Wall clock time and date at job start Sun Mar 29 2020 21:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35554 * 116.99765 * 2 1 4 4 N 1.32998 * 120.46475 * 359.97438 * 3 2 1 5 5 C 1.31779 * 120.92778 * 180.02562 * 4 3 2 6 6 N 1.31717 * 121.90800 * 359.97438 * 5 4 3 7 7 C 1.33186 * 120.82884 * 0.02562 * 6 5 4 8 8 N 1.38577 * 120.50053 * 180.27111 * 7 6 5 9 9 C 1.36944 * 120.00221 * 359.72618 * 8 7 6 10 10 H 1.08001 * 119.99876 * 359.97438 * 9 8 7 11 11 C 1.38841 * 120.00174 * 179.97438 * 9 8 7 12 12 N 1.31537 * 120.00267 * 359.97438 * 11 9 8 13 13 Si 1.86805 * 119.99859 * 179.97438 * 11 9 8 14 14 H 1.48493 * 109.47252 * 359.97438 * 13 11 9 15 15 H 1.48497 * 109.47048 * 120.00197 * 13 11 9 16 16 H 1.48500 * 109.46959 * 239.99976 * 13 11 9 17 17 C 1.38944 * 120.46336 * 180.02562 * 3 2 1 18 18 C 1.50697 * 120.86859 * 0.02562 * 17 3 2 19 19 H 1.09001 * 109.47387 * 299.99487 * 1 2 3 20 20 H 1.09001 * 109.47338 * 60.00104 * 1 2 3 21 21 H 1.09005 * 109.46783 * 179.97438 * 1 2 3 22 22 H 1.07998 * 119.05073 * 180.02562 * 5 4 3 23 23 H 0.97007 * 120.00403 * 179.71876 * 8 7 6 24 24 H 0.96994 * 120.00343 * 179.97438 * 12 11 9 25 25 H 1.08995 * 109.47133 * 269.97719 * 18 17 3 26 26 H 1.09000 * 109.47279 * 29.98074 * 18 17 3 27 27 H 1.09006 * 109.47140 * 149.97546 * 18 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2078 0.0000 4 7 1.3290 2.3290 -0.0005 5 6 1.9177 3.5080 -0.0010 6 7 3.2291 3.6314 -0.0005 7 6 4.0157 2.5566 0.0000 8 7 5.3946 2.6943 0.0061 9 6 5.9582 3.9424 0.0060 10 1 5.3280 4.8195 0.0008 11 6 7.3397 4.0803 0.0127 12 7 8.1073 3.0122 0.0197 13 14 8.1084 5.7829 0.0119 14 1 7.0361 6.8101 0.0030 15 1 8.9439 5.9494 1.2282 16 1 8.9563 5.9426 -1.1967 17 6 3.4312 1.2918 -0.0005 18 6 4.2812 0.0474 -0.0017 19 1 -0.3634 0.5137 0.8900 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 1.3073 4.3990 -0.0010 23 1 5.9607 1.9066 0.0106 24 1 9.0725 3.1085 0.0240 25 1 4.4869 -0.2530 1.0256 26 1 3.7508 -0.7544 -0.5155 27 1 5.2207 0.2496 -0.5162 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261109000.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:26:57 Heat of formation + Delta-G solvation = -12.856746 kcal Electronic energy + Delta-G solvation = -13414.830944 eV Core-core repulsion = 10979.324459 eV Total energy + Delta-G solvation = -2435.506484 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.090 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.71669 -39.30668 -37.35796 -34.53948 -33.54364 -32.01584 -28.54928 -27.95364 -26.61296 -23.56086 -23.23725 -20.25289 -19.60806 -18.17829 -17.07168 -16.96163 -16.41236 -15.61010 -15.23732 -15.08969 -15.02663 -14.63332 -13.73909 -13.47687 -13.34071 -13.21279 -12.76490 -12.65778 -12.35955 -12.06413 -12.06168 -11.23336 -10.93087 -9.92087 -9.85980 -9.12328 -8.56052 -5.85859 0.47313 0.73082 1.43440 1.48976 1.58302 2.13214 2.32992 2.89966 3.00809 3.39567 3.58328 4.08970 4.30543 4.34489 4.52697 4.57166 4.63214 4.81465 4.82627 5.16641 5.21607 5.33430 5.53331 5.77417 6.32259 6.48552 6.76267 7.26389 7.32624 7.85117 8.61147 Molecular weight = 209.09amu Principal moments of inertia in cm(-1) A = 0.060264 B = 0.008205 C = 0.007260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 464.514043 B = 3411.688651 C = 3855.749104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.315 6.315 3 C 0.371 3.629 4 N -0.650 5.650 5 C 0.355 3.645 6 N -0.619 5.619 7 C 0.385 3.615 8 N -0.528 5.528 9 C -0.312 4.312 10 H 0.106 0.894 11 C -0.022 4.022 12 N -0.920 5.920 13 Si 1.004 2.996 14 H -0.262 1.262 15 H -0.274 1.274 16 H -0.274 1.274 17 C -0.334 4.334 18 C -0.067 4.067 19 H 0.055 0.945 20 H 0.055 0.945 21 H 0.125 0.875 22 H 0.218 0.782 23 H 0.406 0.594 24 H 0.280 0.720 25 H 0.058 0.942 26 H 0.075 0.925 27 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.822 -2.984 -0.039 9.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.221 6.221 3 C 0.190 3.810 4 N -0.390 5.390 5 C 0.064 3.936 6 N -0.350 5.350 7 C 0.138 3.862 8 N -0.138 5.138 9 C -0.442 4.442 10 H 0.124 0.876 11 C -0.222 4.222 12 N -0.559 5.559 13 Si 0.827 3.173 14 H -0.185 1.185 15 H -0.200 1.200 16 H -0.200 1.200 17 C -0.348 4.348 18 C -0.125 4.125 19 H 0.073 0.927 20 H 0.073 0.927 21 H 0.143 0.857 22 H 0.235 0.765 23 H 0.244 0.756 24 H 0.090 0.910 25 H 0.077 0.923 26 H 0.094 0.906 27 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -8.793 -2.403 -0.038 9.116 hybrid contribution 1.052 -0.272 -0.001 1.086 sum -7.742 -2.675 -0.039 8.191 Atomic orbital electron populations 1.23042 0.75905 1.04409 1.02200 1.86137 1.24315 1.24098 1.87502 1.19448 0.88185 0.85250 0.88097 1.68015 1.40623 0.98692 1.31662 1.24728 0.87332 0.94534 0.87044 1.67935 1.06761 1.32670 1.27680 1.18242 0.85961 0.88569 0.93438 1.40969 1.00943 1.09291 1.62557 1.20158 0.91037 0.85472 1.47565 0.87585 1.26278 0.96150 1.03504 0.96288 1.69744 1.06166 1.30871 1.49117 0.84690 0.78053 0.76567 0.78023 1.18544 1.19965 1.19975 1.19633 0.92756 0.95851 1.26563 1.20087 0.97329 0.93726 1.01359 0.92664 0.92665 0.85718 0.76549 0.75649 0.91035 0.92336 0.90623 0.93470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.95 10.41 113.37 1.18 2.13 15 2 O -0.31 -10.66 9.66 -88.60 -0.86 -11.51 15 3 C 0.37 14.84 7.50 84.69 0.63 15.48 15 4 N -0.65 -25.11 9.38 -313.03 -2.94 -28.04 15 5 C 0.35 13.77 12.28 180.91 2.22 15.99 15 6 N -0.62 -28.88 9.24 -197.72 -1.83 -30.71 15 7 C 0.39 18.71 7.44 133.02 0.99 19.70 15 8 N -0.53 -27.36 5.34 -188.80 -1.01 -28.37 15 9 C -0.31 -16.77 9.72 84.04 0.82 -15.95 15 10 H 0.11 5.78 7.11 -2.91 -0.02 5.76 15 11 C -0.02 -1.12 5.50 84.88 0.47 -0.65 15 12 N -0.92 -49.16 13.05 21.65 0.28 -48.88 15 13 Si 1.00 41.08 29.55 68.60 2.03 43.11 15 14 H -0.26 -10.46 7.11 99.48 0.71 -9.75 15 15 H -0.27 -10.90 7.11 99.48 0.71 -10.19 15 16 H -0.27 -10.90 7.11 99.48 0.71 -10.20 15 17 C -0.33 -14.48 5.95 -19.43 -0.12 -14.60 15 18 C -0.07 -2.51 9.43 71.23 0.67 -1.84 15 19 H 0.05 1.35 8.12 -2.39 -0.02 1.33 15 20 H 0.05 1.35 8.12 -2.39 -0.02 1.33 15 21 H 0.12 2.08 8.14 -2.38 -0.02 2.06 15 22 H 0.22 6.37 8.06 -2.91 -0.02 6.35 15 23 H 0.41 20.90 6.02 -92.70 -0.56 20.34 15 24 H 0.28 13.96 8.31 -92.71 -0.77 13.19 15 25 H 0.06 2.08 8.14 -2.39 -0.02 2.06 15 26 H 0.07 2.52 7.62 -2.39 -0.02 2.50 15 27 H 0.05 1.81 6.68 -2.38 -0.02 1.80 15 Total: -1.00 -60.75 242.09 3.19 -57.56 By element: Atomic # 1 Polarization: 25.94 SS G_CDS: 0.64 Total: 26.57 kcal Atomic # 6 Polarization: 13.40 SS G_CDS: 6.87 Total: 20.27 kcal Atomic # 7 Polarization: -130.51 SS G_CDS: -5.49 Total: -136.00 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: -0.86 Total: -11.51 kcal Atomic # 14 Polarization: 41.08 SS G_CDS: 2.03 Total: 43.11 kcal Total: -60.75 3.19 -57.56 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261109000.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.708 kcal (2) G-P(sol) polarization free energy of solvation -60.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds