Wall clock time and date at job start Sun Mar 29 2020 21:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35959 * 117.00153 * 2 1 4 4 C 1.38650 * 120.88978 * 0.02562 * 3 2 1 5 5 N 1.32526 * 119.12303 * 180.02562 * 4 3 2 6 6 C 1.31774 * 121.07102 * 359.97438 * 5 4 3 7 7 N 1.31740 * 121.97763 * 0.02562 * 6 5 4 8 8 C 1.32986 * 120.74307 * 0.02562 * 7 6 5 9 9 N 1.38607 * 120.56762 * 179.97438 * 8 7 6 10 10 C 1.46499 * 120.00115 * 181.65940 * 9 8 7 11 11 C 1.36888 * 119.99887 * 1.66272 * 9 8 7 12 12 H 1.07998 * 120.00615 * 30.13908 * 11 9 8 13 13 C 1.38837 * 119.99885 * 210.13858 * 11 9 8 14 14 N 1.31557 * 119.99869 * 211.47971 * 13 11 9 15 15 Si 1.86798 * 120.00065 * 31.47964 * 13 11 9 16 16 H 1.48502 * 109.47223 * 94.75571 * 15 13 11 17 17 H 1.48498 * 109.47183 * 214.75701 * 15 13 11 18 18 H 1.48501 * 109.47108 * 334.75412 * 15 13 11 19 19 H 1.09000 * 109.46765 * 59.99883 * 1 2 3 20 20 H 1.09003 * 109.47150 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.47320 * 300.00471 * 1 2 3 22 22 H 1.08003 * 120.43422 * 359.97438 * 4 3 2 23 23 H 1.08005 * 119.01037 * 180.02562 * 6 5 4 24 24 H 1.09000 * 109.46840 * 57.66189 * 10 9 8 25 25 H 1.09004 * 109.47140 * 177.66068 * 10 9 8 26 26 H 1.09001 * 109.47480 * 297.66290 * 10 9 8 27 27 H 0.97004 * 119.99410 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.3093 2.3858 0.0005 5 7 1.9471 3.5475 0.0000 6 6 3.2638 3.6004 -0.0005 7 7 4.0058 2.5119 -0.0010 8 6 3.4443 1.3064 -0.0016 9 7 4.2285 0.1635 -0.0026 10 6 3.5972 -1.1580 -0.0399 11 6 5.5928 0.2696 0.0312 12 1 6.0571 1.1097 0.5263 13 6 6.3799 -0.7029 -0.5708 14 7 7.5641 -0.9903 -0.0753 15 14 5.7572 -1.6032 -2.0845 16 1 6.2682 -0.9304 -3.3058 17 1 6.2360 -3.0086 -2.0564 18 1 4.2723 -1.5863 -2.0946 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5139 0.8899 22 1 0.2298 2.3543 0.0005 23 1 3.7492 4.5653 -0.0005 24 1 2.9652 -1.2338 -0.9247 25 1 4.3680 -1.9279 -0.0769 26 1 2.9889 -1.2955 0.8540 27 1 8.1138 -1.6700 -0.4958 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261151965.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:55 Heat of formation + Delta-G solvation = 42.307478 kcal Electronic energy + Delta-G solvation = -13897.002408 eV Core-core repulsion = 11463.888024 eV Total energy + Delta-G solvation = -2433.114384 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.090 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.19278 -37.61512 -36.52954 -32.63279 -31.64452 -29.65188 -27.50297 -26.30129 -24.89604 -22.55665 -21.54630 -17.81900 -17.33455 -16.75309 -16.46462 -15.59186 -15.06810 -14.13931 -13.87064 -13.70532 -13.16041 -12.97087 -12.69464 -12.60133 -11.80944 -11.21021 -11.05428 -10.85114 -10.54377 -10.47886 -10.11587 -9.64070 -9.05384 -8.49450 -8.03960 -6.99127 -6.64759 -3.88233 2.02400 2.23744 3.06898 3.16826 3.24419 3.79211 3.99856 4.15846 4.64108 5.00667 5.10386 5.25057 5.32071 5.40305 5.65947 5.83033 5.87828 6.04858 6.26181 6.41408 6.53396 7.11542 7.21909 7.59467 8.08185 8.15653 8.46624 9.00260 9.20516 9.46763 10.44113 Molecular weight = 209.09amu Principal moments of inertia in cm(-1) A = 0.036349 B = 0.012716 C = 0.010308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.124741 B = 2201.358212 C = 2715.694288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.311 6.311 3 C -0.075 4.075 4 C 0.076 3.924 5 N -0.589 5.589 6 C 0.305 3.695 7 N -0.553 5.553 8 C 0.378 3.622 9 N -0.415 5.415 10 C 0.097 3.903 11 C -0.306 4.306 12 H 0.117 0.883 13 C 0.062 3.938 14 N -0.837 5.837 15 Si 0.855 3.145 16 H -0.277 1.277 17 H -0.280 1.280 18 H -0.247 1.247 19 H 0.046 0.954 20 H 0.091 0.909 21 H 0.047 0.953 22 H 0.145 0.855 23 H 0.179 0.821 24 H 0.062 0.938 25 H 0.069 0.931 26 H 0.058 0.942 27 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.655 -0.684 -0.960 10.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.223 6.223 3 C -0.132 4.132 4 C -0.081 4.081 5 N -0.315 5.315 6 C 0.014 3.986 7 N -0.282 5.282 8 C 0.131 3.869 9 N -0.108 5.108 10 C -0.046 4.046 11 C -0.435 4.435 12 H 0.135 0.865 13 C -0.147 4.147 14 N -0.469 5.469 15 Si 0.679 3.321 16 H -0.203 1.203 17 H -0.205 1.205 18 H -0.171 1.171 19 H 0.065 0.935 20 H 0.109 0.891 21 H 0.065 0.935 22 H 0.162 0.838 23 H 0.196 0.804 24 H 0.080 0.920 25 H 0.087 0.913 26 H 0.077 0.923 27 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -9.821 -0.486 -0.945 9.878 hybrid contribution -0.742 -1.124 -0.841 1.588 sum -10.562 -1.611 -1.786 10.833 Atomic orbital electron populations 1.22885 0.80687 1.02875 1.00545 1.86267 1.19497 1.25883 1.90645 1.19966 0.92562 0.86387 1.14260 1.22503 0.99181 0.87152 0.99244 1.68106 1.11263 1.27578 1.24569 1.24232 0.86292 0.96195 0.91896 1.68051 1.39356 0.96589 1.24197 1.18121 0.84074 0.88042 0.96666 1.42653 1.05407 1.01103 1.61589 1.22107 0.96936 0.84082 1.01522 1.19265 0.77946 1.11720 1.34578 0.86522 1.25362 0.95359 0.96352 0.97637 1.69950 1.11656 1.28931 1.36378 0.87416 0.81326 0.78815 0.84533 1.20340 1.20540 1.17107 0.93521 0.89091 0.93480 0.83800 0.80448 0.91955 0.91286 0.92335 0.91185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.84 101.05 0.99 1.32 15 2 O -0.31 -5.59 6.48 -19.61 -0.13 -5.71 15 3 C -0.08 -1.55 6.66 -38.72 -0.26 -1.81 15 4 C 0.08 1.44 10.30 -17.10 -0.18 1.26 15 5 N -0.59 -11.83 10.43 -14.54 -0.15 -11.98 15 6 C 0.30 6.26 12.27 -92.22 -1.13 5.13 15 7 N -0.55 -13.21 9.48 -13.68 -0.13 -13.34 15 8 C 0.38 9.04 7.36 -154.53 -1.14 7.90 15 9 N -0.42 -10.28 2.78 -122.09 -0.34 -10.62 15 10 C 0.10 2.05 6.82 59.85 0.41 2.46 15 11 C -0.31 -8.39 9.45 -15.07 -0.14 -8.53 15 12 H 0.12 3.51 7.76 -52.49 -0.41 3.10 15 13 C 0.06 1.66 4.94 -17.45 -0.09 1.57 15 14 N -0.84 -23.07 13.96 55.49 0.77 -22.30 15 15 Si 0.85 19.53 26.27 -169.99 -4.47 15.07 15 16 H -0.28 -6.54 7.11 56.52 0.40 -6.14 15 17 H -0.28 -6.19 7.11 56.52 0.40 -5.79 15 18 H -0.25 -5.37 4.73 56.52 0.27 -5.10 15 19 H 0.05 0.53 7.71 -51.93 -0.40 0.13 15 20 H 0.09 0.90 8.14 -51.93 -0.42 0.48 15 21 H 0.05 0.53 7.71 -51.93 -0.40 0.13 15 22 H 0.14 2.20 6.46 -52.48 -0.34 1.86 15 23 H 0.18 2.98 8.06 -52.48 -0.42 2.55 15 24 H 0.06 1.27 5.96 -51.93 -0.31 0.96 15 25 H 0.07 1.46 5.05 -51.93 -0.26 1.20 15 26 H 0.06 1.15 7.22 -51.93 -0.37 0.77 15 27 H 0.28 7.06 8.31 -40.82 -0.34 6.72 15 LS Contribution 228.39 15.07 3.44 3.44 Total: -1.00 -30.12 228.39 -5.14 -35.25 By element: Atomic # 1 Polarization: 3.49 SS G_CDS: -2.61 Total: 0.88 kcal Atomic # 6 Polarization: 10.83 SS G_CDS: -1.53 Total: 9.30 kcal Atomic # 7 Polarization: -58.38 SS G_CDS: 0.15 Total: -58.23 kcal Atomic # 8 Polarization: -5.59 SS G_CDS: -0.13 Total: -5.71 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -4.47 Total: 15.07 kcal Total LS contribution 3.44 Total: 3.44 kcal Total: -30.12 -5.14 -35.25 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261151965.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.559 kcal (2) G-P(sol) polarization free energy of solvation -30.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds