Wall clock time and date at job start Sun Mar 29 2020 21:34:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86801 * 119.99649 * 2 1 4 4 H 1.48497 * 109.47311 * 240.00158 * 3 2 1 5 5 H 1.48502 * 109.47325 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47591 * 119.99911 * 3 2 1 7 7 C 1.38941 * 120.00510 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00216 * 179.97438 * 7 2 1 9 9 N 1.37102 * 120.00104 * 0.02562 * 7 2 1 10 10 C 1.34777 * 120.00468 * 179.97438 * 9 7 2 11 11 O 1.21300 * 119.99649 * 359.97438 * 10 9 7 12 12 C 1.50690 * 120.00347 * 179.97438 * 10 9 7 13 13 H 1.09007 * 115.55011 * 34.27667 * 12 10 9 14 14 C 1.53000 * 117.50063 * 248.60878 * 12 10 9 15 15 C 1.53002 * 60.02940 * 252.49714 * 14 12 10 16 16 H 1.09000 * 117.49996 * 107.50493 * 15 14 12 17 17 C 1.53002 * 117.49773 * 252.51785 * 15 14 12 18 18 C 1.53777 * 113.61709 * 227.74909 * 17 15 14 19 19 C 1.53954 * 87.01934 * 220.04944 * 18 17 15 20 20 C 1.53785 * 87.11497 * 25.36151 * 19 18 17 21 21 H 0.97002 * 120.00527 * 359.97438 * 1 2 3 22 22 H 0.97000 * 119.99502 * 359.97438 * 9 7 2 23 23 H 1.09002 * 117.49833 * 359.97438 * 14 12 10 24 24 H 1.09002 * 117.49953 * 144.99860 * 14 12 10 25 25 H 1.09005 * 112.84809 * 358.94445 * 17 15 14 26 26 H 1.08995 * 113.61141 * 334.56347 * 18 17 15 27 27 H 1.08996 * 113.61798 * 105.47083 * 18 17 15 28 28 H 1.09002 * 113.53528 * 270.81075 * 19 18 17 29 29 H 1.09004 * 113.66758 * 139.92970 * 19 18 17 30 30 H 1.08991 * 113.61463 * 220.09352 * 20 19 18 31 31 H 1.08993 * 113.68960 * 89.19642 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1017 1.6966 -1.2125 5 1 1.2830 2.7465 -0.0006 6 1 3.1018 1.6966 1.2125 7 6 2.0089 -1.2032 0.0005 8 1 3.0889 -1.2031 0.0001 9 7 1.3235 -2.3906 0.0005 10 6 1.9974 -3.5578 0.0005 11 8 3.2104 -3.5577 0.0001 12 6 1.2441 -4.8629 0.0011 13 1 0.3050 -4.8639 -0.5524 14 6 1.3201 -5.7219 1.2649 15 6 2.0663 -6.1540 0.0010 16 1 3.1522 -6.0595 0.0006 17 6 1.5073 -7.3474 -0.7762 18 6 2.5722 -8.3911 -1.1523 19 6 1.8574 -8.5131 -2.5104 20 6 1.3461 -7.0808 -2.2822 21 1 -0.4851 0.8400 0.0004 22 1 0.3535 -2.3906 0.0005 23 1 1.9154 -5.3433 2.0958 24 1 0.4311 -6.2881 1.5428 25 1 0.6198 -7.7771 -0.3114 26 1 3.5793 -7.9807 -1.2245 27 1 2.5259 -9.2986 -0.5504 28 1 1.0661 -9.2628 -2.5200 29 1 2.5383 -8.6040 -3.3567 30 1 0.3115 -6.9322 -2.5910 31 1 2.0165 -6.3106 -2.6634 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306219604.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:25 Heat of formation + Delta-G solvation = -8.155253 kcal Electronic energy + Delta-G solvation = -13379.557961 eV Core-core repulsion = 11047.795692 eV Total energy + Delta-G solvation = -2331.762269 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.37133 -37.90070 -35.16303 -33.75279 -31.14883 -26.43325 -25.46760 -25.15694 -22.65469 -20.77439 -19.24207 -18.82151 -17.76328 -16.26764 -15.43885 -14.83682 -14.57458 -13.98084 -13.55600 -13.15398 -12.72495 -12.30868 -12.29643 -11.68236 -11.55428 -11.47583 -11.05872 -10.57672 -10.48056 -10.42361 -10.33669 -10.19964 -9.62208 -9.45405 -9.37257 -8.36436 -7.94842 -6.40043 -3.80569 3.19929 3.26621 3.31233 3.67522 4.16711 4.35859 4.65279 4.79727 4.85114 5.00570 5.16108 5.28305 5.44857 5.52554 5.62978 5.76213 5.79050 5.92491 5.93350 6.01025 6.04834 6.10405 6.35431 6.38139 6.58128 6.60222 6.77336 7.56207 8.08339 8.63826 9.19211 9.58360 10.10422 10.77614 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.061226 B = 0.006251 C = 0.006233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 457.210856 B = 4478.003714 C = 4491.051559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.023 3.977 3 Si 0.931 3.069 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.302 4.302 8 H 0.102 0.898 9 N -0.557 5.557 10 C 0.468 3.532 11 O -0.598 6.598 12 C -0.162 4.162 13 H 0.108 0.892 14 C -0.160 4.160 15 C -0.116 4.116 16 H 0.114 0.886 17 C -0.080 4.080 18 C -0.133 4.133 19 C -0.145 4.145 20 C -0.134 4.134 21 H 0.272 0.728 22 H 0.394 0.606 23 H 0.094 0.906 24 H 0.092 0.908 25 H 0.087 0.913 26 H 0.082 0.918 27 H 0.063 0.937 28 H 0.075 0.925 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.919 -12.620 -1.716 12.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.431 4.431 8 H 0.120 0.880 9 N -0.191 5.191 10 C 0.254 3.746 11 O -0.484 6.484 12 C -0.184 4.184 13 H 0.126 0.874 14 C -0.197 4.197 15 C -0.135 4.135 16 H 0.132 0.868 17 C -0.098 4.098 18 C -0.170 4.170 19 C -0.182 4.182 20 C -0.172 4.172 21 H 0.082 0.918 22 H 0.227 0.773 23 H 0.112 0.888 24 H 0.111 0.889 25 H 0.105 0.895 26 H 0.101 0.899 27 H 0.082 0.918 28 H 0.094 0.906 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.257 -12.419 -1.723 12.541 hybrid contribution -0.331 0.965 0.017 1.021 sum -0.588 -11.454 -1.706 11.595 Atomic orbital electron populations 1.69610 1.05950 1.28280 1.50333 1.25268 0.95632 0.99730 0.97248 0.85913 0.78768 0.80424 0.79079 1.19886 1.20932 1.19884 1.19686 0.93362 0.82333 1.47739 0.88004 1.41818 1.09267 1.04453 1.63573 1.19052 0.87545 0.84036 0.83980 1.90496 1.13945 1.87241 1.56744 1.22178 1.01390 0.91734 1.03052 0.87416 1.22979 1.02329 1.02630 0.91800 1.22273 0.99014 0.93036 0.99142 0.86823 1.22138 0.98279 0.94480 0.94909 1.22970 0.98679 0.98728 0.96653 1.22853 1.00101 0.97526 0.97733 1.22920 1.01458 0.96848 0.95958 0.91793 0.77306 0.88780 0.88917 0.89495 0.89915 0.91828 0.90602 0.91703 0.91782 0.89637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.96 13.05 55.50 0.72 -24.23 16 2 C 0.02 0.63 5.50 -17.47 -0.10 0.53 16 3 Si 0.93 21.34 29.55 -169.99 -5.02 16.32 16 4 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.30 -8.64 9.68 -14.93 -0.14 -8.79 16 8 H 0.10 3.04 7.16 -52.49 -0.38 2.67 16 9 N -0.56 -14.72 5.29 -10.97 -0.06 -14.78 16 10 C 0.47 11.62 7.57 -10.99 -0.08 11.54 16 11 O -0.60 -16.90 15.84 5.54 0.09 -16.81 16 12 C -0.16 -3.07 5.74 -91.74 -0.53 -3.59 16 13 H 0.11 1.86 8.14 -51.93 -0.42 1.43 16 14 C -0.16 -2.58 9.92 -26.73 -0.27 -2.85 16 15 C -0.12 -1.90 5.05 -90.58 -0.46 -2.36 16 16 H 0.11 2.10 7.50 -51.93 -0.39 1.71 16 17 C -0.08 -1.04 3.87 -89.80 -0.35 -1.38 16 18 C -0.13 -1.53 7.65 -25.83 -0.20 -1.72 16 19 C -0.14 -1.55 8.09 -25.83 -0.21 -1.76 16 20 C -0.13 -1.72 7.49 -25.91 -0.19 -1.91 16 21 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 22 H 0.39 9.99 7.90 -40.82 -0.32 9.67 16 23 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16 24 H 0.09 1.24 8.13 -51.93 -0.42 0.82 16 25 H 0.09 1.03 8.07 -51.93 -0.42 0.61 16 26 H 0.08 1.00 7.98 -51.93 -0.41 0.59 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.09 1.24 8.10 -51.93 -0.42 0.82 16 LS Contribution 267.59 15.07 4.03 4.03 Total: -1.00 -30.75 267.59 -7.19 -37.94 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: -4.44 Total: 9.82 kcal Atomic # 6 Polarization: -9.77 SS G_CDS: -2.52 Total: -12.29 kcal Atomic # 7 Polarization: -39.67 SS G_CDS: 0.67 Total: -39.01 kcal Atomic # 8 Polarization: -16.90 SS G_CDS: 0.09 Total: -16.81 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -30.75 -7.19 -37.94 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306219604.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.787 kcal (2) G-P(sol) polarization free energy of solvation -30.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds