Wall clock time and date at job start Sun Mar 29 2020 21:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30668 * 1 3 3 Si 1.86808 * 119.99607 * 2 1 4 4 H 1.48495 * 109.47217 * 93.87166 * 3 2 1 5 5 H 1.48498 * 109.46747 * 213.87376 * 3 2 1 6 6 H 1.48498 * 109.47000 * 333.86927 * 3 2 1 7 7 C 1.40050 * 120.00548 * 180.26411 * 2 1 3 8 8 H 1.08004 * 120.00072 * 9.78691 * 7 2 1 9 9 C 1.46372 * 120.00522 * 189.78759 * 7 2 1 10 10 O 1.21684 * 119.99679 * 9.20562 * 9 7 2 11 11 N 1.34773 * 120.00293 * 189.21406 * 9 7 2 12 12 C 1.46860 * 120.67729 * 354.45081 * 11 9 7 13 13 C 1.52613 * 109.52226 * 236.53361 * 12 11 9 14 14 C 1.53201 * 109.50310 * 302.49576 * 13 12 11 15 15 C 1.53144 * 108.98780 * 57.81697 * 14 13 12 16 16 C 1.52781 * 117.78968 * 90.34753 * 15 14 13 17 17 C 1.52748 * 117.85184 * 159.33971 * 15 14 13 18 18 C 1.47155 * 120.67649 * 174.73267 * 11 9 7 19 19 H 0.96994 * 120.00252 * 359.73430 * 1 2 3 20 20 H 1.09005 * 109.50613 * 356.50797 * 12 11 9 21 21 H 1.09003 * 109.50542 * 116.63220 * 12 11 9 22 22 H 1.09003 * 109.54269 * 182.42440 * 13 12 11 23 23 H 1.08998 * 109.33908 * 62.44607 * 13 12 11 24 24 H 1.09001 * 109.55019 * 297.97007 * 14 13 12 25 25 H 1.08993 * 109.63509 * 177.72132 * 14 13 12 26 26 H 1.09004 * 117.50875 * 215.30220 * 16 15 14 27 27 H 1.09000 * 117.50902 * 0.36075 * 16 15 14 28 28 H 1.08998 * 117.50520 * 359.74259 * 17 15 14 29 29 H 1.08998 * 117.50412 * 144.76305 * 17 15 14 30 30 H 1.08997 * 109.74770 * 249.31029 * 18 11 9 31 31 H 1.08992 * 109.74551 * 10.04382 * 18 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6179 0.0000 4 1 2.5700 1.9993 1.3968 5 1 3.4948 1.4653 -0.7804 6 1 1.3995 2.6749 -0.6166 7 6 2.0070 -1.2128 -0.0056 8 1 1.4789 -2.1406 -0.1689 9 6 3.4548 -1.2230 0.2098 10 8 4.0251 -0.2063 0.5587 11 7 4.1561 -2.3584 0.0217 12 6 3.4704 -3.6213 -0.2809 13 6 3.8572 -4.6727 0.7555 14 6 5.3790 -4.8490 0.7617 15 6 6.0359 -3.4984 1.0611 16 6 6.3115 -3.1487 2.5226 17 6 7.4698 -3.5033 1.5875 18 6 5.6243 -2.3592 0.1214 19 1 -0.4850 0.8400 0.0039 20 1 2.3918 -3.4654 -0.2536 21 1 3.7638 -3.9663 -1.2723 22 1 3.3824 -5.6218 0.5067 23 1 3.5249 -4.3473 1.7412 24 1 5.7088 -5.2067 -0.2137 25 1 5.6610 -5.5699 1.5291 26 1 6.2053 -2.1052 2.8193 27 1 6.0310 -3.8832 3.2776 28 1 7.9514 -4.4710 1.7272 29 1 8.1258 -2.6934 1.2685 30 1 6.0603 -2.5195 -0.8646 31 1 5.9664 -1.4066 0.5256 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306245932.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:12 Heat of formation + Delta-G solvation = -47.223514 kcal Electronic energy + Delta-G solvation = -14167.747727 eV Core-core repulsion = 11834.291331 eV Total energy + Delta-G solvation = -2333.456396 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.81235 -38.86436 -36.09300 -35.02223 -32.90308 -29.95388 -27.98046 -26.08727 -23.53597 -22.92970 -21.57148 -19.54375 -18.60593 -17.99973 -16.90471 -16.45422 -15.82308 -15.61152 -15.03833 -14.64182 -14.48239 -13.97351 -13.88328 -13.71935 -13.23370 -13.19427 -12.60466 -12.43905 -12.19178 -11.88484 -11.66752 -11.46525 -11.24331 -10.98432 -10.58616 -9.92547 -9.26091 -8.81420 -7.02319 1.29558 1.35002 1.59787 2.07731 2.32675 2.59744 2.99534 3.29962 3.69231 3.85796 4.00990 4.07488 4.21847 4.36701 4.60243 4.63807 4.76338 4.79312 4.85073 4.99337 5.01468 5.03731 5.07335 5.22662 5.27017 5.37481 5.46459 5.68266 6.01336 6.22607 6.61471 7.15244 7.98064 8.23884 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.045060 B = 0.010532 C = 0.009132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.249080 B = 2657.835053 C = 3065.572945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.070 3.930 3 Si 1.012 2.988 4 H -0.294 1.294 5 H -0.286 1.286 6 H -0.298 1.298 7 C -0.551 4.551 8 H 0.087 0.913 9 C 0.547 3.453 10 O -0.649 6.649 11 N -0.629 5.629 12 C 0.112 3.888 13 C -0.126 4.126 14 C -0.069 4.069 15 C -0.150 4.150 16 C -0.184 4.184 17 C -0.144 4.144 18 C 0.152 3.848 19 H 0.292 0.708 20 H 0.074 0.926 21 H 0.069 0.931 22 H 0.098 0.902 23 H 0.043 0.957 24 H 0.081 0.919 25 H 0.083 0.917 26 H 0.065 0.935 27 H 0.104 0.896 28 H 0.122 0.878 29 H 0.094 0.906 30 H 0.068 0.932 31 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.318 -10.723 0.698 14.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C -0.146 4.146 3 Si 0.845 3.155 4 H -0.222 1.222 5 H -0.213 1.213 6 H -0.228 1.228 7 C -0.587 4.587 8 H 0.105 0.895 9 C 0.355 3.645 10 O -0.545 6.545 11 N -0.361 5.361 12 C -0.010 4.010 13 C -0.165 4.165 14 C -0.106 4.106 15 C -0.151 4.151 16 C -0.221 4.221 17 C -0.181 4.181 18 C 0.029 3.971 19 H 0.102 0.898 20 H 0.092 0.908 21 H 0.088 0.912 22 H 0.117 0.883 23 H 0.062 0.938 24 H 0.100 0.900 25 H 0.101 0.899 26 H 0.084 0.916 27 H 0.122 0.878 28 H 0.140 0.860 29 H 0.112 0.888 30 H 0.086 0.914 31 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 10.382 -10.215 0.846 14.589 hybrid contribution -0.107 1.034 0.143 1.049 sum 10.275 -9.182 0.988 13.815 Atomic orbital electron populations 1.69555 1.08241 1.31104 1.38897 1.26253 0.95297 1.03811 0.89269 0.84583 0.76455 0.76224 0.78245 1.22170 1.21291 1.22821 1.21040 0.90487 0.95874 1.51344 0.89525 1.18283 0.88201 0.81666 0.76348 1.90148 1.72586 1.34287 1.57437 1.47638 1.05831 1.08796 1.73817 1.21557 0.97922 0.83189 0.98356 1.21791 0.97046 0.99008 0.98607 1.21081 0.93628 0.92958 1.02938 1.21863 0.99992 0.97462 0.95803 1.22953 1.04581 1.01273 0.93257 1.23017 0.89593 1.04019 1.01468 1.20955 0.80732 0.97133 0.98284 0.89761 0.90806 0.91244 0.88319 0.93775 0.89999 0.89853 0.91601 0.87804 0.86020 0.88756 0.91416 0.92656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -48.69 13.92 21.84 0.30 -48.39 16 2 C 0.07 4.06 5.52 85.31 0.47 4.53 16 3 Si 1.01 54.22 25.93 68.60 1.78 56.00 16 4 H -0.29 -16.29 7.11 99.48 0.71 -15.58 16 5 H -0.29 -16.35 6.50 99.48 0.65 -15.70 16 6 H -0.30 -14.51 7.11 99.48 0.71 -13.80 16 7 C -0.55 -32.03 9.41 24.83 0.23 -31.79 16 8 H 0.09 4.98 5.88 -2.91 -0.02 4.96 16 9 C 0.55 30.33 7.38 86.36 0.64 30.97 16 10 O -0.65 -39.30 11.60 -4.30 -0.05 -39.35 16 11 N -0.63 -27.85 2.98 -824.48 -2.46 -30.31 16 12 C 0.11 4.02 6.20 86.18 0.53 4.56 16 13 C -0.13 -3.51 6.07 30.53 0.19 -3.33 16 14 C -0.07 -1.61 5.64 30.71 0.17 -1.44 16 15 C -0.15 -4.32 2.10 -52.19 -0.11 -4.43 16 16 C -0.18 -5.24 9.92 30.53 0.30 -4.94 16 17 C -0.14 -3.24 10.00 30.52 0.31 -2.94 16 18 C 0.15 5.69 6.20 86.36 0.54 6.22 16 19 H 0.29 15.31 8.29 -92.71 -0.77 14.54 16 20 H 0.07 2.99 5.33 -2.38 -0.01 2.98 16 21 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 22 H 0.10 2.12 8.14 -2.39 -0.02 2.11 16 23 H 0.04 1.41 8.14 -2.39 -0.02 1.40 16 24 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 25 H 0.08 1.59 8.10 -2.39 -0.02 1.57 16 26 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 27 H 0.10 2.61 8.14 -2.39 -0.02 2.59 16 28 H 0.12 2.05 8.14 -2.39 -0.02 2.03 16 29 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 30 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 31 H 0.05 2.38 6.96 -2.39 -0.02 2.36 16 Total: -1.00 -68.73 251.42 3.89 -64.83 By element: Atomic # 1 Polarization: -1.25 SS G_CDS: 1.05 Total: -0.20 kcal Atomic # 6 Polarization: -5.85 SS G_CDS: 3.27 Total: -2.58 kcal Atomic # 7 Polarization: -76.54 SS G_CDS: -2.16 Total: -78.70 kcal Atomic # 8 Polarization: -39.30 SS G_CDS: -0.05 Total: -39.35 kcal Atomic # 14 Polarization: 54.22 SS G_CDS: 1.78 Total: 56.00 kcal Total: -68.73 3.89 -64.83 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306245932.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.609 kcal (2) G-P(sol) polarization free energy of solvation -68.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds