Wall clock time and date at job start Sun Mar 29 2020 21:37:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.32614 * 124.62190 * 2 1 4 4 C 1.47100 * 124.62019 * 0.28475 * 3 2 1 5 5 O 1.21614 * 120.00080 * 354.55491 * 4 3 2 6 6 N 1.34771 * 119.99886 * 174.55408 * 4 3 2 7 7 C 1.46503 * 120.00245 * 179.97438 * 6 4 3 8 8 C 1.50696 * 109.47361 * 180.02562 * 7 6 4 9 9 H 1.07993 * 119.99901 * 359.97438 * 8 7 6 10 10 C 1.37878 * 119.99997 * 180.02562 * 8 7 6 11 11 N 1.31517 * 119.99941 * 359.97438 * 10 8 7 12 12 Si 1.86792 * 120.00130 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.47433 * 0.02562 * 12 10 8 14 14 H 1.48501 * 109.47426 * 119.99821 * 12 10 8 15 15 H 1.48500 * 109.47355 * 239.99518 * 12 10 8 16 16 C 1.51108 * 110.75682 * 180.02562 * 3 2 1 17 17 C 1.54574 * 104.84228 * 16.59495 * 16 3 2 18 18 C 1.51113 * 124.62014 * 180.02562 * 2 1 3 19 19 H 1.08999 * 109.47009 * 62.38746 * 1 2 3 20 20 H 1.09003 * 109.47566 * 182.39638 * 1 2 3 21 21 H 1.09002 * 109.46876 * 302.38797 * 1 2 3 22 22 H 0.96999 * 120.00524 * 0.02562 * 6 4 3 23 23 H 1.09009 * 109.47054 * 300.00354 * 7 6 4 24 24 H 1.09000 * 109.46915 * 59.99901 * 7 6 4 25 25 H 0.97003 * 120.00055 * 180.02562 * 11 10 8 26 26 H 1.09005 * 110.36599 * 135.43666 * 16 3 2 27 27 H 1.09000 * 110.36364 * 257.75605 * 16 3 2 28 28 H 1.09003 * 110.98166 * 93.07356 * 17 16 3 29 29 H 1.09000 * 110.98469 * 216.83046 * 17 16 3 30 30 H 1.08999 * 110.36447 * 44.53345 * 18 2 1 31 31 H 1.09011 * 110.36686 * 282.22357 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2604 1.0913 0.0000 4 6 1.7391 2.4668 0.0060 5 8 0.5428 2.6641 -0.0885 6 7 2.5872 3.5084 0.1163 7 6 2.0681 4.8784 0.1217 8 6 3.2132 5.8490 0.2541 9 1 4.2263 5.4821 0.3273 10 6 2.9675 7.2054 0.2828 11 7 1.7337 7.6521 0.1941 12 14 4.3868 8.4085 0.4476 13 1 5.6654 7.6576 0.5283 14 1 4.4146 9.3064 -0.7349 15 1 4.2089 9.2181 1.6797 16 6 3.7275 0.7292 -0.0006 17 6 3.7686 -0.7558 -0.4278 18 6 2.3655 -1.2436 -0.0006 19 1 -0.3633 0.4763 -0.9106 20 1 -0.3634 -1.0268 0.0430 21 1 -0.3633 0.5505 0.8678 22 1 3.5414 3.3511 0.1913 23 1 1.5364 5.0692 -0.8106 24 1 1.3852 5.0048 0.9618 25 1 1.5608 8.6064 0.2139 26 1 4.2700 1.3453 -0.7177 27 1 4.1480 0.8484 0.9979 28 1 3.9026 -0.8483 -1.5056 29 1 4.5499 -1.2947 0.1083 30 1 1.9816 -1.9692 -0.7175 31 1 2.4030 -1.6791 0.9980 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306210011.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:38 Heat of formation + Delta-G solvation = -66.280103 kcal Electronic energy + Delta-G solvation = -13409.448068 eV Core-core repulsion = 11075.165316 eV Total energy + Delta-G solvation = -2334.282752 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.95834 -38.73915 -36.19419 -34.40614 -32.15335 -30.59279 -28.70770 -26.65102 -24.95117 -22.73056 -21.34989 -19.99114 -18.19803 -17.18963 -16.96451 -16.68295 -16.08592 -15.74584 -15.05907 -14.29108 -14.14319 -14.04933 -13.89093 -13.57935 -13.31920 -12.91310 -12.76292 -12.51220 -12.26786 -12.23855 -11.95168 -11.82416 -11.48467 -10.83923 -10.72187 -9.96954 -9.53215 -8.31788 -6.49037 0.44181 1.41623 1.43381 1.57063 2.31929 2.36129 2.64681 3.03002 3.58451 3.67107 4.12104 4.21943 4.25100 4.55234 4.68588 4.81291 4.90449 4.97244 5.00692 5.05299 5.12365 5.19499 5.22140 5.40271 5.45218 5.55252 5.61505 5.75032 5.82250 6.61737 6.91080 7.20252 7.45944 8.81015 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.052848 B = 0.006758 C = 0.006051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.696671 B = 4142.514901 C = 4626.192097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.047 4.047 3 C -0.227 4.227 4 C 0.538 3.462 5 O -0.601 6.601 6 N -0.704 5.704 7 C 0.266 3.734 8 C -0.557 4.557 9 H 0.083 0.917 10 C 0.003 3.997 11 N -0.932 5.932 12 Si 0.988 3.012 13 H -0.253 1.253 14 H -0.277 1.277 15 H -0.277 1.277 16 C -0.087 4.087 17 C -0.112 4.112 18 C -0.090 4.090 19 H 0.058 0.942 20 H 0.094 0.906 21 H 0.054 0.946 22 H 0.406 0.594 23 H -0.013 1.013 24 H -0.013 1.013 25 H 0.270 0.730 26 H 0.071 0.929 27 H 0.085 0.915 28 H 0.078 0.922 29 H 0.102 0.898 30 H 0.099 0.901 31 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.569 -17.504 -0.032 18.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.049 4.049 3 C -0.230 4.230 4 C 0.328 3.672 5 O -0.485 6.485 6 N -0.353 5.353 7 C 0.144 3.856 8 C -0.595 4.595 9 H 0.101 0.899 10 C -0.197 4.197 11 N -0.570 5.570 12 Si 0.811 3.189 13 H -0.176 1.176 14 H -0.203 1.203 15 H -0.203 1.203 16 C -0.124 4.124 17 C -0.150 4.150 18 C -0.127 4.127 19 H 0.077 0.923 20 H 0.113 0.887 21 H 0.072 0.928 22 H 0.241 0.759 23 H 0.005 0.995 24 H 0.005 0.995 25 H 0.078 0.922 26 H 0.090 0.910 27 H 0.103 0.897 28 H 0.096 0.904 29 H 0.121 0.879 30 H 0.117 0.883 31 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 5.656 -17.178 -0.100 18.085 hybrid contribution 0.251 1.317 0.086 1.343 sum 5.906 -15.861 -0.013 16.925 Atomic orbital electron populations 1.20601 0.90832 1.02806 1.01904 1.23242 0.96146 0.95550 0.89997 1.21804 0.99037 0.90708 1.11454 1.18860 0.85781 0.86310 0.76206 1.90684 1.17414 1.87086 1.53346 1.46120 1.10615 1.06496 1.72043 1.18559 0.94747 0.78320 0.94020 1.21634 0.93653 0.91679 1.52532 0.89927 1.26113 0.99185 1.00587 0.93773 1.70152 1.21792 1.15285 1.49792 0.85059 0.78322 0.77707 0.77810 1.17627 1.20265 1.20255 1.21250 0.90256 0.98351 1.02586 1.22426 0.97016 0.93300 1.02234 1.21489 0.93402 0.93896 1.03913 0.92324 0.88743 0.92770 0.75865 0.99535 0.99525 0.92155 0.91042 0.89669 0.90356 0.87937 0.88253 0.87871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.96 8.80 71.24 0.63 -2.34 16 2 C -0.05 -1.29 6.23 -17.48 -0.11 -1.40 16 3 C -0.23 -7.43 6.09 -18.57 -0.11 -7.54 16 4 C 0.54 24.30 7.78 86.57 0.67 24.97 16 5 O -0.60 -31.99 14.76 -4.08 -0.06 -32.05 16 6 N -0.70 -32.83 5.54 -470.44 -2.61 -35.44 16 7 C 0.27 15.46 5.43 85.63 0.46 15.92 16 8 C -0.56 -31.51 9.28 25.60 0.24 -31.28 16 9 H 0.08 4.24 7.60 -2.91 -0.02 4.22 16 10 C 0.00 0.16 5.46 84.65 0.46 0.63 16 11 N -0.93 -57.50 13.29 21.45 0.28 -57.21 16 12 Si 0.99 43.13 29.54 68.60 2.03 45.15 16 13 H -0.25 -10.19 7.11 99.48 0.71 -9.48 16 14 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 15 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 16 C -0.09 -2.04 5.96 30.51 0.18 -1.86 16 17 C -0.11 -1.79 7.16 31.66 0.23 -1.56 16 18 C -0.09 -1.51 6.74 30.51 0.21 -1.31 16 19 H 0.06 1.90 7.83 -2.39 -0.02 1.88 16 20 H 0.09 1.85 8.13 -2.39 -0.02 1.83 16 21 H 0.05 1.78 7.79 -2.39 -0.02 1.76 16 22 H 0.41 16.05 7.46 -92.71 -0.69 15.35 16 23 H -0.01 -0.86 8.14 -2.38 -0.02 -0.88 16 24 H -0.01 -0.86 8.14 -2.39 -0.02 -0.87 16 25 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 26 H 0.07 1.68 8.01 -2.38 -0.02 1.66 16 27 H 0.08 1.82 8.14 -2.39 -0.02 1.81 16 28 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.10 1.39 8.14 -2.38 -0.02 1.37 16 Total: -1.00 -73.66 265.49 2.93 -70.74 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: 0.42 Total: 14.57 kcal Atomic # 6 Polarization: -8.61 SS G_CDS: 2.86 Total: -5.76 kcal Atomic # 7 Polarization: -90.33 SS G_CDS: -2.32 Total: -92.65 kcal Atomic # 8 Polarization: -31.99 SS G_CDS: -0.06 Total: -32.05 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.15 kcal Total: -73.66 2.93 -70.74 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306210011.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.457 kcal (2) G-P(sol) polarization free energy of solvation -73.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds