Wall clock time and date at job start Sun Mar 29 2020 21:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30154 * 125.47687 * 2 1 4 4 C 1.35740 * 109.00033 * 179.97438 * 3 2 1 5 5 C 1.47228 * 126.23288 * 179.97438 * 4 3 2 6 6 O 1.21661 * 120.00550 * 186.29500 * 5 4 3 7 7 N 1.34783 * 119.99870 * 6.29776 * 5 4 3 8 8 C 1.46494 * 119.99683 * 5.47950 * 7 5 4 9 9 C 1.36954 * 119.99973 * 185.48395 * 7 5 4 10 10 H 1.08001 * 120.00121 * 346.02754 * 9 7 5 11 11 C 1.38978 * 119.99788 * 166.02973 * 9 7 5 12 12 N 1.31420 * 120.00065 * 329.29671 * 11 9 7 13 13 Si 1.86794 * 120.00088 * 149.30479 * 11 9 7 14 14 H 1.48502 * 109.47632 * 94.99117 * 13 11 9 15 15 H 1.48500 * 109.47187 * 214.99044 * 13 11 9 16 16 H 1.48496 * 109.47296 * 334.98941 * 13 11 9 17 17 C 1.36524 * 107.54349 * 359.76030 * 4 3 2 18 18 N 1.35866 * 125.47531 * 179.97438 * 2 1 3 19 19 H 0.97002 * 126.17728 * 359.97438 * 18 2 1 20 20 H 1.09004 * 109.47231 * 270.02306 * 1 2 3 21 21 H 1.08996 * 109.47195 * 30.02676 * 1 2 3 22 22 H 1.09006 * 109.46797 * 150.02714 * 1 2 3 23 23 H 1.09002 * 109.47392 * 35.79660 * 8 7 5 24 24 H 1.09005 * 109.47156 * 155.79593 * 8 7 5 25 25 H 1.09002 * 109.47642 * 275.79700 * 8 7 5 26 26 H 0.96990 * 119.99760 * 179.97438 * 12 11 9 27 27 H 1.08008 * 126.61925 * 180.24397 * 17 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2624 1.0599 0.0000 4 6 3.5640 0.6749 0.0006 5 6 4.7353 1.5669 0.0002 6 8 5.8538 1.1023 -0.1147 7 7 4.5685 2.8983 0.1273 8 6 3.2354 3.4480 0.3859 9 6 5.6452 3.7372 0.0146 10 1 6.6476 3.3370 0.0506 11 6 5.4477 5.1035 -0.1459 12 7 4.3789 5.5440 -0.7710 13 14 6.7015 6.3138 0.5268 14 1 7.6573 6.6848 -0.5475 15 1 6.0035 7.5319 1.0106 16 1 7.4405 5.6869 1.6519 17 6 3.5894 -0.6901 0.0064 18 7 2.2955 -1.1064 0.0005 19 1 1.9901 -2.0272 0.0013 20 1 -0.3634 0.0004 1.0277 21 1 -0.3633 0.8897 -0.5142 22 1 -0.3633 -0.8903 -0.5134 23 1 2.6825 2.7698 1.0358 24 1 3.3308 4.4194 0.8713 25 1 2.7010 3.5640 -0.5570 26 1 4.2410 6.4975 -0.8827 27 1 4.4682 -1.3181 0.0120 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306231282.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:52 Heat of formation + Delta-G solvation = 36.886773 kcal Electronic energy + Delta-G solvation = -13576.707267 eV Core-core repulsion = 11143.357823 eV Total energy + Delta-G solvation = -2433.349444 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.090 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.55468 -37.82570 -34.49495 -32.38255 -31.49813 -31.21854 -26.88458 -26.02861 -24.53916 -21.97633 -20.41551 -18.77858 -17.49083 -16.60067 -15.33390 -15.03645 -14.41615 -14.16832 -13.54112 -13.48470 -13.14277 -12.55009 -12.43499 -12.10972 -11.60517 -11.32314 -11.15622 -10.75169 -10.36059 -10.13165 -9.60875 -9.32974 -8.79030 -8.37921 -7.95126 -7.56638 -6.34282 -3.63025 2.24510 3.03336 3.28393 3.31783 3.35291 3.42158 4.22426 4.53793 4.67349 5.09955 5.24077 5.29966 5.52773 5.57512 5.85039 5.96505 6.15786 6.39141 6.86164 7.06650 7.18711 7.48645 7.62286 7.67031 8.24104 8.38480 8.64921 9.30483 9.58338 10.19435 10.71159 Molecular weight = 209.09amu Principal moments of inertia in cm(-1) A = 0.054987 B = 0.008953 C = 0.007883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.093677 B = 3126.597064 C = 3551.154054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.185 3.815 3 N -0.454 5.454 4 C -0.011 4.011 5 C 0.505 3.495 6 O -0.603 6.603 7 N -0.419 5.419 8 C 0.117 3.883 9 C -0.317 4.317 10 H 0.105 0.895 11 C 0.038 3.962 12 N -0.849 5.849 13 Si 0.911 3.089 14 H -0.278 1.278 15 H -0.282 1.282 16 H -0.267 1.267 17 C -0.007 4.007 18 N -0.572 5.572 19 H 0.414 0.586 20 H 0.076 0.924 21 H 0.090 0.910 22 H 0.068 0.932 23 H 0.052 0.948 24 H 0.059 0.941 25 H 0.050 0.950 26 H 0.268 0.732 27 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.015 -9.140 2.424 13.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.079 4.079 3 N -0.177 5.177 4 C -0.141 4.141 5 C 0.293 3.707 6 O -0.490 6.490 7 N -0.134 5.134 8 C -0.027 4.027 9 C -0.444 4.444 10 H 0.123 0.877 11 C -0.168 4.168 12 N -0.486 5.486 13 Si 0.737 3.263 14 H -0.204 1.204 15 H -0.207 1.207 16 H -0.192 1.192 17 C -0.143 4.143 18 N -0.177 5.177 19 H 0.251 0.749 20 H 0.095 0.905 21 H 0.108 0.892 22 H 0.087 0.913 23 H 0.071 0.929 24 H 0.078 0.922 25 H 0.068 0.932 26 H 0.078 0.922 27 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -8.809 -8.229 2.309 12.274 hybrid contribution 0.545 -0.562 0.156 0.798 sum -8.265 -8.791 2.465 12.315 Atomic orbital electron populations 1.20117 0.85118 1.03737 1.03154 1.23572 0.95596 0.81862 1.06844 1.70931 1.01565 1.27160 1.18022 1.21202 0.91799 0.92047 1.09032 1.16627 0.86068 0.82181 0.85819 1.90588 1.24279 1.75582 1.58549 1.43519 1.08483 1.04104 1.57279 1.21595 0.83114 0.97524 1.00437 1.19667 0.88262 0.87420 1.49099 0.87733 1.25237 0.97724 0.98049 0.95834 1.70236 1.29260 1.15269 1.33851 0.86179 0.80630 0.79515 0.79964 1.20398 1.20728 1.19184 1.22611 0.86586 0.96384 1.08750 1.43152 1.06681 1.09663 1.58187 0.74872 0.90512 0.89155 0.91293 0.92927 0.92188 0.93176 0.92163 0.79955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.63 10.51 36.00 0.38 -0.25 15 2 C 0.19 2.85 8.14 -154.95 -1.26 1.59 15 3 N -0.45 -9.36 8.04 -7.24 -0.06 -9.42 15 4 C -0.01 -0.26 6.58 -83.10 -0.55 -0.81 15 5 C 0.50 13.99 7.60 -12.61 -0.10 13.89 15 6 O -0.60 -18.07 16.51 5.22 0.09 -17.99 15 7 N -0.42 -11.98 3.02 -123.49 -0.37 -12.35 15 8 C 0.12 3.01 7.71 59.84 0.46 3.47 15 9 C -0.32 -9.44 9.32 -14.99 -0.14 -9.58 15 10 H 0.10 3.23 7.39 -52.49 -0.39 2.84 15 11 C 0.04 1.04 4.63 -17.45 -0.08 0.96 15 12 N -0.85 -23.86 11.42 55.50 0.63 -23.23 15 13 Si 0.91 21.15 29.65 -169.99 -5.04 16.11 15 14 H -0.28 -6.39 7.11 56.52 0.40 -5.99 15 15 H -0.28 -6.33 7.11 56.52 0.40 -5.93 15 16 H -0.27 -6.20 7.11 56.52 0.40 -5.80 15 17 C -0.01 -0.12 11.78 -16.35 -0.19 -0.31 15 18 N -0.57 -7.70 6.12 -9.91 -0.06 -7.76 15 19 H 0.41 3.57 8.96 -40.82 -0.37 3.20 15 20 H 0.08 0.66 8.14 -51.93 -0.42 0.24 15 21 H 0.09 0.95 8.14 -51.93 -0.42 0.52 15 22 H 0.07 0.49 8.14 -51.93 -0.42 0.07 15 23 H 0.05 1.25 5.96 -51.93 -0.31 0.94 15 24 H 0.06 1.57 6.48 -51.93 -0.34 1.23 15 25 H 0.05 1.33 8.06 -51.93 -0.42 0.91 15 26 H 0.27 6.99 8.31 -40.82 -0.34 6.65 15 27 H 0.18 2.88 8.06 -52.48 -0.42 2.46 15 LS Contribution 239.98 15.07 3.62 3.62 Total: -1.00 -35.39 239.98 -5.32 -40.71 By element: Atomic # 1 Polarization: 4.00 SS G_CDS: -2.64 Total: 1.35 kcal Atomic # 6 Polarization: 10.44 SS G_CDS: -1.48 Total: 8.96 kcal Atomic # 7 Polarization: -52.90 SS G_CDS: 0.14 Total: -52.76 kcal Atomic # 8 Polarization: -18.07 SS G_CDS: 0.09 Total: -17.99 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.04 Total: 16.11 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -35.39 -5.32 -40.71 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306231282.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.597 kcal (2) G-P(sol) polarization free energy of solvation -35.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.711 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds