Wall clock time and date at job start Sun Mar 29 2020 21:32:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35744 * 116.99933 * 2 1 4 4 C 1.39433 * 120.04496 * 179.97438 * 3 2 1 5 5 C 1.38382 * 117.99122 * 180.02562 * 4 3 2 6 6 C 1.39682 * 117.95297 * 359.97438 * 5 4 3 7 7 N 1.39007 * 120.10075 * 180.02562 * 6 5 4 8 8 C 1.46494 * 119.99848 * 184.98239 * 7 6 5 9 9 C 1.36888 * 119.99895 * 4.97916 * 7 6 5 10 10 H 1.07995 * 120.00119 * 24.06880 * 9 7 6 11 11 C 1.38800 * 119.99669 * 204.07119 * 9 7 6 12 12 N 1.31587 * 120.00057 * 10.49562 * 11 9 7 13 13 Si 1.86797 * 119.99789 * 190.50020 * 11 9 7 14 14 H 1.48497 * 109.47454 * 59.99599 * 13 11 9 15 15 H 1.48499 * 109.47174 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.46922 * 299.99618 * 13 11 9 17 17 N 1.32429 * 119.79369 * 0.02562 * 6 5 4 18 18 N 1.28344 * 122.14440 * 359.97438 * 17 6 5 19 19 H 1.09002 * 109.46869 * 180.02562 * 1 2 3 20 20 H 1.08996 * 109.47112 * 299.99653 * 1 2 3 21 21 H 1.09000 * 109.47515 * 60.00279 * 1 2 3 22 22 H 1.07996 * 121.00553 * 359.97438 * 4 3 2 23 23 H 1.07999 * 121.02083 * 179.97438 * 5 4 3 24 24 H 1.08994 * 109.47585 * 93.71171 * 8 7 6 25 25 H 1.09009 * 109.47060 * 213.71299 * 8 7 6 26 26 H 1.09005 * 109.47181 * 333.70695 * 8 7 6 27 27 H 0.96995 * 119.99632 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2095 0.0000 4 6 3.4376 1.2836 0.0005 5 6 4.0212 2.5383 0.0011 6 6 3.1786 3.6524 0.0005 7 7 3.7172 4.9338 0.0004 8 6 2.8358 6.0988 0.1100 9 6 5.0712 5.1071 -0.1019 10 1 5.6806 4.3417 -0.5591 11 6 5.6610 6.2667 0.3820 12 7 4.9611 7.1027 1.1188 13 14 7.4480 6.6406 -0.0129 14 1 7.6200 6.7378 -1.4846 15 1 7.8354 7.9281 0.6175 16 1 8.3097 5.5525 0.5153 17 7 1.8651 3.4839 -0.0001 18 7 1.3260 2.3192 -0.0005 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 4.0423 0.3888 0.0014 23 1 5.0951 2.6526 0.0019 24 1 2.7517 6.3938 1.1559 25 1 3.2512 6.9244 -0.4681 26 1 1.8487 5.8452 -0.2766 27 1 5.3732 7.9132 1.4566 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260295158.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:52 Heat of formation + Delta-G solvation = 39.112442 kcal Electronic energy + Delta-G solvation = -13432.453821 eV Core-core repulsion = 10999.200890 eV Total energy + Delta-G solvation = -2433.252931 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.090 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.97943 -37.74203 -36.00317 -32.29797 -31.94276 -29.26239 -27.08930 -26.53453 -24.40907 -22.72025 -21.50580 -17.97350 -17.42255 -16.52653 -16.18825 -15.41375 -14.65868 -14.00857 -13.80977 -13.48172 -13.20458 -12.56997 -12.50725 -11.62632 -11.48257 -11.27247 -10.89813 -10.85042 -10.75635 -10.56424 -10.34864 -9.63608 -9.14179 -8.72082 -8.42843 -7.00435 -6.51218 -3.98576 1.85951 2.30033 3.07155 3.08919 3.10734 3.76262 3.91024 4.53946 4.62935 4.98793 5.40088 5.56013 5.59428 5.70653 5.90539 5.95504 6.06156 6.42958 6.65859 6.73746 6.92102 7.04051 7.19269 7.27680 7.73286 7.96547 8.41928 9.04445 9.28046 10.03132 10.44943 Molecular weight = 209.09amu Principal moments of inertia in cm(-1) A = 0.065773 B = 0.008019 C = 0.007276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 425.604541 B = 3490.704769 C = 3847.374423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 O -0.320 6.320 3 C 0.133 3.867 4 C -0.093 4.093 5 C -0.155 4.155 6 C 0.284 3.716 7 N -0.408 5.408 8 C 0.125 3.875 9 C -0.317 4.317 10 H 0.098 0.902 11 C 0.035 3.965 12 N -0.863 5.863 13 Si 0.933 3.067 14 H -0.271 1.271 15 H -0.281 1.281 16 H -0.270 1.270 17 N -0.323 5.323 18 N -0.254 5.254 19 H 0.084 0.916 20 H 0.051 0.949 21 H 0.050 0.950 22 H 0.134 0.866 23 H 0.144 0.856 24 H 0.059 0.941 25 H 0.061 0.939 26 H 0.045 0.955 27 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.179 -6.075 -1.715 6.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.227 6.227 3 C -0.060 4.060 4 C -0.121 4.121 5 C -0.190 4.190 6 C 0.038 3.962 7 N -0.100 5.100 8 C -0.019 4.019 9 C -0.446 4.446 10 H 0.115 0.885 11 C -0.172 4.172 12 N -0.498 5.498 13 Si 0.759 3.241 14 H -0.196 1.196 15 H -0.206 1.206 16 H -0.195 1.195 17 N -0.184 5.184 18 N -0.109 5.109 19 H 0.103 0.897 20 H 0.069 0.931 21 H 0.069 0.931 22 H 0.152 0.848 23 H 0.162 0.838 24 H 0.077 0.923 25 H 0.080 0.920 26 H 0.064 0.936 27 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.391 -5.147 -1.598 5.896 hybrid contribution 2.105 -0.270 -0.064 2.123 sum -0.286 -5.417 -1.663 5.674 Atomic orbital electron populations 1.22645 0.78985 1.01584 1.01868 1.86060 1.21276 1.24688 1.90636 1.20725 0.90552 0.86300 1.08375 1.21021 0.91977 0.98233 1.00915 1.21566 1.01336 0.90497 1.05557 1.20007 0.90697 0.87625 0.97855 1.42348 1.05795 1.00241 1.61633 1.21449 0.91229 0.87166 1.02020 1.19590 0.81621 1.05715 1.37656 0.88453 1.25452 1.00514 0.96444 0.94794 1.70093 1.37417 1.11950 1.30313 0.85887 0.81102 0.78180 0.78966 1.19598 1.20574 1.19519 1.72576 1.08902 1.12407 1.24473 1.72407 1.32228 0.94244 1.11984 0.89750 0.93067 0.93087 0.84822 0.83802 0.92280 0.92050 0.93612 0.91610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.66 10.40 101.05 1.05 1.71 15 2 O -0.32 -5.87 10.49 -18.94 -0.20 -6.07 15 3 C 0.13 2.77 7.58 -16.93 -0.13 2.65 15 4 C -0.09 -1.82 10.15 -39.08 -0.40 -2.21 15 5 C -0.15 -3.31 9.34 -38.99 -0.36 -3.67 15 6 C 0.28 6.90 7.42 -154.79 -1.15 5.75 15 7 N -0.41 -10.31 3.12 -122.27 -0.38 -10.69 15 8 C 0.12 3.00 8.79 59.84 0.53 3.53 15 9 C -0.32 -7.90 8.93 -15.09 -0.13 -8.04 15 10 H 0.10 2.28 6.38 -52.49 -0.33 1.95 15 11 C 0.03 0.85 5.14 -17.45 -0.09 0.76 15 12 N -0.86 -22.02 10.64 55.49 0.59 -21.43 15 13 Si 0.93 18.81 29.57 -169.99 -5.03 13.79 15 14 H -0.27 -5.40 7.11 56.52 0.40 -5.00 15 15 H -0.28 -5.65 7.11 56.52 0.40 -5.25 15 16 H -0.27 -5.35 7.11 56.52 0.40 -4.95 15 17 N -0.32 -7.91 10.20 31.26 0.32 -7.59 15 18 N -0.25 -5.81 10.39 30.53 0.32 -5.49 15 19 H 0.08 0.92 8.14 -51.93 -0.42 0.50 15 20 H 0.05 0.76 8.11 -51.93 -0.42 0.34 15 21 H 0.05 0.75 8.11 -51.93 -0.42 0.33 15 22 H 0.13 2.13 8.06 -52.49 -0.42 1.71 15 23 H 0.14 2.86 6.40 -52.49 -0.34 2.52 15 24 H 0.06 1.49 7.41 -51.93 -0.38 1.10 15 25 H 0.06 1.48 7.25 -51.92 -0.38 1.10 15 26 H 0.05 1.04 7.21 -51.93 -0.37 0.67 15 27 H 0.27 6.59 8.31 -40.82 -0.34 6.25 15 LS Contribution 238.84 15.07 3.60 3.60 Total: -1.00 -28.05 238.84 -4.09 -32.14 By element: Atomic # 1 Polarization: 3.90 SS G_CDS: -2.63 Total: 1.27 kcal Atomic # 6 Polarization: 1.16 SS G_CDS: -0.69 Total: 0.48 kcal Atomic # 7 Polarization: -46.05 SS G_CDS: 0.85 Total: -45.21 kcal Atomic # 8 Polarization: -5.87 SS G_CDS: -0.20 Total: -6.07 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -5.03 Total: 13.79 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -28.05 -4.09 -32.14 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260295158.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.255 kcal (2) G-P(sol) polarization free energy of solvation -28.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds