Wall clock time and date at job start Sun Mar 29 2020 21:32:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35744 * 116.99933 * 2 1 4 4 C 1.39433 * 120.04496 * 179.97438 * 3 2 1 5 5 C 1.38382 * 117.99122 * 180.02562 * 4 3 2 6 6 C 1.39682 * 117.95297 * 359.97438 * 5 4 3 7 7 N 1.39007 * 120.10075 * 180.02562 * 6 5 4 8 8 C 1.46494 * 119.99848 * 184.98239 * 7 6 5 9 9 C 1.36888 * 119.99895 * 4.97916 * 7 6 5 10 10 H 1.07995 * 120.00119 * 24.06880 * 9 7 6 11 11 C 1.38800 * 119.99669 * 204.07119 * 9 7 6 12 12 N 1.31587 * 120.00057 * 10.49562 * 11 9 7 13 13 Si 1.86797 * 119.99789 * 190.50020 * 11 9 7 14 14 H 1.48497 * 109.47454 * 59.99599 * 13 11 9 15 15 H 1.48499 * 109.47174 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.46922 * 299.99618 * 13 11 9 17 17 N 1.32429 * 119.79369 * 0.02562 * 6 5 4 18 18 N 1.28344 * 122.14440 * 359.97438 * 17 6 5 19 19 H 1.09002 * 109.46869 * 180.02562 * 1 2 3 20 20 H 1.08996 * 109.47112 * 299.99653 * 1 2 3 21 21 H 1.09000 * 109.47515 * 60.00279 * 1 2 3 22 22 H 1.07996 * 121.00553 * 359.97438 * 4 3 2 23 23 H 1.07999 * 121.02083 * 179.97438 * 5 4 3 24 24 H 1.08994 * 109.47585 * 93.71171 * 8 7 6 25 25 H 1.09009 * 109.47060 * 213.71299 * 8 7 6 26 26 H 1.09005 * 109.47181 * 333.70695 * 8 7 6 27 27 H 0.96995 * 119.99632 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2095 0.0000 4 6 3.4376 1.2836 0.0005 5 6 4.0212 2.5383 0.0011 6 6 3.1786 3.6524 0.0005 7 7 3.7172 4.9338 0.0004 8 6 2.8358 6.0988 0.1100 9 6 5.0712 5.1071 -0.1019 10 1 5.6806 4.3417 -0.5591 11 6 5.6610 6.2667 0.3820 12 7 4.9611 7.1027 1.1188 13 14 7.4480 6.6406 -0.0129 14 1 7.6200 6.7378 -1.4846 15 1 7.8354 7.9281 0.6175 16 1 8.3097 5.5525 0.5153 17 7 1.8651 3.4839 -0.0001 18 7 1.3260 2.3192 -0.0005 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 4.0423 0.3888 0.0014 23 1 5.0951 2.6526 0.0019 24 1 2.7517 6.3938 1.1559 25 1 3.2512 6.9244 -0.4681 26 1 1.8487 5.8452 -0.2766 27 1 5.3732 7.9132 1.4566 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260295158.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:52 Heat of formation + Delta-G solvation = 20.170418 kcal Electronic energy + Delta-G solvation = -13433.275209 eV Core-core repulsion = 10999.200890 eV Total energy + Delta-G solvation = -2434.074319 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.090 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.69015 -39.32479 -37.74896 -34.08855 -33.63918 -31.00267 -28.77929 -28.04875 -26.21440 -24.36519 -23.27577 -19.65424 -19.08801 -18.21574 -17.97692 -16.93841 -16.34890 -15.57510 -15.47964 -15.05395 -14.88539 -14.29933 -14.14728 -13.33278 -13.00122 -12.79600 -12.61892 -12.50592 -12.32384 -12.22454 -12.06703 -11.40509 -10.86383 -10.41130 -10.15070 -8.81563 -8.31793 -5.87117 0.17641 0.58913 1.45996 1.51654 1.57177 2.17163 2.35764 2.78109 2.87140 3.18041 3.75498 3.96173 4.23465 4.33493 4.51684 4.59153 4.69946 4.80802 4.89290 4.98122 5.09634 5.29997 5.35132 5.37596 5.92400 6.41335 6.58713 7.22692 7.46963 8.26831 8.66291 Molecular weight = 209.09amu Principal moments of inertia in cm(-1) A = 0.065773 B = 0.008019 C = 0.007276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 425.604541 B = 3490.704769 C = 3847.374423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.319 6.319 3 C 0.144 3.856 4 C -0.081 4.081 5 C -0.157 4.157 6 C 0.269 3.731 7 N -0.434 5.434 8 C 0.143 3.857 9 C -0.337 4.337 10 H 0.108 0.892 11 C -0.010 4.010 12 N -0.899 5.899 13 Si 1.002 2.998 14 H -0.266 1.266 15 H -0.283 1.283 16 H -0.261 1.261 17 N -0.351 5.351 18 N -0.277 5.277 19 H 0.128 0.872 20 H 0.046 0.954 21 H 0.047 0.953 22 H 0.178 0.822 23 H 0.160 0.840 24 H 0.038 0.962 25 H 0.052 0.948 26 H 0.048 0.952 27 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.308 -8.163 -2.128 8.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.225 6.225 3 C -0.050 4.050 4 C -0.109 4.109 5 C -0.191 4.191 6 C 0.024 3.976 7 N -0.129 5.129 8 C 0.000 4.000 9 C -0.465 4.465 10 H 0.126 0.874 11 C -0.212 4.212 12 N -0.535 5.535 13 Si 0.825 3.175 14 H -0.191 1.191 15 H -0.208 1.208 16 H -0.185 1.185 17 N -0.210 5.210 18 N -0.131 5.131 19 H 0.146 0.854 20 H 0.064 0.936 21 H 0.066 0.934 22 H 0.195 0.805 23 H 0.177 0.823 24 H 0.056 0.944 25 H 0.070 0.930 26 H 0.067 0.933 27 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.566 -7.288 -2.018 7.723 hybrid contribution 1.657 0.116 0.063 1.663 sum 0.091 -7.172 -1.955 7.434 Atomic orbital electron populations 1.22971 0.76858 1.04397 1.01471 1.86092 1.23345 1.22984 1.90067 1.21129 0.91491 0.86691 1.05710 1.21465 0.91827 0.99040 0.98600 1.21813 1.01961 0.90382 1.04987 1.20388 0.91290 0.88259 0.97657 1.42467 1.06052 1.00528 1.63838 1.21157 0.91344 0.87112 1.00421 1.19960 0.81781 1.06561 1.38244 0.87409 1.26352 1.04487 0.96055 0.94348 1.70215 1.39126 1.12482 1.31719 0.84844 0.76094 0.77861 0.78743 1.19076 1.20816 1.18506 1.72523 1.09378 1.13533 1.25595 1.72344 1.32747 0.94496 1.13486 0.85374 0.93561 0.93414 0.80466 0.82297 0.94360 0.92960 0.93303 0.91689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.00 10.40 113.37 1.18 2.18 15 2 O -0.32 -10.65 10.49 -90.69 -0.95 -11.60 15 3 C 0.14 5.64 7.58 84.92 0.64 6.29 15 4 C -0.08 -2.91 10.15 22.59 0.23 -2.68 15 5 C -0.16 -6.44 9.34 22.65 0.21 -6.23 15 6 C 0.27 13.06 7.42 133.19 0.99 14.05 15 7 N -0.43 -22.22 3.12 -540.74 -1.69 -23.91 15 8 C 0.14 7.17 8.79 127.77 1.12 8.29 15 9 C -0.34 -16.83 8.93 84.04 0.75 -16.08 15 10 H 0.11 4.95 6.38 -2.91 -0.02 4.93 15 11 C -0.01 -0.47 5.14 84.86 0.44 -0.03 15 12 N -0.90 -46.89 10.64 21.65 0.23 -46.66 15 13 Si 1.00 38.21 29.57 68.60 2.03 40.23 15 14 H -0.27 -9.83 7.11 99.48 0.71 -9.12 15 15 H -0.28 -10.76 7.11 99.48 0.71 -10.05 15 16 H -0.26 -9.44 7.11 99.48 0.71 -8.74 15 17 N -0.35 -17.25 10.20 -55.03 -0.56 -17.81 15 18 N -0.28 -12.42 10.39 -170.16 -1.77 -14.19 15 19 H 0.13 2.27 8.14 -2.39 -0.02 2.25 15 20 H 0.05 1.27 8.11 -2.39 -0.02 1.25 15 21 H 0.05 1.30 8.11 -2.39 -0.02 1.28 15 22 H 0.18 4.76 8.06 -2.91 -0.02 4.73 15 23 H 0.16 5.96 6.40 -2.91 -0.02 5.95 15 24 H 0.04 2.02 7.41 -2.39 -0.02 2.00 15 25 H 0.05 2.62 7.25 -2.38 -0.02 2.61 15 26 H 0.05 2.32 7.21 -2.38 -0.02 2.31 15 27 H 0.27 13.46 8.31 -92.71 -0.77 12.69 15 Total: -1.00 -60.10 238.84 4.03 -56.07 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: 1.18 Total: 12.09 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: 5.56 Total: 5.79 kcal Atomic # 7 Polarization: -98.79 SS G_CDS: -3.79 Total: -102.57 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: -0.95 Total: -11.60 kcal Atomic # 14 Polarization: 38.21 SS G_CDS: 2.03 Total: 40.23 kcal Total: -60.10 4.03 -56.07 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260295158.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.235 kcal (2) G-P(sol) polarization free energy of solvation -60.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.065 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds