Wall clock time and date at job start Sun Mar 29 2020 21:32:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35546 * 117.00271 * 2 1 4 4 C 1.38985 * 120.47141 * 180.02562 * 3 2 1 5 5 C 1.39294 * 118.26898 * 180.02562 * 4 3 2 6 6 N 1.38584 * 120.49904 * 179.97438 * 5 4 3 7 7 C 1.46504 * 119.99892 * 185.00117 * 6 5 4 8 8 C 1.36938 * 120.00201 * 5.00668 * 6 5 4 9 9 H 1.07998 * 119.99899 * 332.68699 * 8 6 5 10 10 C 1.38847 * 120.00175 * 152.69095 * 8 6 5 11 11 N 1.31529 * 120.00001 * 158.95001 * 10 8 6 12 12 Si 1.86798 * 119.99858 * 339.22079 * 10 8 6 13 13 H 1.48507 * 109.47215 * 84.67600 * 12 10 8 14 14 H 1.48498 * 109.47429 * 204.67886 * 12 10 8 15 15 H 1.48507 * 109.47251 * 324.67894 * 12 10 8 16 16 N 1.33208 * 118.99884 * 0.25260 * 5 4 3 17 17 C 1.31691 * 120.83145 * 359.48461 * 16 5 4 18 18 N 1.31804 * 121.90915 * 0.53025 * 17 16 5 19 19 H 1.08990 * 109.47250 * 60.00575 * 1 2 3 20 20 H 1.09002 * 109.47000 * 180.02562 * 1 2 3 21 21 H 1.08997 * 109.47020 * 299.99908 * 1 2 3 22 22 H 1.07998 * 120.86179 * 0.04210 * 4 3 2 23 23 H 1.09001 * 109.47097 * 270.01757 * 7 6 5 24 24 H 1.09001 * 109.47027 * 30.01565 * 7 6 5 25 25 H 1.08998 * 109.47480 * 150.01518 * 7 6 5 26 26 H 0.97006 * 120.00186 * 179.97438 * 11 10 8 27 27 H 1.07999 * 119.04316 * 180.25924 * 17 16 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0444 1.2077 0.0000 4 6 3.4317 1.2918 -0.0005 5 6 4.0160 2.5563 0.0000 6 7 5.3949 2.6939 0.0001 7 6 5.9983 4.0243 0.1113 8 6 6.1936 1.5864 -0.1039 9 1 5.8372 0.6289 0.2461 10 6 7.4616 1.6945 -0.6593 11 7 8.3732 0.7826 -0.3997 12 14 7.8750 3.1390 -1.7691 13 1 8.2877 4.2990 -0.9387 14 1 8.9859 2.7619 -2.6795 15 1 6.6801 3.5049 -2.5714 16 7 3.2292 3.6312 0.0062 17 6 1.9181 3.5080 0.0015 18 7 1.3291 2.3289 0.0010 19 1 -0.3633 0.5137 -0.8899 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 4.0408 0.3999 -0.0016 23 1 6.1388 4.4439 -0.8848 24 1 5.3416 4.6738 0.6899 25 1 6.9635 3.9449 0.6115 26 1 9.2589 0.8578 -0.7880 27 1 1.3078 4.3990 0.0025 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261082604.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:53 Heat of formation + Delta-G solvation = 11.898643 kcal Electronic energy + Delta-G solvation = -13543.845375 eV Core-core repulsion = 11109.412365 eV Total energy + Delta-G solvation = -2434.433010 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.090 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.77485 -39.54530 -38.05337 -34.49224 -32.99035 -32.18146 -28.79629 -28.04073 -26.46046 -24.71455 -22.91963 -19.91763 -19.06943 -18.42661 -17.57396 -16.97557 -16.41646 -15.96073 -15.84795 -15.53475 -14.87130 -14.65142 -14.50908 -14.32738 -13.50988 -12.82434 -12.58651 -12.57155 -12.41859 -12.11882 -11.46935 -11.30886 -10.96392 -10.11840 -10.08190 -9.16079 -8.62589 -6.08895 0.41307 0.58584 1.22427 1.34606 1.41367 2.03698 2.11195 2.53529 2.74969 3.21755 3.49593 3.74673 4.29493 4.41220 4.44219 4.49751 4.52748 4.67716 4.75496 4.77199 4.91828 5.19492 5.49603 5.81292 6.19559 6.34397 6.50222 7.04376 7.15471 7.61465 8.51354 Molecular weight = 209.09amu Principal moments of inertia in cm(-1) A = 0.046460 B = 0.009744 C = 0.008493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.528017 B = 2872.850551 C = 3296.145711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.323 6.323 3 C 0.375 3.625 4 C -0.342 4.342 5 C 0.406 3.594 6 N -0.446 5.446 7 C 0.074 3.926 8 C -0.335 4.335 9 H 0.080 0.920 10 C 0.021 3.979 11 N -0.894 5.894 12 Si 0.950 3.050 13 H -0.241 1.241 14 H -0.286 1.286 15 H -0.276 1.276 16 N -0.619 5.619 17 C 0.363 3.637 18 N -0.640 5.640 19 H 0.059 0.941 20 H 0.123 0.877 21 H 0.060 0.940 22 H 0.120 0.880 23 H 0.048 0.952 24 H 0.094 0.906 25 H 0.074 0.926 26 H 0.285 0.715 27 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.082 4.928 -0.296 11.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.229 6.229 3 C 0.194 3.806 4 C -0.373 4.373 5 C 0.163 3.837 6 N -0.140 5.140 7 C -0.069 4.069 8 C -0.463 4.463 9 H 0.098 0.902 10 C -0.184 4.184 11 N -0.530 5.530 12 Si 0.774 3.226 13 H -0.165 1.165 14 H -0.213 1.213 15 H -0.202 1.202 16 N -0.350 5.350 17 C 0.072 3.928 18 N -0.379 5.379 19 H 0.078 0.922 20 H 0.141 0.859 21 H 0.079 0.921 22 H 0.138 0.862 23 H 0.066 0.934 24 H 0.112 0.888 25 H 0.093 0.907 26 H 0.095 0.905 27 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -9.958 5.296 -0.284 11.283 hybrid contribution 0.829 -0.630 -0.488 1.150 sum -9.130 4.666 -0.772 10.282 Atomic orbital electron populations 1.23092 0.75391 1.04573 1.02573 1.86186 1.24910 1.24505 1.87301 1.19654 0.88414 0.85347 0.87200 1.20790 0.93027 0.98701 1.24807 1.18418 0.85720 0.88765 0.90767 1.42512 1.00385 1.06792 1.64295 1.22035 0.99563 0.83969 1.01283 1.18984 0.96694 0.89294 1.41310 0.90237 1.25908 0.94656 1.00560 0.97242 1.69852 1.04442 1.37502 1.41166 0.85972 0.77532 0.79605 0.79443 1.16506 1.21304 1.20168 1.67950 1.07135 1.31644 1.28271 1.24954 0.87143 0.94623 0.86048 1.68068 1.40613 0.98670 1.30510 0.92198 0.85912 0.92136 0.86230 0.93412 0.88762 0.90699 0.90513 0.75157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.96 10.41 113.37 1.18 2.14 15 2 O -0.32 -11.81 10.49 -88.51 -0.93 -12.73 15 3 C 0.37 15.40 7.52 84.70 0.64 16.04 15 4 C -0.34 -16.11 9.33 22.70 0.21 -15.90 15 5 C 0.41 19.09 7.35 133.00 0.98 20.06 15 6 N -0.45 -21.82 2.87 -540.76 -1.55 -23.37 15 7 C 0.07 3.03 8.07 127.77 1.03 4.06 15 8 C -0.33 -18.34 9.40 84.04 0.79 -17.55 15 9 H 0.08 4.78 6.43 -2.91 -0.02 4.76 15 10 C 0.02 1.13 5.23 84.88 0.44 1.58 15 11 N -0.89 -50.11 13.96 21.65 0.30 -49.80 15 12 Si 0.95 41.31 24.02 68.60 1.65 42.96 15 13 H -0.24 -9.27 6.54 99.48 0.65 -8.61 15 14 H -0.29 -12.23 7.11 99.48 0.71 -11.52 15 15 H -0.28 -12.33 6.88 99.48 0.68 -11.65 15 16 N -0.62 -25.20 9.31 -197.73 -1.84 -27.04 15 17 C 0.36 12.37 12.28 180.91 2.22 14.60 15 18 N -0.64 -23.39 9.38 -313.02 -2.94 -26.32 15 19 H 0.06 1.46 8.12 -2.39 -0.02 1.44 15 20 H 0.12 2.21 8.14 -2.39 -0.02 2.19 15 21 H 0.06 1.46 8.12 -2.39 -0.02 1.44 15 22 H 0.12 6.07 6.29 -2.91 -0.02 6.05 15 23 H 0.05 1.90 5.24 -2.39 -0.01 1.89 15 24 H 0.09 3.46 7.48 -2.39 -0.02 3.45 15 25 H 0.07 3.02 6.51 -2.39 -0.02 3.00 15 26 H 0.28 14.68 8.31 -92.70 -0.77 13.91 15 27 H 0.23 5.35 8.06 -2.91 -0.02 5.32 15 Total: -1.00 -62.92 232.83 3.29 -59.63 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: 1.11 Total: 11.67 kcal Atomic # 6 Polarization: 17.53 SS G_CDS: 7.49 Total: 25.02 kcal Atomic # 7 Polarization: -120.51 SS G_CDS: -6.02 Total: -126.54 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: -0.93 Total: -12.73 kcal Atomic # 14 Polarization: 41.31 SS G_CDS: 1.65 Total: 42.96 kcal Total: -62.92 3.29 -59.63 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261082604.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.527 kcal (2) G-P(sol) polarization free energy of solvation -62.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds