Wall clock time and date at job start Sun Mar 29 2020 22:02:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86796 * 119.99988 * 2 1 4 4 H 1.48496 * 109.47058 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47407 * 300.00306 * 3 2 1 6 6 H 1.48505 * 109.47004 * 60.00121 * 3 2 1 7 7 C 1.38815 * 119.99882 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99495 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99977 * 0.27643 * 7 2 1 10 10 C 1.47490 * 125.69546 * 358.39539 * 9 7 2 11 11 C 1.55146 * 104.72980 * 155.85372 * 10 9 7 12 12 C 1.55201 * 101.50540 * 37.18777 * 11 10 9 13 13 C 1.46819 * 125.69298 * 178.70055 * 9 7 2 14 14 C 1.52767 * 110.01253 * 61.81767 * 13 9 7 15 15 C 1.53048 * 109.48596 * 297.85259 * 14 13 9 16 16 C 1.53007 * 109.44947 * 300.46049 * 15 14 13 17 17 C 1.52996 * 109.51757 * 60.25629 * 16 15 14 18 18 C 1.52775 * 110.00211 * 300.28034 * 13 9 7 19 19 H 0.96991 * 120.00077 * 359.97438 * 1 2 3 20 20 H 1.09000 * 110.35959 * 274.78475 * 10 9 7 21 21 H 1.09002 * 110.36304 * 37.10255 * 10 9 7 22 22 H 1.08995 * 111.18946 * 279.07647 * 11 10 9 23 23 H 1.08998 * 110.93485 * 155.18267 * 11 10 9 24 24 H 1.09006 * 110.73009 * 206.13700 * 12 11 10 25 25 H 1.08999 * 110.88989 * 82.90893 * 12 11 10 26 26 H 1.08993 * 109.47297 * 57.85490 * 14 13 9 27 27 H 1.09003 * 109.47022 * 177.84981 * 14 13 9 28 28 H 1.08999 * 109.47460 * 180.47261 * 15 14 13 29 29 H 1.08995 * 109.48094 * 60.45441 * 15 14 13 30 30 H 1.08997 * 109.46255 * 300.23660 * 16 15 14 31 31 H 1.08997 * 109.45271 * 180.26500 * 16 15 14 32 32 H 1.09002 * 109.47094 * 179.74531 * 17 16 15 33 33 H 1.09004 * 109.48154 * 59.73276 * 17 16 15 34 34 H 1.09001 * 109.47137 * 182.14836 * 18 13 9 35 35 H 1.09003 * 109.47288 * 302.14496 * 18 13 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0068 10 6 -0.1417 -2.5347 0.0202 11 6 -0.4108 -3.9258 -0.6119 12 6 0.7807 -4.7526 -0.0592 13 6 1.9298 -3.7258 -0.0351 14 6 2.7823 -3.9411 1.2142 15 6 3.9243 -2.9224 1.2347 16 6 4.7852 -3.0969 -0.0181 17 6 3.9272 -2.8677 -1.2639 18 6 2.7853 -3.8864 -1.2907 19 1 -0.4850 0.8400 0.0004 20 1 -0.5070 -2.5047 1.0467 21 1 -0.6122 -1.7511 -0.5738 22 1 -0.3806 -3.8764 -1.7003 23 1 -1.3616 -4.3326 -0.2676 24 1 1.0177 -5.5813 -0.7265 25 1 0.5679 -5.1171 0.9457 26 1 2.1642 -3.8117 2.1025 27 1 3.1954 -4.9497 1.2028 28 1 4.5373 -3.0816 2.1218 29 1 3.5115 -1.9139 1.2543 30 1 5.1945 -4.1068 -0.0398 31 1 5.6013 -2.3746 -0.0013 32 1 4.5422 -2.9877 -2.1558 33 1 3.5141 -1.8592 -1.2403 34 1 3.1986 -4.8945 -1.3223 35 1 2.1693 -3.7184 -2.1741 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260114838.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:33 Heat of formation + Delta-G solvation = 8.519843 kcal Electronic energy + Delta-G solvation = -15244.146614 eV Core-core repulsion = 13048.940526 eV Total energy + Delta-G solvation = -2195.206088 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.81745 -36.47588 -34.62181 -31.43903 -31.04934 -30.66136 -26.75038 -25.14034 -23.39002 -22.26793 -21.06067 -19.93475 -18.78310 -16.49127 -16.29056 -15.86150 -15.19225 -14.88222 -14.57278 -14.08776 -13.72800 -13.53722 -13.27166 -13.05579 -12.82349 -12.68947 -12.55229 -12.19017 -12.00945 -11.84417 -11.77541 -11.58392 -11.33079 -10.75877 -10.59174 -10.57816 -10.16812 -8.72632 -7.62997 -5.02291 1.46705 1.47727 1.56107 2.56000 3.43574 3.70214 4.01354 4.07526 4.21244 4.26223 4.41157 4.45764 4.68038 4.70624 4.84187 4.88962 4.90169 4.99556 5.02197 5.05196 5.17706 5.24667 5.28045 5.33202 5.49505 5.58544 5.60809 5.64675 5.73066 5.87651 5.94537 6.03409 6.45966 7.24902 7.96910 8.62010 9.39319 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.027935 B = 0.016633 C = 0.012088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.102881 B = 1682.973633 C = 2315.767828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.085 4.085 3 Si 0.957 3.043 4 H -0.262 1.262 5 H -0.299 1.299 6 H -0.301 1.301 7 C -0.204 4.204 8 H 0.120 0.880 9 N -0.601 5.601 10 C 0.147 3.853 11 C -0.134 4.134 12 C -0.116 4.116 13 C 0.171 3.829 14 C -0.109 4.109 15 C -0.140 4.140 16 C -0.103 4.103 17 C -0.143 4.143 18 C -0.105 4.105 19 H 0.238 0.762 20 H -0.022 1.022 21 H 0.071 0.929 22 H 0.058 0.942 23 H 0.074 0.926 24 H 0.087 0.913 25 H 0.066 0.934 26 H 0.034 0.966 27 H 0.071 0.929 28 H 0.056 0.944 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.131 -9.450 -0.808 11.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.608 5.608 2 C -0.276 4.276 3 Si 0.787 3.213 4 H -0.186 1.186 5 H -0.227 1.227 6 H -0.229 1.229 7 C -0.333 4.333 8 H 0.137 0.863 9 N -0.324 5.324 10 C 0.022 3.978 11 C -0.172 4.172 12 C -0.154 4.154 13 C 0.083 3.917 14 C -0.148 4.148 15 C -0.177 4.177 16 C -0.141 4.141 17 C -0.180 4.180 18 C -0.144 4.144 19 H 0.048 0.952 20 H -0.004 1.004 21 H 0.089 0.911 22 H 0.077 0.923 23 H 0.093 0.907 24 H 0.105 0.895 25 H 0.085 0.915 26 H 0.053 0.947 27 H 0.089 0.911 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 6.123 -9.242 -0.807 11.116 hybrid contribution -0.108 1.364 0.210 1.384 sum 6.015 -7.878 -0.597 9.930 Atomic orbital electron populations 1.70061 1.06093 1.23882 1.60769 1.25554 0.96398 1.00503 1.05136 0.85273 0.78668 0.81080 0.76232 1.18613 1.22677 1.22931 1.20116 0.92262 0.82927 1.37964 0.86298 1.44754 1.01696 1.00601 1.85371 1.21816 0.85214 0.95092 0.95700 1.22866 0.98213 0.96491 0.99645 1.22601 0.94630 0.97040 1.01100 1.20489 0.92484 0.85055 0.93651 1.21788 0.96824 0.98558 0.97613 1.21889 0.96794 1.01545 0.97508 1.21384 0.97098 1.01359 0.94227 1.21949 0.96845 1.01819 0.97421 1.21745 0.96632 0.98506 0.97516 0.95207 1.00367 0.91074 0.92309 0.90734 0.89487 0.91501 0.94719 0.91076 0.92559 0.91385 0.91272 0.92509 0.92466 0.91040 0.91093 0.94232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.82 10.07 21.65 0.22 -57.60 16 2 C -0.09 -4.80 5.49 84.86 0.47 -4.34 16 3 Si 0.96 46.01 29.55 68.60 2.03 48.04 16 4 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 5 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 6 H -0.30 -14.79 7.11 99.48 0.71 -14.08 16 7 C -0.20 -10.76 6.63 84.04 0.56 -10.20 16 8 H 0.12 5.89 3.14 -2.91 -0.01 5.89 16 9 N -0.60 -29.45 2.87 -646.47 -1.86 -31.31 16 10 C 0.15 7.36 5.96 86.93 0.52 7.88 16 11 C -0.13 -5.07 7.10 32.08 0.23 -4.85 16 12 C -0.12 -3.89 6.00 31.73 0.19 -3.70 16 13 C 0.17 6.59 0.77 3.77 0.00 6.60 16 14 C -0.11 -3.87 4.76 30.53 0.15 -3.72 16 15 C -0.14 -5.00 5.58 30.61 0.17 -4.82 16 16 C -0.10 -3.24 5.75 30.60 0.18 -3.06 16 17 C -0.14 -5.05 5.58 30.61 0.17 -4.88 16 18 C -0.10 -3.67 4.74 30.53 0.14 -3.52 16 19 H 0.24 14.20 8.31 -92.71 -0.77 13.43 16 20 H -0.02 -1.18 8.14 -2.39 -0.02 -1.20 16 21 H 0.07 4.09 5.79 -2.39 -0.01 4.08 16 22 H 0.06 2.20 8.14 -2.39 -0.02 2.19 16 23 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 24 H 0.09 2.41 7.81 -2.38 -0.02 2.39 16 25 H 0.07 2.14 7.83 -2.39 -0.02 2.12 16 26 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 28 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.07 2.95 4.45 -2.39 -0.01 2.94 16 30 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.06 1.67 8.14 -2.39 -0.02 1.66 16 32 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.07 3.07 4.33 -2.38 -0.01 3.05 16 34 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -61.34 253.37 4.21 -57.13 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: 1.06 Total: 12.37 kcal Atomic # 6 Polarization: -31.39 SS G_CDS: 2.77 Total: -28.62 kcal Atomic # 7 Polarization: -87.28 SS G_CDS: -1.64 Total: -88.91 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.04 kcal Total: -61.34 4.21 -57.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260114838.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.648 kcal (2) G-P(sol) polarization free energy of solvation -61.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds