Wall clock time and date at job start Sun Mar 29 2020 21:31:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46500 * 109.47468 * 2 1 4 4 C 1.35065 * 125.97178 * 125.00309 * 3 2 1 5 5 C 1.35171 * 107.89780 * 180.24487 * 4 3 2 6 6 C 1.40507 * 107.88385 * 359.58343 * 5 4 3 7 7 N 1.39668 * 125.99314 * 180.16810 * 6 5 4 8 8 C 1.34773 * 120.00111 * 0.26952 * 7 6 5 9 9 O 1.21763 * 120.00095 * 0.02562 * 8 7 6 10 10 C 1.46115 * 120.00372 * 179.97438 * 8 7 6 11 11 H 1.07999 * 119.99934 * 0.02562 * 10 8 7 12 12 C 1.40130 * 119.99851 * 180.02562 * 10 8 7 13 13 N 1.30631 * 120.00608 * 0.02562 * 12 10 8 14 14 Si 1.86807 * 119.99813 * 180.02562 * 12 10 8 15 15 H 1.48502 * 109.47020 * 59.99850 * 14 12 10 16 16 H 1.48497 * 109.46934 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.46933 * 299.99957 * 14 12 10 18 18 N 1.31414 * 108.02023 * 0.42164 * 6 5 4 19 19 H 1.09004 * 109.46957 * 299.99885 * 1 2 3 20 20 H 1.08996 * 109.47074 * 59.99588 * 1 2 3 21 21 H 1.08994 * 109.47207 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.46957 * 240.00115 * 2 1 3 23 23 H 1.08996 * 109.47074 * 120.00412 * 2 1 3 24 24 H 1.08002 * 126.04564 * 359.97438 * 4 3 2 25 25 H 1.08002 * 126.05672 * 179.71266 * 5 4 3 26 26 H 0.97003 * 120.00603 * 180.27084 * 7 6 5 27 27 H 0.97000 * 120.00242 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8741 1.9201 0.8954 5 6 3.0715 3.2133 0.5550 6 6 2.3149 3.4759 -0.5994 7 7 2.2452 4.6963 -1.2751 8 6 2.9503 5.7547 -0.8291 9 8 3.6485 5.6470 0.1626 10 6 2.8779 7.0313 -1.5363 11 1 2.2589 7.1269 -2.4162 12 6 3.6115 8.1316 -1.0728 13 7 4.3605 8.0160 -0.0088 14 14 3.5183 9.7639 -1.9765 15 1 2.1139 10.2463 -1.9835 16 1 4.3808 10.7593 -1.2905 17 1 3.9868 9.5833 -3.3741 18 7 1.6799 2.3735 -0.9289 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3633 -1.0276 0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5139 0.8899 24 1 3.3182 1.4094 1.7370 25 1 3.7010 3.9190 1.0767 26 1 1.6893 4.7822 -2.0654 27 1 4.8680 8.7778 0.3122 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300936970.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:37 Heat of formation + Delta-G solvation = 40.573851 kcal Electronic energy + Delta-G solvation = -13192.770736 eV Core-core repulsion = 10759.581176 eV Total energy + Delta-G solvation = -2433.189560 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.090 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.39936 -37.40594 -34.24900 -32.79416 -32.23197 -29.29124 -28.38864 -26.35987 -23.14244 -21.22426 -20.33174 -18.92768 -17.16351 -16.56213 -15.41496 -15.27141 -14.61351 -14.19707 -13.77205 -13.16488 -12.73364 -12.52161 -12.18739 -11.88647 -11.78459 -11.30608 -11.22581 -11.04826 -10.60318 -10.33980 -9.83698 -9.63434 -8.89924 -7.99129 -7.68342 -7.11255 -6.31459 -4.78392 2.56881 2.99480 3.12267 3.17439 3.19935 3.72434 4.03315 4.56023 4.60193 4.87981 5.10358 5.24948 5.36671 5.64238 5.72727 5.78024 6.08965 6.27470 6.57273 6.75267 7.25835 7.35638 7.64133 7.77505 8.09818 8.19436 8.51498 8.88768 9.36526 10.43131 10.60718 Molecular weight = 209.09amu Principal moments of inertia in cm(-1) A = 0.086836 B = 0.006722 C = 0.006334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 322.368771 B = 4164.444318 C = 4419.818744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.143 3.857 3 N -0.390 5.390 4 C 0.040 3.960 5 C -0.260 4.260 6 C 0.328 3.672 7 N -0.658 5.658 8 C 0.551 3.449 9 O -0.555 6.555 10 C -0.536 4.536 11 H 0.073 0.927 12 C 0.087 3.913 13 N -0.760 5.760 14 Si 0.915 3.085 15 H -0.266 1.266 16 H -0.279 1.279 17 H -0.266 1.266 18 N -0.360 5.360 19 H 0.058 0.942 20 H 0.069 0.931 21 H 0.066 0.934 22 H 0.073 0.927 23 H 0.087 0.913 24 H 0.164 0.836 25 H 0.173 0.827 26 H 0.396 0.604 27 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.250 -10.266 0.072 11.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.021 3.979 3 N -0.176 5.176 4 C -0.104 4.104 5 C -0.291 4.291 6 C 0.071 3.929 7 N -0.307 5.307 8 C 0.357 3.643 9 O -0.436 6.436 10 C -0.572 4.572 11 H 0.091 0.909 12 C -0.134 4.134 13 N -0.388 5.388 14 Si 0.739 3.261 15 H -0.191 1.191 16 H -0.204 1.204 17 H -0.191 1.191 18 N -0.193 5.193 19 H 0.077 0.923 20 H 0.088 0.912 21 H 0.085 0.915 22 H 0.091 0.909 23 H 0.105 0.895 24 H 0.181 0.819 25 H 0.190 0.810 26 H 0.229 0.771 27 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.402 -10.839 0.139 11.700 hybrid contribution 0.209 1.079 -0.241 1.125 sum -4.192 -9.761 -0.103 10.624 Atomic orbital electron populations 1.22042 0.94630 1.01901 1.03563 1.21392 0.95453 0.78471 1.02610 1.48023 1.37968 1.09188 1.22431 1.22483 0.96447 0.95036 0.96454 1.22107 1.09752 0.96070 1.01159 1.19576 0.93688 0.87167 0.92451 1.43521 1.49937 1.06769 1.30512 1.18361 0.78843 0.82258 0.84872 1.90531 1.42421 1.82907 1.27693 1.20744 1.29777 0.93330 1.13358 0.90863 1.25727 0.93342 1.00075 0.94258 1.69970 1.19420 1.30966 1.18440 0.86312 0.78991 0.80755 0.80056 1.19109 1.20426 1.19114 1.77304 1.29026 0.96665 1.16338 0.92318 0.91194 0.91506 0.90861 0.89468 0.81854 0.80958 0.77112 0.91672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.81 10.10 37.16 0.38 -1.43 15 2 C 0.14 1.70 7.23 -4.04 -0.03 1.68 15 3 N -0.39 -6.85 3.68 -61.37 -0.23 -7.07 15 4 C 0.04 0.71 11.43 -17.22 -0.20 0.51 15 5 C -0.26 -5.92 9.60 -39.82 -0.38 -6.31 15 6 C 0.33 7.78 8.10 -154.68 -1.25 6.53 15 7 N -0.66 -16.17 5.43 -12.52 -0.07 -16.24 15 8 C 0.55 15.71 7.70 -13.10 -0.10 15.61 15 9 O -0.55 -17.37 12.13 5.13 0.06 -17.30 15 10 C -0.54 -14.83 9.53 -35.71 -0.34 -15.17 15 11 H 0.07 1.84 7.85 -52.49 -0.41 1.43 15 12 C 0.09 2.36 5.50 -17.35 -0.10 2.27 15 13 N -0.76 -22.03 11.82 55.55 0.66 -21.37 15 14 Si 0.91 19.60 29.56 -169.99 -5.02 14.58 15 15 H -0.27 -5.56 7.11 56.52 0.40 -5.16 15 16 H -0.28 -5.84 7.11 56.52 0.40 -5.43 15 17 H -0.27 -5.57 7.11 56.52 0.40 -5.16 15 18 N -0.36 -7.66 12.44 31.39 0.39 -7.27 15 19 H 0.06 0.69 8.14 -51.93 -0.42 0.27 15 20 H 0.07 0.91 8.14 -51.93 -0.42 0.48 15 21 H 0.07 0.53 8.14 -51.93 -0.42 0.11 15 22 H 0.07 0.81 8.14 -51.93 -0.42 0.39 15 23 H 0.09 0.77 8.07 -51.93 -0.42 0.35 15 24 H 0.16 2.16 8.06 -52.49 -0.42 1.74 15 25 H 0.17 4.38 5.90 -52.49 -0.31 4.07 15 26 H 0.40 8.59 8.80 -40.82 -0.36 8.23 15 27 H 0.27 7.15 8.29 -40.82 -0.34 6.81 15 LS Contribution 245.10 15.07 3.69 3.69 Total: -1.00 -33.89 245.10 -5.29 -39.18 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -2.75 Total: 8.13 kcal Atomic # 6 Polarization: 5.70 SS G_CDS: -2.02 Total: 3.68 kcal Atomic # 7 Polarization: -52.71 SS G_CDS: 0.75 Total: -51.96 kcal Atomic # 8 Polarization: -17.37 SS G_CDS: 0.06 Total: -17.30 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -5.02 Total: 14.58 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -33.89 -5.29 -39.18 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300936970.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.754 kcal (2) G-P(sol) polarization free energy of solvation -33.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds