Wall clock time and date at job start Sun Mar 29 2020 21:31:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50700 * 109.47208 * 2 1 4 4 O 1.21303 * 119.99816 * 359.97438 * 3 2 1 5 5 N 1.34777 * 119.99675 * 180.27843 * 3 2 1 6 6 C 1.40595 * 119.99527 * 179.72943 * 5 3 2 7 7 C 1.40649 * 126.08553 * 359.68015 * 6 5 3 8 8 N 1.30903 * 108.38945 * 179.87998 * 7 6 5 9 9 N 1.40074 * 108.40705 * 0.38914 * 8 7 6 10 10 C 1.37320 * 126.07077 * 179.73305 * 9 8 7 11 11 H 1.07999 * 120.00028 * 180.02562 * 10 9 8 12 12 C 1.38983 * 120.00055 * 0.02562 * 10 9 8 13 13 N 1.31296 * 119.99923 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 120.00025 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.47382 * 0.02562 * 14 12 10 16 16 H 1.48504 * 109.46738 * 120.00166 * 14 12 10 17 17 H 1.48494 * 109.47440 * 239.99960 * 14 12 10 18 18 C 1.35679 * 126.07814 * 179.97438 * 6 5 3 19 19 H 1.08996 * 109.47100 * 179.97438 * 1 2 3 20 20 H 1.08995 * 109.46638 * 300.00002 * 1 2 3 21 21 H 1.08998 * 109.46846 * 59.99549 * 1 2 3 22 22 H 1.09009 * 109.46730 * 239.99906 * 2 1 3 23 23 H 1.08998 * 109.46846 * 120.00451 * 2 1 3 24 24 H 0.97001 * 120.00485 * 359.71840 * 5 3 2 25 25 H 1.07999 * 125.80209 * 0.02562 * 7 6 5 26 26 H 0.97004 * 120.00252 * 179.97438 * 13 12 10 27 27 H 1.07996 * 126.24944 * 359.92772 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2441 2.3428 -0.0005 5 7 3.3575 1.6670 -0.0057 6 6 3.8261 2.9925 -0.0114 7 6 3.0306 4.1524 -0.0183 8 7 3.8214 5.1956 -0.0196 9 7 5.1477 4.7451 -0.0226 10 6 6.2702 5.5361 -0.0299 11 1 7.2504 5.0826 -0.0320 12 6 6.1449 6.9203 -0.0344 13 7 4.9533 7.4716 -0.0313 14 14 7.6719 7.9963 -0.0436 15 1 8.8830 7.1369 -0.0453 16 1 7.6690 8.8493 -1.2592 17 1 7.6775 8.8580 1.1658 18 6 5.1263 3.3803 -0.0169 19 1 -0.3633 -1.0276 -0.0005 20 1 -0.3632 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8899 22 1 1.8933 -0.5139 -0.8901 23 1 1.8933 -0.5139 0.8899 24 1 3.9878 0.9297 -0.0056 25 1 1.9509 4.1780 -0.0197 26 1 4.8659 8.4377 -0.0341 27 1 5.9872 2.7283 -0.0166 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306215911.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:14 Heat of formation + Delta-G solvation = 38.450641 kcal Electronic energy + Delta-G solvation = -13212.686415 eV Core-core repulsion = 10779.404785 eV Total energy + Delta-G solvation = -2433.281629 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.090 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.84743 -38.53975 -34.17541 -33.12753 -32.47209 -30.17671 -27.80359 -25.16330 -23.77665 -20.92229 -19.94496 -19.34598 -17.49684 -16.36571 -15.43038 -15.29651 -15.17392 -14.04235 -13.51376 -13.50231 -12.90847 -12.76117 -12.13777 -11.66206 -11.56593 -11.36897 -11.26540 -11.03390 -10.90237 -10.49305 -10.10017 -9.13427 -9.08703 -8.76526 -8.02173 -6.65062 -6.52984 -4.19672 2.88738 3.06474 3.08338 3.12460 3.69546 3.72129 3.93480 4.46750 4.79082 5.04729 5.11875 5.24237 5.27148 5.71374 5.86461 6.05292 6.27575 6.33678 6.51358 6.95119 7.01044 7.18520 7.29470 7.89594 8.24628 8.34744 8.68203 8.94943 9.41740 9.70986 10.43221 Molecular weight = 209.09amu Principal moments of inertia in cm(-1) A = 0.104703 B = 0.006668 C = 0.006298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 267.357642 B = 4198.129184 C = 4445.035434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.139 4.139 3 C 0.494 3.506 4 O -0.539 6.539 5 N -0.629 5.629 6 C -0.060 4.060 7 C -0.035 4.035 8 N -0.261 5.261 9 N -0.144 5.144 10 C -0.323 4.323 11 H 0.116 0.884 12 C 0.045 3.955 13 N -0.771 5.771 14 Si 0.935 3.065 15 H -0.263 1.263 16 H -0.274 1.274 17 H -0.274 1.274 18 C -0.085 4.085 19 H 0.055 0.945 20 H 0.061 0.939 21 H 0.061 0.939 22 H 0.087 0.913 23 H 0.087 0.913 24 H 0.396 0.604 25 H 0.176 0.824 26 H 0.274 0.726 27 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.378 -10.996 0.019 11.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.180 4.180 3 C 0.280 3.720 4 O -0.416 6.416 5 N -0.271 5.271 6 C -0.165 4.165 7 C -0.211 4.211 8 N -0.092 5.092 9 N 0.088 4.912 10 C -0.456 4.456 11 H 0.134 0.866 12 C -0.172 4.172 13 N -0.397 5.397 14 Si 0.759 3.241 15 H -0.187 1.187 16 H -0.199 1.199 17 H -0.199 1.199 18 C -0.236 4.236 19 H 0.074 0.926 20 H 0.080 0.920 21 H 0.080 0.920 22 H 0.105 0.895 23 H 0.105 0.895 24 H 0.229 0.771 25 H 0.193 0.807 26 H 0.084 0.916 27 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -1.000 -8.830 0.017 8.887 hybrid contribution 1.103 -0.908 0.000 1.429 sum 0.103 -9.738 0.018 9.739 Atomic orbital electron populations 1.21498 0.93347 1.00941 1.03454 1.21565 0.98433 0.94303 1.03683 1.20560 0.82004 0.91417 0.77984 1.90584 1.55186 1.45992 1.49873 1.42606 1.06577 1.06285 1.71632 1.17328 0.92101 0.83750 1.23342 1.24116 1.00174 0.88654 1.08107 1.78240 0.85448 1.19825 1.25680 1.44553 1.05308 1.02032 1.39344 1.19907 0.84005 0.88223 1.53434 0.86617 1.25643 0.98424 0.97537 0.95546 1.70233 1.22141 1.11786 1.35574 0.85766 0.80229 0.79692 0.78449 1.18714 1.19938 1.19936 1.21268 0.95806 0.86442 1.20086 0.92591 0.92000 0.92006 0.89462 0.89471 0.77095 0.80748 0.91554 0.83750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.56 9.20 37.16 0.34 -1.22 15 2 C -0.14 -1.63 6.42 -27.88 -0.18 -1.81 15 3 C 0.49 8.75 7.80 -10.98 -0.09 8.67 15 4 O -0.54 -11.90 13.13 5.54 0.07 -11.82 15 5 N -0.63 -11.41 5.47 -10.00 -0.05 -11.46 15 6 C -0.06 -1.42 6.90 -83.84 -0.58 -1.99 15 7 C -0.03 -0.95 10.85 -17.04 -0.18 -1.14 15 8 N -0.26 -7.78 10.40 30.80 0.32 -7.46 15 9 N -0.14 -4.06 3.74 -11.41 -0.04 -4.10 15 10 C -0.32 -8.71 10.25 -14.82 -0.15 -8.87 15 11 H 0.12 2.78 7.83 -52.49 -0.41 2.37 15 12 C 0.05 1.19 5.50 -17.50 -0.10 1.10 15 13 N -0.77 -21.90 11.81 55.49 0.66 -21.25 15 14 Si 0.93 19.18 29.55 -169.99 -5.02 14.15 15 15 H -0.26 -5.12 7.11 56.52 0.40 -4.72 15 16 H -0.27 -5.57 7.11 56.52 0.40 -5.17 15 17 H -0.27 -5.57 7.11 56.52 0.40 -5.17 15 18 C -0.09 -2.05 11.49 -16.39 -0.19 -2.24 15 19 H 0.06 0.49 8.14 -51.93 -0.42 0.07 15 20 H 0.06 0.79 8.10 -51.93 -0.42 0.37 15 21 H 0.06 0.79 8.10 -51.93 -0.42 0.37 15 22 H 0.09 0.83 8.14 -51.92 -0.42 0.41 15 23 H 0.09 0.83 8.14 -51.93 -0.42 0.40 15 24 H 0.40 5.45 8.83 -40.82 -0.36 5.09 15 25 H 0.18 4.72 5.92 -52.49 -0.31 4.41 15 26 H 0.27 7.09 8.31 -40.82 -0.34 6.75 15 27 H 0.15 2.89 8.06 -52.49 -0.42 2.47 15 LS Contribution 243.40 15.07 3.67 3.67 Total: -1.00 -33.87 243.40 -4.28 -38.14 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -2.75 Total: 7.65 kcal Atomic # 6 Polarization: -6.39 SS G_CDS: -1.12 Total: -7.51 kcal Atomic # 7 Polarization: -45.16 SS G_CDS: 0.88 Total: -44.28 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: 0.07 Total: -11.82 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -5.02 Total: 14.15 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -33.87 -4.28 -38.14 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306215911.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.595 kcal (2) G-P(sol) polarization free energy of solvation -33.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds