Wall clock time and date at job start Sun Mar 29 2020 21:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35959 * 117.00153 * 2 1 4 4 C 1.38650 * 120.88978 * 0.02562 * 3 2 1 5 5 N 1.32526 * 119.12303 * 180.02562 * 4 3 2 6 6 C 1.31774 * 121.07102 * 359.97438 * 5 4 3 7 7 N 1.31740 * 121.97763 * 0.02562 * 6 5 4 8 8 C 1.32986 * 120.74307 * 0.02562 * 7 6 5 9 9 N 1.38607 * 120.56762 * 179.97438 * 8 7 6 10 10 C 1.46499 * 120.00115 * 181.65940 * 9 8 7 11 11 C 1.36888 * 119.99887 * 1.66272 * 9 8 7 12 12 H 1.07998 * 120.00615 * 30.13908 * 11 9 8 13 13 C 1.38837 * 119.99885 * 210.13858 * 11 9 8 14 14 N 1.31557 * 119.99869 * 211.47971 * 13 11 9 15 15 Si 1.86798 * 120.00065 * 31.47964 * 13 11 9 16 16 H 1.48502 * 109.47223 * 94.75571 * 15 13 11 17 17 H 1.48498 * 109.47183 * 214.75701 * 15 13 11 18 18 H 1.48501 * 109.47108 * 334.75412 * 15 13 11 19 19 H 1.09000 * 109.46765 * 59.99883 * 1 2 3 20 20 H 1.09003 * 109.47150 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.47320 * 300.00471 * 1 2 3 22 22 H 1.08003 * 120.43422 * 359.97438 * 4 3 2 23 23 H 1.08005 * 119.01037 * 180.02562 * 6 5 4 24 24 H 1.09000 * 109.46840 * 57.66189 * 10 9 8 25 25 H 1.09004 * 109.47140 * 177.66068 * 10 9 8 26 26 H 1.09001 * 109.47480 * 297.66290 * 10 9 8 27 27 H 0.97004 * 119.99410 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.3093 2.3858 0.0005 5 7 1.9471 3.5475 0.0000 6 6 3.2638 3.6004 -0.0005 7 7 4.0058 2.5119 -0.0010 8 6 3.4443 1.3064 -0.0016 9 7 4.2285 0.1635 -0.0026 10 6 3.5972 -1.1580 -0.0399 11 6 5.5928 0.2696 0.0312 12 1 6.0571 1.1097 0.5263 13 6 6.3799 -0.7029 -0.5708 14 7 7.5641 -0.9903 -0.0753 15 14 5.7572 -1.6032 -2.0845 16 1 6.2682 -0.9304 -3.3058 17 1 6.2360 -3.0086 -2.0564 18 1 4.2723 -1.5863 -2.0946 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5139 0.8899 22 1 0.2298 2.3543 0.0005 23 1 3.7492 4.5653 -0.0005 24 1 2.9652 -1.2338 -0.9247 25 1 4.3680 -1.9279 -0.0769 26 1 2.9889 -1.2955 0.8540 27 1 8.1138 -1.6700 -0.4958 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261151965.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:55 Heat of formation + Delta-G solvation = 22.249457 kcal Electronic energy + Delta-G solvation = -13897.872189 eV Core-core repulsion = 11463.888024 eV Total energy + Delta-G solvation = -2433.984165 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.090 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.82260 -39.05264 -38.26503 -34.51660 -33.39397 -31.25063 -28.91614 -27.77087 -26.67833 -24.12780 -23.27803 -19.65134 -18.80848 -18.34330 -18.20303 -17.11027 -16.70414 -15.78189 -15.41088 -15.11066 -14.86132 -14.62581 -14.50136 -14.22646 -13.21317 -12.73324 -12.66939 -12.36536 -12.26559 -12.15142 -11.69558 -11.37003 -10.94342 -10.21503 -9.73822 -8.70934 -8.58306 -5.89085 0.41952 0.53883 1.25652 1.38271 1.42289 2.15333 2.41206 2.48464 2.79136 3.25861 3.64227 3.68114 4.11773 4.21980 4.40933 4.50987 4.55694 4.66116 4.80443 4.83326 4.94179 5.38953 5.58301 5.91883 6.19329 6.52541 6.61803 7.12539 7.32110 7.74117 8.54001 Molecular weight = 209.09amu Principal moments of inertia in cm(-1) A = 0.036349 B = 0.012716 C = 0.010308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.124741 B = 2201.358212 C = 2715.694288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.323 6.323 3 C -0.068 4.068 4 C 0.083 3.917 5 N -0.579 5.579 6 C 0.295 3.705 7 N -0.589 5.589 8 C 0.363 3.637 9 N -0.443 5.443 10 C 0.103 3.897 11 C -0.321 4.321 12 H 0.068 0.932 13 C 0.021 3.979 14 N -0.887 5.887 15 Si 0.918 3.082 16 H -0.290 1.290 17 H -0.267 1.267 18 H -0.227 1.227 19 H 0.061 0.939 20 H 0.119 0.881 21 H 0.061 0.939 22 H 0.189 0.811 23 H 0.209 0.791 24 H 0.072 0.928 25 H 0.063 0.937 26 H 0.070 0.930 27 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.969 -0.856 -1.732 14.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.236 6.236 3 C -0.125 4.125 4 C -0.075 4.075 5 N -0.303 5.303 6 C 0.006 3.994 7 N -0.318 5.318 8 C 0.117 3.883 9 N -0.140 5.140 10 C -0.039 4.039 11 C -0.450 4.450 12 H 0.086 0.914 13 C -0.184 4.184 14 N -0.522 5.522 15 Si 0.741 3.259 16 H -0.217 1.217 17 H -0.191 1.191 18 H -0.150 1.150 19 H 0.080 0.920 20 H 0.138 0.862 21 H 0.080 0.920 22 H 0.206 0.794 23 H 0.225 0.775 24 H 0.091 0.909 25 H 0.082 0.918 26 H 0.089 0.911 27 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -13.180 -0.627 -1.708 13.305 hybrid contribution -0.005 -0.837 -0.524 0.987 sum -13.185 -1.463 -2.233 13.453 Atomic orbital electron populations 1.23308 0.77382 1.05418 1.01910 1.86242 1.22699 1.24354 1.90284 1.19927 0.91443 0.88144 1.12953 1.23202 1.01093 0.86001 0.97241 1.68221 1.10962 1.28279 1.22885 1.24850 0.86647 0.96564 0.91378 1.68067 1.41257 0.97691 1.24785 1.18632 0.85907 0.87977 0.95776 1.42633 1.04363 1.02338 1.64658 1.22113 0.96716 0.82515 1.02521 1.18818 0.79769 1.10951 1.35483 0.91380 1.25962 0.95449 0.97375 0.99662 1.70017 1.13395 1.30787 1.38035 0.86427 0.81857 0.77933 0.79701 1.21676 1.19141 1.15004 0.92020 0.86246 0.91994 0.79410 0.77472 0.90925 0.91838 0.91136 0.90809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.28 9.84 113.37 1.12 1.40 15 2 O -0.32 -10.42 6.48 -93.09 -0.60 -11.03 15 3 C -0.07 -2.63 6.66 22.83 0.15 -2.48 15 4 C 0.08 2.79 10.30 84.69 0.87 3.66 15 5 N -0.58 -21.41 10.43 -199.92 -2.08 -23.49 15 6 C 0.30 11.66 12.27 180.91 2.22 13.88 15 7 N -0.59 -28.18 9.48 -197.18 -1.87 -30.05 15 8 C 0.36 17.17 7.36 133.26 0.98 18.15 15 9 N -0.44 -22.10 2.78 -540.18 -1.50 -23.60 15 10 C 0.10 4.26 6.82 127.77 0.87 5.13 15 11 C -0.32 -18.36 9.45 84.05 0.79 -17.57 15 12 H 0.07 4.41 7.76 -2.91 -0.02 4.39 15 13 C 0.02 1.13 4.94 84.88 0.42 1.55 15 14 N -0.89 -51.08 13.96 21.65 0.30 -50.78 15 15 Si 0.92 40.82 26.27 68.60 1.80 42.62 15 16 H -0.29 -13.33 7.11 99.48 0.71 -12.62 15 17 H -0.27 -11.14 7.11 99.48 0.71 -10.43 15 18 H -0.23 -9.22 4.73 99.48 0.47 -8.75 15 19 H 0.06 1.07 7.71 -2.39 -0.02 1.05 15 20 H 0.12 1.74 8.14 -2.39 -0.02 1.72 15 21 H 0.06 1.07 7.71 -2.39 -0.02 1.05 15 22 H 0.19 4.63 6.46 -2.91 -0.02 4.61 15 23 H 0.21 6.59 8.06 -2.91 -0.02 6.57 15 24 H 0.07 2.77 5.96 -2.39 -0.01 2.76 15 25 H 0.06 2.63 5.05 -2.39 -0.01 2.62 15 26 H 0.07 2.65 7.22 -2.39 -0.02 2.63 15 27 H 0.28 14.88 8.31 -92.71 -0.77 14.11 15 Total: -1.00 -67.30 228.39 4.42 -62.88 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: 0.95 Total: 9.72 kcal Atomic # 6 Polarization: 16.30 SS G_CDS: 7.43 Total: 23.73 kcal Atomic # 7 Polarization: -122.76 SS G_CDS: -5.15 Total: -127.91 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: -0.60 Total: -11.03 kcal Atomic # 14 Polarization: 40.82 SS G_CDS: 1.80 Total: 42.62 kcal Total: -67.30 4.42 -62.88 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261151965.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.126 kcal (2) G-P(sol) polarization free energy of solvation -67.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds