Wall clock time and date at job start Sun Mar 29 2020 21:52:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.47229 * 2 1 4 4 C 1.50693 * 109.47518 * 120.00202 * 2 1 3 5 5 C 1.34518 * 125.79165 * 259.99944 * 4 2 1 6 6 C 1.41380 * 106.83970 * 180.02562 * 5 4 2 7 7 C 1.34516 * 106.84374 * 359.97438 * 6 5 4 8 8 O 1.34302 * 108.42028 * 359.73877 * 7 6 5 9 9 N 1.46907 * 109.47031 * 240.00657 * 2 1 3 10 10 C 1.46899 * 110.99599 * 306.04436 * 9 2 1 11 11 C 1.46895 * 111.00018 * 69.99507 * 9 2 1 12 12 C 1.50706 * 109.47182 * 170.00113 * 11 9 2 13 13 H 1.08000 * 119.99302 * 0.02562 * 12 11 9 14 14 C 1.37871 * 120.00436 * 179.72677 * 12 11 9 15 15 N 1.31515 * 119.99684 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00405 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47050 * 59.99579 * 16 14 12 18 18 H 1.48496 * 109.47289 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.46492 * 299.99554 * 16 14 12 20 20 H 1.08999 * 109.47225 * 299.99419 * 1 2 3 21 21 H 1.08996 * 109.47361 * 59.99924 * 1 2 3 22 22 H 1.08998 * 109.47229 * 179.97438 * 1 2 3 23 23 H 1.07994 * 126.57647 * 359.96669 * 5 4 2 24 24 H 1.08001 * 126.57986 * 180.02562 * 6 5 4 25 25 H 1.08006 * 125.79059 * 180.02562 * 7 6 5 26 26 H 1.08998 * 109.47218 * 183.95834 * 10 9 2 27 27 H 1.09004 * 109.47214 * 303.95234 * 10 9 2 28 28 H 1.08996 * 109.47566 * 63.95524 * 10 9 2 29 29 H 1.09001 * 109.47613 * 50.00459 * 11 9 2 30 30 H 1.08998 * 109.47678 * 290.00354 * 11 9 2 31 31 H 0.97004 * 120.00247 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2303 5 6 2.4733 -0.1191 2.3553 6 6 2.8445 -1.1544 3.2437 7 6 2.6077 -2.3164 2.6088 8 8 2.1101 -2.0415 1.3920 9 7 2.0196 -0.6924 -1.1996 10 6 1.4342 -2.0353 -1.3080 11 6 1.7528 0.0974 -2.4091 12 6 2.4772 -0.5160 -3.5796 13 1 3.0756 -1.4040 -3.4390 14 6 2.3711 0.0528 -4.8310 15 7 1.6373 1.1305 -5.0033 16 14 3.2685 -0.7079 -6.2820 17 1 2.7966 -2.1019 -6.4803 18 1 2.9931 0.0863 -7.5061 19 1 4.7290 -0.7132 -6.0130 20 1 -0.3633 0.5137 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0276 -0.0005 23 1 2.5332 0.9427 2.5432 24 1 3.2412 -1.0351 4.2411 25 1 2.7831 -3.3032 3.0113 26 1 1.8663 -2.5520 -2.1650 27 1 1.6466 -2.5987 -0.3993 28 1 0.3555 -1.9520 -1.4400 29 1 2.1023 1.1191 -2.2604 30 1 0.6813 0.1055 -2.6087 31 1 1.5623 1.5305 -5.8838 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259858895.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:33 Heat of formation + Delta-G solvation = 0.989165 kcal Electronic energy + Delta-G solvation = -13832.313005 eV Core-core repulsion = 11500.947268 eV Total energy + Delta-G solvation = -2331.365737 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -43.42040 -38.96607 -34.94611 -33.93081 -32.30481 -29.30955 -29.06328 -26.98497 -24.78301 -22.57010 -22.19392 -20.76515 -18.64103 -17.89250 -16.93856 -16.82421 -16.24168 -15.79043 -15.33510 -14.71179 -14.31566 -14.03311 -13.73166 -13.45567 -13.29186 -13.13326 -12.81737 -12.70816 -12.40915 -12.21637 -12.14127 -11.78814 -11.31657 -10.73609 -10.60829 -9.35183 -8.98209 -8.20439 -6.30382 0.92392 1.41061 1.44149 1.52149 1.81115 2.20780 2.40515 3.11840 3.31228 3.75891 4.11366 4.16994 4.29766 4.37261 4.55576 4.63576 4.70647 4.83095 4.97334 5.02524 5.06913 5.13255 5.25514 5.26981 5.43877 5.64586 5.73238 6.02929 6.28020 6.34355 6.59693 6.84485 7.38879 8.90149 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.054650 B = 0.007452 C = 0.007073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.225084 B = 3756.467872 C = 3957.837296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.151 3.849 3 H 0.099 0.901 4 C -0.002 4.002 5 C -0.223 4.223 6 C -0.219 4.219 7 C -0.056 4.056 8 O -0.185 6.185 9 N -0.544 5.544 10 C 0.035 3.965 11 C 0.209 3.791 12 C -0.528 4.528 13 H 0.059 0.941 14 C 0.004 3.996 15 N -0.932 5.932 16 Si 0.968 3.032 17 H -0.268 1.268 18 H -0.281 1.281 19 H -0.270 1.270 20 H 0.082 0.918 21 H 0.051 0.949 22 H 0.059 0.941 23 H 0.157 0.843 24 H 0.172 0.828 25 H 0.235 0.765 26 H 0.054 0.946 27 H 0.081 0.919 28 H 0.018 0.982 29 H 0.006 0.994 30 H -0.025 1.025 31 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.094 -4.953 14.005 14.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.042 3.958 3 H 0.117 0.883 4 C -0.053 4.053 5 C -0.242 4.242 6 C -0.238 4.238 7 C -0.123 4.123 8 O -0.082 6.082 9 N -0.268 5.268 10 C -0.112 4.112 11 C 0.083 3.917 12 C -0.566 4.566 13 H 0.077 0.923 14 C -0.194 4.194 15 N -0.573 5.573 16 Si 0.793 3.207 17 H -0.193 1.193 18 H -0.206 1.206 19 H -0.195 1.195 20 H 0.100 0.900 21 H 0.070 0.930 22 H 0.078 0.922 23 H 0.175 0.825 24 H 0.189 0.811 25 H 0.251 0.749 26 H 0.073 0.927 27 H 0.100 0.900 28 H 0.036 0.964 29 H 0.024 0.976 30 H -0.007 1.007 31 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.271 -5.089 13.688 14.606 hybrid contribution -0.492 0.208 -0.889 1.037 sum -0.220 -4.881 12.799 13.700 Atomic orbital electron populations 1.22354 0.95472 1.02572 1.02691 1.20313 0.93659 0.96373 0.85439 0.88288 1.22385 1.04605 0.80833 0.97438 1.21816 1.06789 1.01595 0.94035 1.22089 1.07531 0.91659 1.02537 1.24858 1.02117 1.02044 0.83266 1.84090 1.65182 1.24770 1.34149 1.62266 1.58283 1.03664 1.02555 1.22371 0.96294 0.90628 1.01947 1.19395 0.93352 0.92352 0.86609 1.21440 1.29658 1.12258 0.93285 0.92258 1.25871 0.96265 0.95454 1.01825 1.70064 1.41022 1.21984 1.24198 0.85454 0.79021 0.78491 0.77761 1.19321 1.20610 1.19488 0.89960 0.92976 0.92205 0.82501 0.81056 0.74910 0.92704 0.90042 0.96355 0.97556 1.00739 0.92602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.78 8.43 71.98 0.61 -5.17 16 2 C 0.15 5.65 2.78 44.16 0.12 5.77 16 3 H 0.10 3.69 7.92 -2.39 -0.02 3.67 16 4 C 0.00 -0.07 6.03 24.83 0.15 0.08 16 5 C -0.22 -6.32 10.80 22.19 0.24 -6.08 16 6 C -0.22 -5.16 10.91 22.19 0.24 -4.92 16 7 C -0.06 -1.33 12.09 66.97 0.81 -0.53 16 8 O -0.19 -5.93 7.80 -2.55 -0.02 -5.95 16 9 N -0.54 -24.68 4.69 -906.06 -4.25 -28.93 16 10 C 0.04 1.47 8.48 127.69 1.08 2.56 16 11 C 0.21 11.26 4.29 85.56 0.37 11.63 16 12 C -0.53 -30.57 8.52 25.60 0.22 -30.35 16 13 H 0.06 3.40 7.10 -2.91 -0.02 3.38 16 14 C 0.00 0.23 5.46 84.65 0.46 0.70 16 15 N -0.93 -56.25 13.29 21.45 0.28 -55.97 16 16 Si 0.97 44.78 29.54 68.60 2.03 46.81 16 17 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 18 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 19 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 20 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 21 H 0.05 1.93 6.91 -2.39 -0.02 1.91 16 22 H 0.06 1.98 6.41 -2.39 -0.02 1.97 16 23 H 0.16 3.86 8.06 -2.91 -0.02 3.83 16 24 H 0.17 2.89 8.06 -2.91 -0.02 2.87 16 25 H 0.23 3.32 8.06 -2.91 -0.02 3.30 16 26 H 0.05 2.42 6.86 -2.39 -0.02 2.41 16 27 H 0.08 3.04 5.07 -2.38 -0.01 3.03 16 28 H 0.02 0.74 6.46 -2.39 -0.02 0.72 16 29 H 0.01 0.37 7.93 -2.39 -0.02 0.35 16 30 H -0.03 -1.43 7.06 -2.39 -0.02 -1.45 16 31 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 Total: -1.00 -65.84 256.76 3.45 -62.39 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: 1.11 Total: 7.96 kcal Atomic # 6 Polarization: -30.61 SS G_CDS: 4.30 Total: -26.31 kcal Atomic # 7 Polarization: -80.93 SS G_CDS: -3.97 Total: -84.90 kcal Atomic # 8 Polarization: -5.93 SS G_CDS: -0.02 Total: -5.95 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -65.84 3.45 -62.39 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259858895.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.377 kcal (2) G-P(sol) polarization free energy of solvation -65.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds