 6.27310 6.36423 6.41965 6.60346 6.79267 6.91409 7.25232 7.33695 7.50916 7.79410 8.05459 8.17708 8.52624 9.03395 9.60297 11.08240 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.054650 B = 0.007452 C = 0.007073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.225084 B = 3756.467872 C = 3957.837296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.152 3.848 3 H 0.104 0.896 4 C 0.033 3.967 5 C -0.229 4.229 6 C -0.213 4.213 7 C -0.063 4.063 8 O -0.163 6.163 9 N -0.532 5.532 10 C 0.028 3.972 11 C 0.192 3.808 12 C -0.508 4.508 13 H 0.063 0.937 14 C 0.055 3.945 15 N -0.900 5.900 16 Si 0.899 3.101 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.276 1.276 20 H 0.055 0.945 21 H 0.072 0.928 22 H 0.060 0.940 23 H 0.143 0.857 24 H 0.141 0.859 25 H 0.195 0.805 26 H 0.072 0.928 27 H 0.061 0.939 28 H 0.017 0.983 29 H 0.030 0.970 30 H -0.003 1.003 31 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.812 -3.878 12.744 13.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.043 3.957 3 H 0.122 0.878 4 C -0.018 4.018 5 C -0.248 4.248 6 C -0.232 4.232 7 C -0.130 4.130 8 O -0.059 6.059 9 N -0.256 5.256 10 C -0.120 4.120 11 C 0.067 3.933 12 C -0.546 4.546 13 H 0.081 0.919 14 C -0.146 4.146 15 N -0.539 5.539 16 Si 0.727 3.273 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.201 1.201 20 H 0.074 0.926 21 H 0.090 0.910 22 H 0.079 0.921 23 H 0.161 0.839 24 H 0.159 0.841 25 H 0.212 0.788 26 H 0.091 0.909 27 H 0.079 0.921 28 H 0.036 0.964 29 H 0.048 0.952 30 H 0.015 0.985 31 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.444 -4.010 12.403 13.043 hybrid contribution -0.280 -0.118 -0.638 0.706 sum -0.724 -4.128 11.765 12.489 Atomic orbital electron populations 1.22467 0.96634 1.02571 1.02441 1.20346 0.92598 0.96546 0.86238 0.87848 1.22715 1.01527 0.80215 0.97324 1.21470 1.08597 1.00320 0.94445 1.21703 1.07648 0.92446 1.01419 1.23976 1.04203 1.00077 0.84751 1.84174 1.64353 1.25018 1.32310 1.62393 1.57212 1.03221 1.02755 1.22443 0.96527 0.91370 1.01705 1.19773 0.95218 0.93137 0.85155 1.21120 1.29331 1.12140 0.92033 0.91893 1.24975 0.95589 0.95093 0.98911 1.69944 1.39867 1.20757 1.23346 0.86546 0.80252 0.79080 0.81453 1.20290 1.21346 1.20149 0.92629 0.90955 0.92143 0.83892 0.84099 0.78849 0.90940 0.92080 0.96448 0.95174 0.98527 0.92860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.05 8.43 37.16 0.31 -2.74 16 2 C 0.15 2.83 2.78 -68.87 -0.19 2.64 16 3 H 0.10 1.88 7.92 -51.93 -0.41 1.46 16 4 C 0.03 0.58 6.03 -35.63 -0.21 0.36 16 5 C -0.23 -3.49 10.80 -39.70 -0.43 -3.92 16 6 C -0.21 -2.87 10.91 -39.70 -0.43 -3.30 16 7 C -0.06 -0.85 12.09 29.42 0.36 -0.49 16 8 O -0.16 -2.76 7.80 5.69 0.04 -2.71 16 9 N -0.53 -11.82 4.69 -237.74 -1.12 -12.94 16 10 C 0.03 0.57 8.48 60.06 0.51 1.08 16 11 C 0.19 4.98 4.29 -4.98 -0.02 4.96 16 12 C -0.51 -14.38 8.52 -34.44 -0.29 -14.68 16 13 H 0.06 1.78 7.10 -52.49 -0.37 1.40 16 14 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 15 N -0.90 -26.67 13.29 55.43 0.74 -25.93 16 16 Si 0.90 21.78 29.54 -169.99 -5.02 16.76 16 17 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 18 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 21 H 0.07 1.30 6.91 -51.93 -0.36 0.94 16 22 H 0.06 1.01 6.41 -51.93 -0.33 0.68 16 23 H 0.14 1.91 8.06 -52.49 -0.42 1.49 16 24 H 0.14 1.50 8.06 -52.49 -0.42 1.08 16 25 H 0.19 1.81 8.06 -52.48 -0.42 1.39 16 26 H 0.07 1.58 6.86 -51.93 -0.36 1.22 16 27 H 0.06 1.15 5.07 -51.93 -0.26 0.89 16 28 H 0.02 0.34 6.46 -51.93 -0.34 0.01 16 29 H 0.03 0.83 7.93 -51.93 -0.41 0.42 16 30 H 0.00 -0.08 7.06 -51.93 -0.37 -0.45 16 31 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 256.76 15.07 3.87 3.87 Total: -1.00 -30.52 256.76 -6.02 -36.55 By element: Atomic # 1 Polarization: 3.05 SS G_CDS: -4.03 Total: -0.99 kcal Atomic # 6 Polarization: -14.10 SS G_CDS: -0.50 Total: -14.60 kcal Atomic # 7 Polarization: -38.49 SS G_CDS: -0.38 Total: -38.87 kcal Atomic # 8 Polarization: -2.76 SS G_CDS: 0.04 Total: -2.71 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -30.52 -6.02 -36.55 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259858895.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.629 kcal (2) G-P(sol) polarization free energy of solvation -30.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds