Wall clock time and date at job start Sun Mar 29 2020 21:54:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46907 * 109.47159 * 13.07614 * 3 2 1 5 5 C 1.43915 * 110.99739 * 169.99922 * 4 3 2 6 6 C 1.52473 * 105.41533 * 223.43161 * 5 4 3 7 7 C 1.46654 * 114.11031 * 269.64414 * 6 5 4 8 8 N 1.50235 * 106.98377 * 58.14052 * 7 6 5 9 9 C 1.36938 * 120.55507 * 111.48299 * 8 7 6 10 10 H 1.08004 * 119.99389 * 326.11022 * 9 8 7 11 11 C 1.38804 * 120.00325 * 146.10719 * 9 8 7 12 12 N 1.31625 * 120.00051 * 332.14552 * 11 9 8 13 13 Si 1.86802 * 120.00191 * 152.14209 * 11 9 8 14 14 H 1.48506 * 109.47009 * 270.00276 * 13 11 9 15 15 H 1.48492 * 109.47119 * 150.00073 * 13 11 9 16 16 H 1.48500 * 109.46931 * 30.00096 * 13 11 9 17 17 C 1.43662 * 118.89597 * 291.75290 * 8 7 6 18 18 C 1.48814 * 111.00262 * 295.31461 * 4 3 2 19 19 H 1.08998 * 109.46830 * 253.07983 * 3 2 1 20 20 H 1.08993 * 109.46785 * 133.07721 * 3 2 1 21 21 H 1.09003 * 110.24857 * 104.45786 * 5 4 3 22 22 H 1.08997 * 110.25200 * 342.40193 * 5 4 3 23 23 H 1.08997 * 108.55492 * 148.45205 * 6 5 4 24 24 H 1.08999 * 108.55825 * 30.83958 * 6 5 4 25 25 H 1.08999 * 109.95243 * 298.77604 * 7 6 5 26 26 H 1.08996 * 110.02004 * 177.54518 * 7 6 5 27 27 H 0.96998 * 119.99639 * 354.21387 * 12 11 9 28 28 H 1.08994 * 108.14266 * 210.60414 * 17 8 7 29 29 H 1.08996 * 108.14669 * 327.13245 * 17 8 7 30 30 H 1.09003 * 109.23269 * 316.58801 * 18 4 3 31 31 H 1.09001 * 109.24001 * 76.00692 * 18 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0983 -1.3483 -0.3134 5 6 4.5177 -1.3388 -0.5508 6 6 4.7294 -2.2205 -1.7766 7 6 4.9606 -3.6347 -1.4646 8 7 3.7670 -4.1137 -0.6881 9 6 2.8959 -5.0164 -1.2371 10 1 2.6935 -4.9951 -2.2978 11 6 2.2732 -5.9589 -0.4305 12 7 2.8602 -6.3717 0.6729 13 14 0.6020 -6.6415 -0.9110 14 1 -0.4664 -5.7953 -0.3213 15 1 0.4702 -8.0307 -0.4031 16 1 0.4739 -6.6410 -2.3904 17 6 3.5514 -3.6043 0.6378 18 6 2.7165 -2.3153 0.7514 19 1 2.9711 0.2999 0.9832 20 1 2.9709 0.7027 -0.7506 21 1 5.0466 -1.7528 0.3076 22 1 4.8597 -0.3237 -0.7528 23 1 5.5883 -1.8429 -2.3314 24 1 3.8485 -2.1456 -2.4142 25 1 5.8628 -3.7400 -0.8620 26 1 5.0598 -4.2088 -2.3858 27 1 3.7624 -6.0819 0.8798 28 1 3.0528 -4.3780 1.2216 29 1 4.5244 -3.4180 1.0922 30 1 2.8862 -1.8603 1.7273 31 1 1.6598 -2.5629 0.6496 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306181847.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:48 Heat of formation + Delta-G solvation = 68.341526 kcal Electronic energy + Delta-G solvation = -14223.482840 eV Core-core repulsion = 11927.330471 eV Total energy + Delta-G solvation = -2296.152369 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.79930 -36.36190 -34.85216 -32.74236 -30.57003 -28.84433 -26.15942 -24.57908 -23.37175 -20.01320 -19.61910 -17.79466 -16.88968 -15.82345 -15.49086 -14.39941 -14.19080 -13.58257 -13.49554 -13.15386 -12.88881 -12.61584 -12.25152 -12.14434 -11.76175 -11.51876 -10.80998 -10.66183 -10.50835 -10.33252 -10.22925 -9.99813 -9.94470 -9.30291 -8.31285 -7.93985 -6.78553 -5.97390 -3.29178 2.88290 3.00527 3.55174 3.57871 3.73233 4.17539 4.42527 4.61888 5.14358 5.21358 5.32799 5.37735 5.51698 5.64742 5.81468 5.94325 6.05354 6.09833 6.31204 6.46165 6.58777 6.76858 6.90019 7.09415 7.12597 7.39553 7.57196 7.81152 8.12142 8.63566 9.14740 9.86639 10.33366 11.19095 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.027294 B = 0.012435 C = 0.009758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.606924 B = 2251.255509 C = 2868.895022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C 0.220 3.780 3 C 0.143 3.857 4 N -0.522 5.522 5 C 0.067 3.933 6 C -0.126 4.126 7 C 0.136 3.864 8 N -0.579 5.579 9 C -0.337 4.337 10 H 0.050 0.950 11 C -0.022 4.022 12 N -0.906 5.906 13 Si 1.061 2.939 14 H -0.293 1.293 15 H -0.290 1.290 16 H -0.291 1.291 17 C 0.140 3.860 18 C 0.032 3.968 19 H 0.072 0.928 20 H 0.112 0.888 21 H 0.051 0.949 22 H 0.062 0.938 23 H 0.043 0.957 24 H 0.074 0.926 25 H 0.023 0.977 26 H 0.059 0.941 27 H 0.268 0.732 28 H 0.082 0.918 29 H 0.018 0.982 30 H 0.028 0.972 31 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.182 10.976 -0.684 12.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.115 5.115 2 C -0.099 4.099 3 C 0.013 3.987 4 N -0.248 5.248 5 C -0.061 4.061 6 C -0.166 4.166 7 C 0.012 3.988 8 N -0.301 5.301 9 C -0.467 4.467 10 H 0.067 0.933 11 C -0.225 4.225 12 N -0.546 5.546 13 Si 0.891 3.109 14 H -0.221 1.221 15 H -0.217 1.217 16 H -0.218 1.218 17 C 0.010 3.990 18 C -0.097 4.097 19 H 0.089 0.911 20 H 0.130 0.870 21 H 0.069 0.931 22 H 0.080 0.920 23 H 0.061 0.939 24 H 0.092 0.908 25 H 0.041 0.959 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.100 0.900 29 H 0.037 0.963 30 H 0.046 0.954 31 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.058 9.776 -0.659 10.012 hybrid contribution 1.924 1.371 0.175 2.369 sum 3.982 11.147 -0.485 11.847 Atomic orbital electron populations 1.81153 1.13123 1.08115 1.09148 1.29063 0.95143 0.92953 0.92752 1.19728 0.82375 0.94428 1.02199 1.61869 1.14503 1.03144 1.45304 1.21532 0.86987 0.98837 0.98744 1.20942 1.00998 0.97197 0.97451 1.20500 0.89448 0.92848 0.96011 1.43881 1.24336 1.47114 1.14737 1.19867 1.21808 1.09881 0.95104 0.93271 1.25811 1.05049 0.94267 0.97356 1.70764 1.15046 1.40411 1.28411 0.83578 0.76165 0.76099 0.75078 1.22064 1.21688 1.21772 1.20432 0.95755 0.93401 0.89376 1.23589 1.02269 0.94589 0.89295 0.91076 0.87034 0.93107 0.92002 0.93891 0.90758 0.95872 0.92197 0.92094 0.90035 0.96344 0.95357 0.91476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -8.07 18.54 42.15 0.78 -7.29 16 2 C 0.22 3.44 14.78 -20.76 -0.31 3.13 16 3 C 0.14 1.75 5.27 -6.61 -0.03 1.71 16 4 N -0.52 -8.52 4.00 -238.62 -0.95 -9.47 16 5 C 0.07 0.97 5.50 -5.68 -0.03 0.94 16 6 C -0.13 -2.08 5.32 -30.03 -0.16 -2.24 16 7 C 0.14 2.71 6.21 -4.98 -0.03 2.68 16 8 N -0.58 -14.03 2.51 -175.22 -0.44 -14.47 16 9 C -0.34 -9.35 9.44 -15.06 -0.14 -9.50 16 10 H 0.05 1.41 7.97 -52.48 -0.42 0.99 16 11 C -0.02 -0.64 4.82 -17.43 -0.08 -0.72 16 12 N -0.91 -26.79 12.19 55.49 0.68 -26.12 16 13 Si 1.06 25.96 30.00 -169.99 -5.10 20.86 16 14 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 15 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 16 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 17 C 0.14 3.13 4.41 -5.02 -0.02 3.11 16 18 C 0.03 0.62 5.52 -2.24 -0.01 0.61 16 19 H 0.07 0.70 8.00 -51.93 -0.42 0.28 16 20 H 0.11 1.02 7.81 -51.93 -0.41 0.61 16 21 H 0.05 0.76 6.13 -51.93 -0.32 0.45 16 22 H 0.06 0.67 7.43 -51.93 -0.39 0.29 16 23 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 24 H 0.07 1.40 7.86 -51.93 -0.41 0.99 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.06 1.22 7.99 -51.93 -0.42 0.81 16 27 H 0.27 7.93 7.21 -40.82 -0.29 7.64 16 28 H 0.08 2.13 5.15 -51.93 -0.27 1.86 16 29 H 0.02 0.38 6.89 -51.93 -0.36 0.02 16 30 H 0.03 0.47 7.90 -51.93 -0.41 0.06 16 31 H 0.07 1.48 7.82 -51.93 -0.41 1.08 16 LS Contribution 254.25 15.07 3.83 3.83 Total: -1.00 -31.43 254.25 -6.17 -37.60 By element: Atomic # 1 Polarization: -0.52 SS G_CDS: -4.14 Total: -4.66 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: -0.82 Total: -0.28 kcal Atomic # 7 Polarization: -57.41 SS G_CDS: 0.06 Total: -57.35 kcal Atomic # 14 Polarization: 25.96 SS G_CDS: -5.10 Total: 20.86 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -31.43 -6.17 -37.60 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306181847.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.940 kcal (2) G-P(sol) polarization free energy of solvation -31.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds