Wall clock time and date at job start Sun Mar 29 2020 21:26:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35554 * 116.99765 * 2 1 4 4 N 1.32998 * 120.46475 * 359.97438 * 3 2 1 5 5 C 1.31779 * 120.92778 * 180.02562 * 4 3 2 6 6 N 1.31717 * 121.90800 * 359.97438 * 5 4 3 7 7 C 1.33186 * 120.82884 * 0.02562 * 6 5 4 8 8 N 1.38577 * 120.50053 * 180.27111 * 7 6 5 9 9 C 1.36944 * 120.00221 * 359.72618 * 8 7 6 10 10 H 1.08001 * 119.99876 * 359.97438 * 9 8 7 11 11 C 1.38841 * 120.00174 * 179.97438 * 9 8 7 12 12 N 1.31537 * 120.00267 * 359.97438 * 11 9 8 13 13 Si 1.86805 * 119.99859 * 179.97438 * 11 9 8 14 14 H 1.48493 * 109.47252 * 359.97438 * 13 11 9 15 15 H 1.48497 * 109.47048 * 120.00197 * 13 11 9 16 16 H 1.48500 * 109.46959 * 239.99976 * 13 11 9 17 17 C 1.38944 * 120.46336 * 180.02562 * 3 2 1 18 18 C 1.50697 * 120.86859 * 0.02562 * 17 3 2 19 19 H 1.09001 * 109.47387 * 299.99487 * 1 2 3 20 20 H 1.09001 * 109.47338 * 60.00104 * 1 2 3 21 21 H 1.09005 * 109.46783 * 179.97438 * 1 2 3 22 22 H 1.07998 * 119.05073 * 180.02562 * 5 4 3 23 23 H 0.97007 * 120.00403 * 179.71876 * 8 7 6 24 24 H 0.96994 * 120.00343 * 179.97438 * 12 11 9 25 25 H 1.08995 * 109.47133 * 269.97719 * 18 17 3 26 26 H 1.09000 * 109.47279 * 29.98074 * 18 17 3 27 27 H 1.09006 * 109.47140 * 149.97546 * 18 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2078 0.0000 4 7 1.3290 2.3290 -0.0005 5 6 1.9177 3.5080 -0.0010 6 7 3.2291 3.6314 -0.0005 7 6 4.0157 2.5566 0.0000 8 7 5.3946 2.6943 0.0061 9 6 5.9582 3.9424 0.0060 10 1 5.3280 4.8195 0.0008 11 6 7.3397 4.0803 0.0127 12 7 8.1073 3.0122 0.0197 13 14 8.1084 5.7829 0.0119 14 1 7.0361 6.8101 0.0030 15 1 8.9439 5.9494 1.2282 16 1 8.9563 5.9426 -1.1967 17 6 3.4312 1.2918 -0.0005 18 6 4.2812 0.0474 -0.0017 19 1 -0.3634 0.5137 0.8900 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 1.3073 4.3990 -0.0010 23 1 5.9607 1.9066 0.0106 24 1 9.0725 3.1085 0.0240 25 1 4.4869 -0.2530 1.0256 26 1 3.7508 -0.7544 -0.5155 27 1 5.2207 0.2496 -0.5162 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261109000.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:26:58 Heat of formation + Delta-G solvation = 5.796609 kcal Electronic energy + Delta-G solvation = -13414.022074 eV Core-core repulsion = 10979.324459 eV Total energy + Delta-G solvation = -2434.697614 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.090 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.03900 -37.76112 -35.58915 -32.76332 -31.85817 -30.22873 -27.22637 -26.31952 -24.83251 -21.87332 -21.56787 -18.43210 -17.99719 -16.46016 -15.50220 -15.39983 -14.62184 -14.06692 -13.63235 -13.38943 -13.36373 -13.10617 -12.17626 -11.75061 -11.67651 -11.63566 -11.46793 -11.10406 -10.53803 -10.51350 -10.39353 -9.54690 -9.12347 -8.23095 -8.12104 -7.34814 -6.69306 -3.90248 2.15651 2.47465 3.14679 3.15052 3.21657 3.63550 4.01394 4.70615 4.78012 5.10481 5.20376 5.54507 5.63453 5.72848 5.89362 5.97524 6.00418 6.24246 6.34322 6.77076 6.79960 7.08695 7.35036 7.58219 7.99484 8.16945 8.64170 9.10824 9.14827 9.64069 10.46383 Molecular weight = 209.09amu Principal moments of inertia in cm(-1) A = 0.060264 B = 0.008205 C = 0.007260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 464.514043 B = 3411.688651 C = 3855.749104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 O -0.312 6.312 3 C 0.371 3.629 4 N -0.661 5.661 5 C 0.355 3.645 6 N -0.591 5.591 7 C 0.391 3.609 8 N -0.507 5.507 9 C -0.287 4.287 10 H 0.118 0.882 11 C 0.020 3.980 12 N -0.887 5.887 13 Si 0.939 3.061 14 H -0.264 1.264 15 H -0.279 1.279 16 H -0.279 1.279 17 C -0.317 4.317 18 C -0.073 4.073 19 H 0.053 0.947 20 H 0.053 0.947 21 H 0.085 0.915 22 H 0.178 0.822 23 H 0.409 0.591 24 H 0.278 0.722 25 H 0.050 0.950 26 H 0.058 0.942 27 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.362 -2.859 -0.047 7.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.218 6.218 3 C 0.192 3.808 4 N -0.401 5.401 5 C 0.063 3.937 6 N -0.321 5.321 7 C 0.142 3.858 8 N -0.114 5.114 9 C -0.418 4.418 10 H 0.135 0.865 11 C -0.185 4.185 12 N -0.524 5.524 13 Si 0.765 3.235 14 H -0.188 1.188 15 H -0.205 1.205 16 H -0.205 1.205 17 C -0.332 4.332 18 C -0.132 4.132 19 H 0.072 0.928 20 H 0.072 0.928 21 H 0.103 0.897 22 H 0.194 0.806 23 H 0.248 0.752 24 H 0.088 0.912 25 H 0.069 0.931 26 H 0.077 0.923 27 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.265 -2.260 -0.046 7.608 hybrid contribution 0.928 -0.176 0.002 0.945 sum -6.337 -2.435 -0.044 6.789 Atomic orbital electron populations 1.22678 0.78547 1.01643 1.02107 1.86134 1.21805 1.25716 1.88160 1.19247 0.88170 0.84239 0.89153 1.67880 1.40858 0.98676 1.32729 1.23885 0.87898 0.93165 0.88782 1.67889 1.05419 1.32294 1.26528 1.17812 0.85960 0.87393 0.94594 1.41010 1.00572 1.09755 1.60017 1.20123 0.90507 0.85288 1.45924 0.86478 1.25475 0.96168 1.00024 0.96798 1.69667 1.05938 1.29226 1.47609 0.85636 0.79067 0.80826 0.77947 1.18758 1.20475 1.20483 1.19298 0.91576 0.95596 1.26704 1.20107 0.97890 0.94414 1.00743 0.92787 0.92806 0.89683 0.80564 0.75243 0.91249 0.93081 0.92324 0.92804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.64 10.41 101.05 1.05 1.69 15 2 O -0.31 -5.71 9.66 -18.36 -0.18 -5.89 15 3 C 0.37 7.79 7.50 -16.79 -0.13 7.66 15 4 N -0.66 -13.52 9.38 -14.72 -0.14 -13.66 15 5 C 0.36 7.24 12.28 -92.23 -1.13 6.11 15 6 N -0.59 -13.92 9.24 -13.85 -0.13 -14.05 15 7 C 0.39 9.46 7.44 -154.68 -1.15 8.30 15 8 N -0.51 -12.81 5.34 -11.03 -0.06 -12.87 15 9 C -0.29 -7.55 9.72 -15.05 -0.15 -7.69 15 10 H 0.12 3.12 7.11 -52.49 -0.37 2.74 15 11 C 0.02 0.50 5.50 -17.45 -0.10 0.41 15 12 N -0.89 -23.24 13.05 55.49 0.72 -22.51 15 13 Si 0.94 19.87 29.55 -169.99 -5.02 14.85 15 14 H -0.26 -5.51 7.11 56.52 0.40 -5.11 15 15 H -0.28 -5.85 7.11 56.52 0.40 -5.45 15 16 H -0.28 -5.85 7.11 56.52 0.40 -5.45 15 17 C -0.32 -7.00 5.95 -103.95 -0.62 -7.62 15 18 C -0.07 -1.40 9.43 36.00 0.34 -1.06 15 19 H 0.05 0.75 8.12 -51.93 -0.42 0.32 15 20 H 0.05 0.74 8.12 -51.93 -0.42 0.32 15 21 H 0.08 0.89 8.14 -51.93 -0.42 0.47 15 22 H 0.18 2.86 8.06 -52.49 -0.42 2.44 15 23 H 0.41 10.20 6.02 -40.82 -0.25 9.95 15 24 H 0.28 6.81 8.31 -40.82 -0.34 6.47 15 25 H 0.05 0.93 8.14 -51.93 -0.42 0.50 15 26 H 0.06 1.03 7.62 -51.93 -0.40 0.63 15 27 H 0.05 1.03 6.68 -51.93 -0.35 0.68 15 LS Contribution 242.09 15.07 3.65 3.65 Total: -1.00 -28.51 242.09 -5.64 -34.15 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -2.61 Total: 8.54 kcal Atomic # 6 Polarization: 9.68 SS G_CDS: -1.88 Total: 7.80 kcal Atomic # 7 Polarization: -63.50 SS G_CDS: 0.40 Total: -63.10 kcal Atomic # 8 Polarization: -5.71 SS G_CDS: -0.18 Total: -5.89 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.02 Total: 14.85 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -28.51 -5.64 -34.15 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261109000.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.944 kcal (2) G-P(sol) polarization free energy of solvation -28.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds