Wall clock time and date at job start Sun Mar 29 2020 21:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30668 * 1 3 3 Si 1.86808 * 119.99607 * 2 1 4 4 H 1.48495 * 109.47217 * 93.87166 * 3 2 1 5 5 H 1.48498 * 109.46747 * 213.87376 * 3 2 1 6 6 H 1.48498 * 109.47000 * 333.86927 * 3 2 1 7 7 C 1.40050 * 120.00548 * 180.26411 * 2 1 3 8 8 H 1.08004 * 120.00072 * 9.78691 * 7 2 1 9 9 C 1.46372 * 120.00522 * 189.78759 * 7 2 1 10 10 O 1.21684 * 119.99679 * 9.20562 * 9 7 2 11 11 N 1.34773 * 120.00293 * 189.21406 * 9 7 2 12 12 C 1.46860 * 120.67729 * 354.45081 * 11 9 7 13 13 C 1.52613 * 109.52226 * 236.53361 * 12 11 9 14 14 C 1.53201 * 109.50310 * 302.49576 * 13 12 11 15 15 C 1.53144 * 108.98780 * 57.81697 * 14 13 12 16 16 C 1.52781 * 117.78968 * 90.34753 * 15 14 13 17 17 C 1.52748 * 117.85184 * 159.33971 * 15 14 13 18 18 C 1.47155 * 120.67649 * 174.73267 * 11 9 7 19 19 H 0.96994 * 120.00252 * 359.73430 * 1 2 3 20 20 H 1.09005 * 109.50613 * 356.50797 * 12 11 9 21 21 H 1.09003 * 109.50542 * 116.63220 * 12 11 9 22 22 H 1.09003 * 109.54269 * 182.42440 * 13 12 11 23 23 H 1.08998 * 109.33908 * 62.44607 * 13 12 11 24 24 H 1.09001 * 109.55019 * 297.97007 * 14 13 12 25 25 H 1.08993 * 109.63509 * 177.72132 * 14 13 12 26 26 H 1.09004 * 117.50875 * 215.30220 * 16 15 14 27 27 H 1.09000 * 117.50902 * 0.36075 * 16 15 14 28 28 H 1.08998 * 117.50520 * 359.74259 * 17 15 14 29 29 H 1.08998 * 117.50412 * 144.76305 * 17 15 14 30 30 H 1.08997 * 109.74770 * 249.31029 * 18 11 9 31 31 H 1.08992 * 109.74551 * 10.04382 * 18 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6179 0.0000 4 1 2.5700 1.9993 1.3968 5 1 3.4948 1.4653 -0.7804 6 1 1.3995 2.6749 -0.6166 7 6 2.0070 -1.2128 -0.0056 8 1 1.4789 -2.1406 -0.1689 9 6 3.4548 -1.2230 0.2098 10 8 4.0251 -0.2063 0.5587 11 7 4.1561 -2.3584 0.0217 12 6 3.4704 -3.6213 -0.2809 13 6 3.8572 -4.6727 0.7555 14 6 5.3790 -4.8490 0.7617 15 6 6.0359 -3.4984 1.0611 16 6 6.3115 -3.1487 2.5226 17 6 7.4698 -3.5033 1.5875 18 6 5.6243 -2.3592 0.1214 19 1 -0.4850 0.8400 0.0039 20 1 2.3918 -3.4654 -0.2536 21 1 3.7638 -3.9663 -1.2723 22 1 3.3824 -5.6218 0.5067 23 1 3.5249 -4.3473 1.7412 24 1 5.7088 -5.2067 -0.2137 25 1 5.6610 -5.5699 1.5291 26 1 6.2053 -2.1052 2.8193 27 1 6.0310 -3.8832 3.2776 28 1 7.9514 -4.4710 1.7272 29 1 8.1258 -2.6934 1.2685 30 1 6.0603 -2.5195 -0.8646 31 1 5.9664 -1.4066 0.5256 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306245932.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:12 Heat of formation + Delta-G solvation = -26.889350 kcal Electronic energy + Delta-G solvation = -14166.865971 eV Core-core repulsion = 11834.291331 eV Total energy + Delta-G solvation = -2332.574640 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.27254 -37.10651 -34.52673 -32.82281 -31.43040 -28.23749 -26.23808 -24.44705 -22.34406 -21.63958 -19.71312 -18.16586 -16.62225 -15.97315 -15.24036 -14.89294 -14.42043 -13.78937 -13.59771 -13.06795 -12.63269 -12.37171 -12.31353 -11.92139 -11.62860 -11.30107 -11.19805 -10.74791 -10.61767 -10.41120 -10.22875 -9.86623 -9.52862 -9.22666 -9.00208 -7.81485 -7.47125 -6.60399 -4.81713 3.46875 3.52023 3.77782 3.92056 4.23334 4.35482 4.62701 4.86596 5.04406 5.14539 5.27508 5.44973 5.55043 5.63994 5.79764 5.85786 6.02463 6.09090 6.12454 6.18193 6.26698 6.34205 6.37323 6.50873 6.57389 6.72198 7.12665 7.67272 7.91925 8.34036 8.75097 9.18449 10.08327 10.40176 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.045060 B = 0.010532 C = 0.009132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.249080 B = 2657.835053 C = 3065.572945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.101 3.899 3 Si 0.968 3.032 4 H -0.280 1.280 5 H -0.262 1.262 6 H -0.324 1.324 7 C -0.533 4.533 8 H 0.091 0.909 9 C 0.554 3.446 10 O -0.619 6.619 11 N -0.628 5.628 12 C 0.120 3.880 13 C -0.133 4.133 14 C -0.076 4.076 15 C -0.135 4.135 16 C -0.168 4.168 17 C -0.176 4.176 18 C 0.156 3.844 19 H 0.282 0.718 20 H 0.097 0.903 21 H 0.046 0.954 22 H 0.065 0.935 23 H 0.065 0.935 24 H 0.063 0.937 25 H 0.056 0.944 26 H 0.094 0.906 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.092 0.908 30 H 0.051 0.949 31 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.959 -8.745 0.874 12.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.117 4.117 3 Si 0.801 3.199 4 H -0.207 1.207 5 H -0.187 1.187 6 H -0.255 1.255 7 C -0.568 4.568 8 H 0.108 0.892 9 C 0.364 3.636 10 O -0.511 6.511 11 N -0.362 5.362 12 C -0.004 4.004 13 C -0.172 4.172 14 C -0.114 4.114 15 C -0.136 4.136 16 C -0.205 4.205 17 C -0.214 4.214 18 C 0.032 3.968 19 H 0.092 0.908 20 H 0.116 0.884 21 H 0.064 0.936 22 H 0.084 0.916 23 H 0.084 0.916 24 H 0.081 0.919 25 H 0.075 0.925 26 H 0.113 0.887 27 H 0.107 0.893 28 H 0.108 0.892 29 H 0.110 0.890 30 H 0.069 0.931 31 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 9.032 -8.201 1.036 12.244 hybrid contribution 0.277 0.467 0.099 0.552 sum 9.309 -7.734 1.135 12.156 Atomic orbital electron populations 1.69562 1.07992 1.29996 1.38268 1.25787 0.94720 1.02169 0.89015 0.85198 0.77931 0.77229 0.79562 1.20658 1.18694 1.25532 1.20805 0.89376 0.95829 1.50798 0.89151 1.18302 0.88220 0.80607 0.76511 1.90180 1.72050 1.32691 1.56211 1.47636 1.04297 1.08914 1.75338 1.21339 0.99444 0.83843 0.95813 1.21844 0.95190 0.99020 1.01118 1.21067 0.95521 0.93801 1.00975 1.21890 0.97290 0.97795 0.96595 1.22943 1.02299 1.02371 0.92861 1.22920 0.91065 1.02490 1.04928 1.20805 0.82822 0.96707 0.96425 0.90836 0.88444 0.93594 0.91614 0.91637 0.91865 0.92490 0.88730 0.89347 0.89212 0.88990 0.93134 0.89693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -23.72 13.92 55.55 0.77 -22.95 16 2 C 0.10 2.91 5.52 -17.37 -0.10 2.82 16 3 Si 0.97 25.93 25.93 -169.99 -4.41 21.52 16 4 H -0.28 -7.70 7.11 56.52 0.40 -7.30 16 5 H -0.26 -7.36 6.50 56.52 0.37 -6.99 16 6 H -0.32 -8.20 7.11 56.52 0.40 -7.80 16 7 C -0.53 -15.15 9.41 -35.63 -0.34 -15.48 16 8 H 0.09 2.53 5.88 -52.48 -0.31 2.22 16 9 C 0.55 15.03 7.38 -12.99 -0.10 14.94 16 10 O -0.62 -18.22 11.60 5.20 0.06 -18.16 16 11 N -0.63 -13.94 2.98 -174.58 -0.52 -14.46 16 12 C 0.12 2.21 6.20 -4.04 -0.03 2.19 16 13 C -0.13 -2.04 6.07 -26.83 -0.16 -2.20 16 14 C -0.08 -1.05 5.64 -26.55 -0.15 -1.20 16 15 C -0.13 -2.11 2.10 -154.52 -0.32 -2.43 16 16 C -0.17 -2.53 9.92 -26.83 -0.27 -2.80 16 17 C -0.18 -2.30 10.00 -26.84 -0.27 -2.57 16 18 C 0.16 2.99 6.20 -3.53 -0.02 2.96 16 19 H 0.28 7.42 8.29 -40.82 -0.34 7.09 16 20 H 0.10 1.97 5.33 -51.93 -0.28 1.69 16 21 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 22 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 23 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 24 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.06 0.70 8.10 -51.93 -0.42 0.28 16 26 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 27 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 28 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 29 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 30 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.08 1.79 6.96 -51.93 -0.36 1.43 16 LS Contribution 251.42 15.07 3.79 3.79 Total: -1.00 -31.46 251.42 -6.39 -37.85 By element: Atomic # 1 Polarization: 0.54 SS G_CDS: -4.34 Total: -3.81 kcal Atomic # 6 Polarization: -2.03 SS G_CDS: -1.75 Total: -3.78 kcal Atomic # 7 Polarization: -37.66 SS G_CDS: 0.25 Total: -37.41 kcal Atomic # 8 Polarization: -18.22 SS G_CDS: 0.06 Total: -18.16 kcal Atomic # 14 Polarization: 25.93 SS G_CDS: -4.41 Total: 21.52 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -31.46 -6.39 -37.85 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306245932.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.959 kcal (2) G-P(sol) polarization free energy of solvation -31.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds