Wall clock time and date at job start Sun Mar 29 2020 21:32:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35546 * 117.00271 * 2 1 4 4 C 1.38985 * 120.47141 * 180.02562 * 3 2 1 5 5 C 1.39294 * 118.26898 * 180.02562 * 4 3 2 6 6 N 1.38584 * 120.49904 * 179.97438 * 5 4 3 7 7 C 1.46504 * 119.99892 * 185.00117 * 6 5 4 8 8 C 1.36938 * 120.00201 * 5.00668 * 6 5 4 9 9 H 1.07998 * 119.99899 * 332.68699 * 8 6 5 10 10 C 1.38847 * 120.00175 * 152.69095 * 8 6 5 11 11 N 1.31529 * 120.00001 * 158.95001 * 10 8 6 12 12 Si 1.86798 * 119.99858 * 339.22079 * 10 8 6 13 13 H 1.48507 * 109.47215 * 84.67600 * 12 10 8 14 14 H 1.48498 * 109.47429 * 204.67886 * 12 10 8 15 15 H 1.48507 * 109.47251 * 324.67894 * 12 10 8 16 16 N 1.33208 * 118.99884 * 0.25260 * 5 4 3 17 17 C 1.31691 * 120.83145 * 359.48461 * 16 5 4 18 18 N 1.31804 * 121.90915 * 0.53025 * 17 16 5 19 19 H 1.08990 * 109.47250 * 60.00575 * 1 2 3 20 20 H 1.09002 * 109.47000 * 180.02562 * 1 2 3 21 21 H 1.08997 * 109.47020 * 299.99908 * 1 2 3 22 22 H 1.07998 * 120.86179 * 0.04210 * 4 3 2 23 23 H 1.09001 * 109.47097 * 270.01757 * 7 6 5 24 24 H 1.09001 * 109.47027 * 30.01565 * 7 6 5 25 25 H 1.08998 * 109.47480 * 150.01518 * 7 6 5 26 26 H 0.97006 * 120.00186 * 179.97438 * 11 10 8 27 27 H 1.07999 * 119.04316 * 180.25924 * 17 16 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0444 1.2077 0.0000 4 6 3.4317 1.2918 -0.0005 5 6 4.0160 2.5563 0.0000 6 7 5.3949 2.6939 0.0001 7 6 5.9983 4.0243 0.1113 8 6 6.1936 1.5864 -0.1039 9 1 5.8372 0.6289 0.2461 10 6 7.4616 1.6945 -0.6593 11 7 8.3732 0.7826 -0.3997 12 14 7.8750 3.1390 -1.7691 13 1 8.2877 4.2990 -0.9387 14 1 8.9859 2.7619 -2.6795 15 1 6.6801 3.5049 -2.5714 16 7 3.2292 3.6312 0.0062 17 6 1.9181 3.5080 0.0015 18 7 1.3291 2.3289 0.0010 19 1 -0.3633 0.5137 -0.8899 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 4.0408 0.3999 -0.0016 23 1 6.1388 4.4439 -0.8848 24 1 5.3416 4.6738 0.6899 25 1 6.9635 3.9449 0.6115 26 1 9.2589 0.8578 -0.7880 27 1 1.3078 4.3990 0.0025 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261082604.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:53 Heat of formation + Delta-G solvation = 32.025989 kcal Electronic energy + Delta-G solvation = -13542.972588 eV Core-core repulsion = 11109.412365 eV Total energy + Delta-G solvation = -2433.560223 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.090 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.11830 -37.96636 -36.33683 -32.59316 -31.29487 -30.49843 -27.31139 -26.41843 -24.72917 -23.05651 -21.22152 -18.21303 -17.29999 -16.74348 -15.78740 -15.49720 -14.73221 -14.34514 -14.15530 -13.90366 -13.31496 -13.01736 -12.71834 -12.58991 -11.79078 -11.59832 -11.14541 -10.73814 -10.64436 -10.44471 -9.77462 -9.55673 -9.10420 -8.45008 -8.42305 -7.33776 -6.66706 -4.08293 2.07028 2.30963 2.99765 3.15071 3.18654 3.54126 3.96892 4.24193 4.60817 4.93723 4.97659 5.36345 5.53638 5.60193 5.85696 5.96665 6.06424 6.16301 6.36960 6.43596 6.60852 6.80668 7.31194 7.70831 7.91017 8.02726 8.35023 8.90021 9.00832 9.38007 10.42704 Molecular weight = 209.09amu Principal moments of inertia in cm(-1) A = 0.046460 B = 0.009744 C = 0.008493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.528017 B = 2872.850551 C = 3296.145711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 O -0.311 6.311 3 C 0.365 3.635 4 C -0.309 4.309 5 C 0.408 3.592 6 N -0.425 5.425 7 C 0.073 3.927 8 C -0.323 4.323 9 H 0.116 0.884 10 C 0.061 3.939 11 N -0.850 5.850 12 Si 0.892 3.108 13 H -0.271 1.271 14 H -0.288 1.288 15 H -0.267 1.267 16 N -0.613 5.613 17 C 0.357 3.643 18 N -0.650 5.650 19 H 0.054 0.946 20 H 0.087 0.913 21 H 0.054 0.946 22 H 0.142 0.858 23 H 0.043 0.957 24 H 0.076 0.924 25 H 0.074 0.926 26 H 0.280 0.720 27 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.306 3.121 0.042 8.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.217 6.217 3 C 0.186 3.814 4 C -0.340 4.340 5 C 0.165 3.835 6 N -0.117 5.117 7 C -0.070 4.070 8 C -0.451 4.451 9 H 0.133 0.867 10 C -0.148 4.148 11 N -0.483 5.483 12 Si 0.719 3.281 13 H -0.197 1.197 14 H -0.215 1.215 15 H -0.192 1.192 16 N -0.344 5.344 17 C 0.065 3.935 18 N -0.390 5.390 19 H 0.073 0.927 20 H 0.105 0.895 21 H 0.073 0.927 22 H 0.159 0.841 23 H 0.061 0.939 24 H 0.095 0.905 25 H 0.092 0.908 26 H 0.090 0.910 27 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -8.139 3.485 0.038 8.854 hybrid contribution 0.601 0.010 -0.639 0.878 sum -7.538 3.495 -0.602 8.330 Atomic orbital electron populations 1.22707 0.78342 1.01911 1.02080 1.86187 1.22014 1.25475 1.88011 1.19576 0.88869 0.84178 0.88740 1.20764 0.91775 0.99172 1.22295 1.18157 0.85489 0.88034 0.91808 1.42512 1.00188 1.06461 1.62528 1.21945 0.99184 0.85138 1.00721 1.19221 0.95930 0.89385 1.40564 0.86706 1.25283 0.95096 0.97896 0.96484 1.69777 1.03774 1.35229 1.39555 0.86886 0.78300 0.81627 0.81243 1.19688 1.21515 1.19180 1.67842 1.06183 1.32739 1.27681 1.23861 0.87553 0.93339 0.88752 1.67890 1.41166 0.98803 1.31150 0.92721 0.89469 0.92743 0.84072 0.93924 0.90545 0.90758 0.90957 0.80252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.63 10.41 101.05 1.05 1.68 15 2 O -0.31 -5.87 10.49 -18.33 -0.19 -6.07 15 3 C 0.37 7.70 7.52 -16.77 -0.13 7.58 15 4 C -0.31 -7.15 9.33 -38.91 -0.36 -7.51 15 5 C 0.41 9.65 7.35 -154.67 -1.14 8.51 15 6 N -0.43 -10.35 2.87 -122.27 -0.35 -10.70 15 7 C 0.07 1.56 8.07 59.85 0.48 2.04 15 8 C -0.32 -8.53 9.40 -15.05 -0.14 -8.67 15 9 H 0.12 3.21 6.43 -52.49 -0.34 2.87 15 10 C 0.06 1.60 5.23 -17.46 -0.09 1.51 15 11 N -0.85 -23.10 13.96 55.49 0.77 -22.32 15 12 Si 0.89 20.16 24.02 -169.99 -4.08 16.08 15 13 H -0.27 -5.70 6.54 56.52 0.37 -5.33 15 14 H -0.29 -6.47 7.11 56.52 0.40 -6.07 15 15 H -0.27 -6.21 6.88 56.52 0.39 -5.83 15 16 N -0.61 -13.19 9.31 -13.85 -0.13 -13.31 15 17 C 0.36 6.72 12.28 -92.23 -1.13 5.59 15 18 N -0.65 -12.81 9.38 -14.71 -0.14 -12.95 15 19 H 0.05 0.75 8.12 -51.93 -0.42 0.32 15 20 H 0.09 0.93 8.14 -51.93 -0.42 0.51 15 21 H 0.05 0.74 8.12 -51.93 -0.42 0.32 15 22 H 0.14 3.35 6.29 -52.49 -0.33 3.02 15 23 H 0.04 0.90 5.24 -51.93 -0.27 0.63 15 24 H 0.08 1.48 7.48 -51.93 -0.39 1.10 15 25 H 0.07 1.55 6.51 -51.93 -0.34 1.21 15 26 H 0.28 7.05 8.31 -40.82 -0.34 6.71 15 27 H 0.18 2.57 8.06 -52.49 -0.42 2.15 15 LS Contribution 232.83 15.07 3.51 3.51 Total: -1.00 -28.83 232.83 -4.60 -33.43 By element: Atomic # 1 Polarization: 4.14 SS G_CDS: -2.53 Total: 1.61 kcal Atomic # 6 Polarization: 12.18 SS G_CDS: -1.46 Total: 10.72 kcal Atomic # 7 Polarization: -59.44 SS G_CDS: 0.16 Total: -59.29 kcal Atomic # 8 Polarization: -5.87 SS G_CDS: -0.19 Total: -6.07 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -4.08 Total: 16.08 kcal Total LS contribution 3.51 Total: 3.51 kcal Total: -28.83 -4.60 -33.43 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261082604.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.456 kcal (2) G-P(sol) polarization free energy of solvation -28.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds