Wall clock time and date at job start Sun Mar 29 2020 21:26:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35172 * 126.04981 * 2 1 4 4 C 1.40514 * 107.87766 * 180.16007 * 3 2 1 5 5 N 1.39681 * 125.98926 * 179.83097 * 4 3 2 6 6 C 1.34773 * 120.00010 * 359.71615 * 5 4 3 7 7 O 1.21761 * 119.99868 * 0.02562 * 6 5 4 8 8 C 1.46111 * 120.00063 * 180.02562 * 6 5 4 9 9 H 1.07995 * 120.00194 * 353.65788 * 8 6 5 10 10 C 1.40128 * 119.99902 * 173.93251 * 8 6 5 11 11 N 1.30637 * 120.00089 * 6.15581 * 10 8 6 12 12 Si 1.86806 * 119.99855 * 186.15380 * 10 8 6 13 13 H 1.48500 * 109.47145 * 94.98378 * 12 10 8 14 14 H 1.48504 * 109.46793 * 214.98364 * 12 10 8 15 15 H 1.48493 * 109.47136 * 334.98516 * 12 10 8 16 16 N 1.31415 * 108.02419 * 359.57117 * 4 3 2 17 17 N 1.35068 * 126.04855 * 179.68858 * 2 1 3 18 18 C 1.46500 * 125.96766 * 0.02904 * 17 2 1 19 19 H 1.09004 * 109.47131 * 270.31736 * 1 2 3 20 20 H 1.09003 * 109.47493 * 30.31015 * 1 2 3 21 21 H 1.09003 * 109.47643 * 150.31323 * 1 2 3 22 22 H 1.07996 * 126.06479 * 0.03293 * 3 2 1 23 23 H 0.96999 * 119.99398 * 179.72165 * 5 4 3 24 24 H 0.97004 * 119.99634 * 180.02562 * 11 10 8 25 25 H 1.09000 * 109.47085 * 269.97774 * 18 17 2 26 26 H 1.09002 * 109.47284 * 29.98791 * 18 17 2 27 27 H 1.09005 * 109.46858 * 149.98320 * 18 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3024 1.0929 0.0000 4 6 3.6375 0.6546 -0.0037 5 7 4.7698 1.4725 -0.0083 6 6 4.6327 2.8132 -0.0152 7 8 3.5217 3.3115 -0.0170 8 6 5.8172 3.6687 -0.0205 9 1 6.7993 3.2319 0.0844 10 6 5.6784 5.0565 -0.1559 11 7 4.4892 5.5971 -0.1565 12 14 7.1942 6.1335 -0.3356 13 1 7.4612 6.3759 -1.7761 14 1 6.9639 7.4304 0.3503 15 1 8.3621 5.4505 0.2762 16 7 3.6341 -0.6595 0.0035 17 7 2.3018 -1.0920 0.0059 18 6 1.8495 -2.4854 0.0129 19 1 -0.3633 0.0057 1.0277 20 1 -0.3634 0.8872 -0.5186 21 1 -0.3634 -0.8928 -0.5090 22 1 1.9708 2.1206 0.0005 23 1 5.6548 1.0754 -0.0066 24 1 4.3932 6.5578 -0.2506 25 1 1.7373 -2.8259 1.0423 26 1 0.8909 -2.5589 -0.5008 27 1 2.5839 -3.1084 -0.4977 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300784701.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:26:35 Heat of formation + Delta-G solvation = 39.424270 kcal Electronic energy + Delta-G solvation = -13289.548857 eV Core-core repulsion = 10856.309447 eV Total energy + Delta-G solvation = -2433.239409 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.090 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.49052 -37.41278 -33.82686 -32.52705 -31.45985 -31.27158 -26.84600 -26.42288 -25.21921 -21.30963 -19.54076 -19.02141 -17.07670 -15.94106 -15.37142 -15.16639 -14.92016 -14.14402 -13.22010 -13.13763 -12.90986 -12.74362 -12.44435 -11.95900 -11.79335 -11.57383 -11.29301 -11.08758 -10.60698 -10.30111 -9.82950 -9.54783 -8.89541 -7.86642 -7.68105 -7.11604 -6.32821 -4.78050 2.50058 3.00991 3.09984 3.17991 3.21923 3.68796 4.03356 4.54622 4.62658 5.02857 5.17846 5.30875 5.40279 5.57352 5.71373 5.74240 6.03868 6.19683 6.64627 6.74273 7.25827 7.35629 7.64501 7.77134 8.10652 8.18903 8.51021 8.88813 9.36053 10.42494 10.60061 Molecular weight = 209.09amu Principal moments of inertia in cm(-1) A = 0.074044 B = 0.007311 C = 0.006692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 378.061270 B = 3829.052306 C = 4183.367193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.066 3.934 3 C -0.258 4.258 4 C 0.331 3.669 5 N -0.658 5.658 6 C 0.551 3.449 7 O -0.555 6.555 8 C -0.536 4.536 9 H 0.074 0.926 10 C 0.087 3.913 11 N -0.759 5.759 12 Si 0.914 3.086 13 H -0.271 1.271 14 H -0.278 1.278 15 H -0.263 1.263 16 N -0.364 5.364 17 N -0.391 5.391 18 C 0.115 3.885 19 H 0.073 0.927 20 H 0.082 0.918 21 H 0.062 0.938 22 H 0.174 0.826 23 H 0.396 0.604 24 H 0.272 0.728 25 H 0.062 0.938 26 H 0.077 0.923 27 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.503 -9.388 -0.127 10.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.059 4.059 3 C -0.289 4.289 4 C 0.074 3.926 5 N -0.307 5.307 6 C 0.357 3.643 7 O -0.435 6.435 8 C -0.572 4.572 9 H 0.092 0.908 10 C -0.134 4.134 11 N -0.387 5.387 12 Si 0.739 3.261 13 H -0.196 1.196 14 H -0.203 1.203 15 H -0.187 1.187 16 N -0.197 5.197 17 N -0.177 5.177 18 C -0.028 4.028 19 H 0.092 0.908 20 H 0.101 0.899 21 H 0.081 0.919 22 H 0.191 0.809 23 H 0.229 0.771 24 H 0.083 0.917 25 H 0.081 0.919 26 H 0.096 0.904 27 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -4.743 -9.926 -0.127 11.002 hybrid contribution 0.754 0.867 -0.087 1.152 sum -3.989 -9.059 -0.214 9.901 Atomic orbital electron populations 1.20335 0.88107 1.03054 1.02642 1.21050 0.94248 0.87346 1.03277 1.21847 0.90402 1.00389 1.16277 1.19523 0.89691 0.88684 0.94655 1.43542 1.04720 1.06614 1.75821 1.18383 0.91107 0.77830 0.77026 1.90530 1.27056 1.72210 1.53732 1.20778 0.92191 0.90995 1.53269 0.90763 1.25728 0.96837 0.98227 0.92579 1.69994 1.23120 1.11954 1.33674 0.86241 0.81747 0.79192 0.78957 1.19641 1.20310 1.18715 1.77360 0.96040 1.10263 1.36002 1.47767 1.03268 1.04863 1.61766 1.21547 1.00051 0.78988 1.02174 0.90843 0.89877 0.91923 0.80924 0.77076 0.91743 0.91931 0.90441 0.90145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.07 10.11 36.00 0.36 -0.71 15 2 C 0.07 1.23 6.92 -82.26 -0.57 0.66 15 3 C -0.26 -6.03 9.51 -39.82 -0.38 -6.41 15 4 C 0.33 8.00 8.10 -154.66 -1.25 6.75 15 5 N -0.66 -16.33 5.43 -12.52 -0.07 -16.40 15 6 C 0.55 15.79 7.70 -13.10 -0.10 15.69 15 7 O -0.55 -17.43 12.15 5.13 0.06 -17.36 15 8 C -0.54 -14.87 9.52 -35.72 -0.34 -15.21 15 9 H 0.07 1.88 7.86 -52.49 -0.41 1.46 15 10 C 0.09 2.37 5.50 -17.35 -0.10 2.28 15 11 N -0.76 -22.01 11.85 55.55 0.66 -21.36 15 12 Si 0.91 19.62 29.56 -169.99 -5.03 14.59 15 13 H -0.27 -5.71 7.11 56.52 0.40 -5.31 15 14 H -0.28 -5.83 7.11 56.52 0.40 -5.42 15 15 H -0.26 -5.47 7.11 56.52 0.40 -5.07 15 16 N -0.36 -7.99 12.60 31.39 0.40 -7.59 15 17 N -0.39 -7.13 4.01 -63.89 -0.26 -7.38 15 18 C 0.11 1.37 11.27 59.85 0.67 2.04 15 19 H 0.07 0.85 8.14 -51.93 -0.42 0.42 15 20 H 0.08 1.05 8.14 -51.93 -0.42 0.62 15 21 H 0.06 0.63 7.07 -51.93 -0.37 0.27 15 22 H 0.17 4.46 5.90 -52.49 -0.31 4.15 15 23 H 0.40 8.68 8.80 -40.82 -0.36 8.32 15 24 H 0.27 7.10 8.29 -40.82 -0.34 6.77 15 25 H 0.06 0.65 8.14 -51.93 -0.42 0.23 15 26 H 0.08 0.70 7.04 -51.93 -0.37 0.33 15 27 H 0.08 0.90 8.14 -51.93 -0.42 0.47 15 LS Contribution 243.08 15.07 3.66 3.66 Total: -1.00 -34.59 243.08 -4.91 -39.49 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -2.64 Total: 7.25 kcal Atomic # 6 Polarization: 6.79 SS G_CDS: -1.70 Total: 5.09 kcal Atomic # 7 Polarization: -53.45 SS G_CDS: 0.73 Total: -52.72 kcal Atomic # 8 Polarization: -17.43 SS G_CDS: 0.06 Total: -17.36 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -5.03 Total: 14.59 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -34.59 -4.91 -39.49 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300784701.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.919 kcal (2) G-P(sol) polarization free energy of solvation -34.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds